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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2007-04-12 20:59:06 UTC
Update Date2023-02-21 17:17:13 UTC
HMDB IDHMDB0006039
Secondary Accession Numbers
  • HMDB06039
Metabolite Identification
Common Name8-Chloroxanthine
Description8-Chloroxanthine is a derivative of xanthine, found occasionally in human urine. 8-Chloroxanthine originates from the metabolism of methylxanthines (caffeine, theophylline and theobromine. Purine derivatives in urinary calculi could be considered markers of abnormal purine metabolism. The content of a purine derivative in stone depends on its average urinary excretion in the general population, similarity to the chemical structure of uric acid, and content of the latter in stone. This suggests that purines in stones represent a solid solution with uric acid as solvent. It is also plausible that methylxanthines, ubiquitous components of the diet and drugs, are involved in the pathogenesis of urolithiasis. Caffeine is metabolized via successive pathways mainly catalyzed by CYP1A2, xanthine oxidase or N-acetyltransferase-2 to give 14 different metabolites. CYP1A2 activity shows an inter-individual variability among the population. CYP1A2, an isoform of the CYP1A cytochrome P450 super-family, is involved in the metabolism of many drugs and plays a potentially important role in the induction of chemical carcinogenesis. (PMID: 11712316 , 15833286 , 3506820 , 15013152 ).
Structure
Data?1676999833
Synonyms
ValueSource
6-Hydroxy-7,9-dihydro-8H-purin-8-oneHMDB
8-chloro-3, 7-dihydro-1H-Purine-2,6-dioneHMDB
8-chloro-9H-Purine-2,6-diolHMDB
8-chloro-XanthineHMDB
Chemical FormulaC5H3ClN4O2
Average Molecular Weight186.556
Monoisotopic Molecular Weight185.994453067
IUPAC Name8-chloro-2,3,6,7-tetrahydro-1H-purine-2,6-dione
Traditional Name8-chloroxanthine
CAS Registry Number13548-68-0
SMILES
ClC1=NC2=C(N1)C(=O)NC(=O)N2
InChI Identifier
InChI=1S/C5H3ClN4O2/c6-4-7-1-2(8-4)9-5(12)10-3(1)11/h(H3,7,8,9,10,11,12)
InChI KeyOZPCWWUKRLUQSS-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as xanthines. These are purine derivatives with a ketone group conjugated at carbons 2 and 6 of the purine moiety.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassImidazopyrimidines
Sub ClassPurines and purine derivatives
Direct ParentXanthines
Alternative Parents
Substituents
  • Xanthine
  • 6-oxopurine
  • Purinone
  • Alkaloid or derivatives
  • Pyrimidone
  • Aryl chloride
  • Aryl halide
  • Pyrimidine
  • Azole
  • Imidazole
  • Heteroaromatic compound
  • Vinylogous amide
  • Lactam
  • Urea
  • Azacycle
  • Organooxygen compound
  • Organonitrogen compound
  • Organochloride
  • Organohalogen compound
  • Organic nitrogen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Organopnictogen compound
  • Organic oxygen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water Solubility0.17 mg/mL at 20 °CNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility1.64 g/LALOGPS
logP0.35ALOGPS
logP0.71ChemAxon
logS-2.1ALOGPS
pKa (Strongest Acidic)5.28ChemAxon
pKa (Strongest Basic)-3.2ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area86.88 ŲChemAxon
Rotatable Bond Count0ChemAxon
Refractivity41.95 m³·mol⁻¹ChemAxon
Polarizability15.17 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+137.76430932474
DeepCCS[M-H]-135.35430932474
DeepCCS[M-2H]-170.87430932474
DeepCCS[M+Na]+146.36330932474
AllCCS[M+H]+137.532859911
AllCCS[M+H-H2O]+133.132859911
AllCCS[M+NH4]+141.632859911
AllCCS[M+Na]+142.732859911
AllCCS[M-H]-131.232859911
AllCCS[M+Na-2H]-131.832859911
AllCCS[M+HCOO]-132.632859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
8-ChloroxanthineClC1=NC2=C(N1)C(=O)NC(=O)N22741.2Standard polar33892256
8-ChloroxanthineClC1=NC2=C(N1)C(=O)NC(=O)N21888.4Standard non polar33892256
8-ChloroxanthineClC1=NC2=C(N1)C(=O)NC(=O)N22374.7Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
8-Chloroxanthine,1TMS,isomer #1C[Si](C)(C)N1C(Cl)=NC2=C1C(=O)[NH]C(=O)[NH]22047.0Semi standard non polar33892256
8-Chloroxanthine,1TMS,isomer #1C[Si](C)(C)N1C(Cl)=NC2=C1C(=O)[NH]C(=O)[NH]22017.2Standard non polar33892256
8-Chloroxanthine,1TMS,isomer #1C[Si](C)(C)N1C(Cl)=NC2=C1C(=O)[NH]C(=O)[NH]22786.0Standard polar33892256
8-Chloroxanthine,1TMS,isomer #2C[Si](C)(C)N1C(=O)[NH]C2=C([NH]C(Cl)=N2)C1=O1989.8Semi standard non polar33892256
8-Chloroxanthine,1TMS,isomer #2C[Si](C)(C)N1C(=O)[NH]C2=C([NH]C(Cl)=N2)C1=O2112.5Standard non polar33892256
8-Chloroxanthine,1TMS,isomer #2C[Si](C)(C)N1C(=O)[NH]C2=C([NH]C(Cl)=N2)C1=O2815.3Standard polar33892256
8-Chloroxanthine,1TMS,isomer #3C[Si](C)(C)N1C(=O)[NH]C(=O)C2=C1N=C(Cl)[NH]21994.7Semi standard non polar33892256
8-Chloroxanthine,1TMS,isomer #3C[Si](C)(C)N1C(=O)[NH]C(=O)C2=C1N=C(Cl)[NH]22063.7Standard non polar33892256
8-Chloroxanthine,1TMS,isomer #3C[Si](C)(C)N1C(=O)[NH]C(=O)C2=C1N=C(Cl)[NH]22837.7Standard polar33892256
8-Chloroxanthine,2TMS,isomer #1C[Si](C)(C)N1C(Cl)=NC2=C1C(=O)[NH]C(=O)N2[Si](C)(C)C2047.9Semi standard non polar33892256
8-Chloroxanthine,2TMS,isomer #1C[Si](C)(C)N1C(Cl)=NC2=C1C(=O)[NH]C(=O)N2[Si](C)(C)C2113.6Standard non polar33892256
8-Chloroxanthine,2TMS,isomer #1C[Si](C)(C)N1C(Cl)=NC2=C1C(=O)[NH]C(=O)N2[Si](C)(C)C2380.1Standard polar33892256
8-Chloroxanthine,2TMS,isomer #2C[Si](C)(C)N1C(=O)[NH]C2=C(C1=O)N([Si](C)(C)C)C(Cl)=N22096.8Semi standard non polar33892256
8-Chloroxanthine,2TMS,isomer #2C[Si](C)(C)N1C(=O)[NH]C2=C(C1=O)N([Si](C)(C)C)C(Cl)=N22144.8Standard non polar33892256
8-Chloroxanthine,2TMS,isomer #2C[Si](C)(C)N1C(=O)[NH]C2=C(C1=O)N([Si](C)(C)C)C(Cl)=N22366.7Standard polar33892256
8-Chloroxanthine,2TMS,isomer #3C[Si](C)(C)N1C(=O)C2=C(N=C(Cl)[NH]2)N([Si](C)(C)C)C1=O2038.6Semi standard non polar33892256
8-Chloroxanthine,2TMS,isomer #3C[Si](C)(C)N1C(=O)C2=C(N=C(Cl)[NH]2)N([Si](C)(C)C)C1=O2173.1Standard non polar33892256
8-Chloroxanthine,2TMS,isomer #3C[Si](C)(C)N1C(=O)C2=C(N=C(Cl)[NH]2)N([Si](C)(C)C)C1=O2372.3Standard polar33892256
8-Chloroxanthine,3TMS,isomer #1C[Si](C)(C)N1C(=O)C2=C(N=C(Cl)N2[Si](C)(C)C)N([Si](C)(C)C)C1=O2127.8Semi standard non polar33892256
8-Chloroxanthine,3TMS,isomer #1C[Si](C)(C)N1C(=O)C2=C(N=C(Cl)N2[Si](C)(C)C)N([Si](C)(C)C)C1=O2139.6Standard non polar33892256
8-Chloroxanthine,3TMS,isomer #1C[Si](C)(C)N1C(=O)C2=C(N=C(Cl)N2[Si](C)(C)C)N([Si](C)(C)C)C1=O2190.8Standard polar33892256
8-Chloroxanthine,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)N1C(Cl)=NC2=C1C(=O)[NH]C(=O)[NH]22238.5Semi standard non polar33892256
8-Chloroxanthine,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)N1C(Cl)=NC2=C1C(=O)[NH]C(=O)[NH]22269.5Standard non polar33892256
8-Chloroxanthine,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)N1C(Cl)=NC2=C1C(=O)[NH]C(=O)[NH]22794.0Standard polar33892256
8-Chloroxanthine,1TBDMS,isomer #2CC(C)(C)[Si](C)(C)N1C(=O)[NH]C2=C([NH]C(Cl)=N2)C1=O2175.9Semi standard non polar33892256
8-Chloroxanthine,1TBDMS,isomer #2CC(C)(C)[Si](C)(C)N1C(=O)[NH]C2=C([NH]C(Cl)=N2)C1=O2329.3Standard non polar33892256
8-Chloroxanthine,1TBDMS,isomer #2CC(C)(C)[Si](C)(C)N1C(=O)[NH]C2=C([NH]C(Cl)=N2)C1=O2809.9Standard polar33892256
8-Chloroxanthine,1TBDMS,isomer #3CC(C)(C)[Si](C)(C)N1C(=O)[NH]C(=O)C2=C1N=C(Cl)[NH]22180.6Semi standard non polar33892256
8-Chloroxanthine,1TBDMS,isomer #3CC(C)(C)[Si](C)(C)N1C(=O)[NH]C(=O)C2=C1N=C(Cl)[NH]22292.2Standard non polar33892256
8-Chloroxanthine,1TBDMS,isomer #3CC(C)(C)[Si](C)(C)N1C(=O)[NH]C(=O)C2=C1N=C(Cl)[NH]22819.9Standard polar33892256
8-Chloroxanthine,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)N1C(Cl)=NC2=C1C(=O)[NH]C(=O)N2[Si](C)(C)C(C)(C)C2450.7Semi standard non polar33892256
8-Chloroxanthine,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)N1C(Cl)=NC2=C1C(=O)[NH]C(=O)N2[Si](C)(C)C(C)(C)C2538.5Standard non polar33892256
8-Chloroxanthine,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)N1C(Cl)=NC2=C1C(=O)[NH]C(=O)N2[Si](C)(C)C(C)(C)C2490.9Standard polar33892256
8-Chloroxanthine,2TBDMS,isomer #2CC(C)(C)[Si](C)(C)N1C(=O)[NH]C2=C(C1=O)N([Si](C)(C)C(C)(C)C)C(Cl)=N22486.3Semi standard non polar33892256
8-Chloroxanthine,2TBDMS,isomer #2CC(C)(C)[Si](C)(C)N1C(=O)[NH]C2=C(C1=O)N([Si](C)(C)C(C)(C)C)C(Cl)=N22573.6Standard non polar33892256
8-Chloroxanthine,2TBDMS,isomer #2CC(C)(C)[Si](C)(C)N1C(=O)[NH]C2=C(C1=O)N([Si](C)(C)C(C)(C)C)C(Cl)=N22489.6Standard polar33892256
8-Chloroxanthine,2TBDMS,isomer #3CC(C)(C)[Si](C)(C)N1C(=O)C2=C(N=C(Cl)[NH]2)N([Si](C)(C)C(C)(C)C)C1=O2388.4Semi standard non polar33892256
8-Chloroxanthine,2TBDMS,isomer #3CC(C)(C)[Si](C)(C)N1C(=O)C2=C(N=C(Cl)[NH]2)N([Si](C)(C)C(C)(C)C)C1=O2558.6Standard non polar33892256
8-Chloroxanthine,2TBDMS,isomer #3CC(C)(C)[Si](C)(C)N1C(=O)C2=C(N=C(Cl)[NH]2)N([Si](C)(C)C(C)(C)C)C1=O2493.0Standard polar33892256
8-Chloroxanthine,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)N1C(=O)C2=C(N=C(Cl)N2[Si](C)(C)C(C)(C)C)N([Si](C)(C)C(C)(C)C)C1=O2727.9Semi standard non polar33892256
8-Chloroxanthine,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)N1C(=O)C2=C(N=C(Cl)N2[Si](C)(C)C(C)(C)C)N([Si](C)(C)C(C)(C)C)C1=O2787.1Standard non polar33892256
8-Chloroxanthine,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)N1C(=O)C2=C(N=C(Cl)N2[Si](C)(C)C(C)(C)C)N([Si](C)(C)C(C)(C)C)C1=O2514.9Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 8-Chloroxanthine GC-MS (Non-derivatized) - 70eV, Positivesplash10-03y0-1900000000-17cacb12b2a02542993c2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 8-Chloroxanthine GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 8-Chloroxanthine 10V, Positive-QTOFsplash10-000i-0900000000-328b540ae0ce13d3cf972017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 8-Chloroxanthine 20V, Positive-QTOFsplash10-000l-0900000000-cbd2837bf99daaa070372017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 8-Chloroxanthine 40V, Positive-QTOFsplash10-05mo-8900000000-21cdab55b94df6db945e2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 8-Chloroxanthine 10V, Negative-QTOFsplash10-001i-0900000000-845a916f9903686862522017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 8-Chloroxanthine 20V, Negative-QTOFsplash10-0006-9400000000-70808ccea687d51625e72017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 8-Chloroxanthine 40V, Negative-QTOFsplash10-0006-9100000000-fe68b8167bc2a234b67c2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 8-Chloroxanthine 10V, Positive-QTOFsplash10-000i-0900000000-66d01670831f1da9ad0f2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 8-Chloroxanthine 20V, Positive-QTOFsplash10-000i-0900000000-356ab4444bf97b1111682021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 8-Chloroxanthine 40V, Positive-QTOFsplash10-00ko-7900000000-124b2f0d4c558b5147bc2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 8-Chloroxanthine 10V, Negative-QTOFsplash10-001i-0900000000-70ed9aed39a2fdeafe722021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 8-Chloroxanthine 20V, Negative-QTOFsplash10-001i-4900000000-cf6e656896a3558da8a92021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 8-Chloroxanthine 40V, Negative-QTOFsplash10-0006-9100000000-15a9044318b70008180d2021-09-24Wishart LabView Spectrum

IR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M-H]-)2023-02-03FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+)2023-02-03FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+)2023-02-03FELIX labView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB023815
KNApSAcK IDNot Available
Chemspider ID24315
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound26103
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceRobins, Roland K. Potential purine antagonists. XV. Preparation of some 6,8-disubstituted purines. Journal of the American Chemical Society (1958), 80 6671-9.
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Morris GS, Simmonds HA, Davies PM: Use of biological fluids for the rapid diagnosis of potentially lethal inherited disorders of human purine and pyrimidine metabolism. Biomed Chromatogr. 1986 Jun;1(3):109-18. [PubMed:3506820 ]
  2. Safranow K, Machoy Z: Simultaneous determination of 16 purine derivatives in urinary calculi by gradient reversed-phase high-performance liquid chromatography with UV detection. J Chromatogr B Analyt Technol Biomed Life Sci. 2005 May 25;819(2):229-35. [PubMed:15833286 ]
  3. Safranow K: [Identification and quantitation of purine derivatives in urinary calculi as markers of abnormal purine metabolism by using high-performance liquid chromatography (HPLC)]. Ann Acad Med Stetin. 2000;46:35-49. [PubMed:11712316 ]
  4. Caubet MS, Comte B, Brazier JL: Determination of urinary 13C-caffeine metabolites by liquid chromatography-mass spectrometry: the use of metabolic ratios to assess CYP1A2 activity. J Pharm Biomed Anal. 2004 Feb 4;34(2):379-89. [PubMed:15013152 ]