Hmdb loader
Record Information
Version5.0
StatusDetected and Quantified
Creation Date2009-02-23 13:32:29 UTC
Update Date2023-02-21 17:17:33 UTC
HMDB IDHMDB0011714
Secondary Accession Numbers
  • HMDB11714
Metabolite Identification
Common NameVanilpyruvic acid
DescriptionVanilpyruvic acid, also known as vanilpyruvate or HMPPA, belongs to the class of organic compounds known as phenylpyruvic acid derivatives. Phenylpyruvic acid derivatives are compounds containing a phenylpyruvic acid moiety, which consists of a phenyl group substituted at the second position by an pyruvic acid. Vanilpyruvic acid has been detected, but not quantified in, a few different foods, such as anatidaes (Anatidae), chickens (Gallus gallus), and domestic pigs (Sus scrofa domestica). This could make vanilpyruvic acid a potential biomarker for the consumption of these foods. Vanilpyruvic acid, with regard to humans, has been linked to the inborn metabolic disorder aromatic l-amino acid decarboxylase deficiency. Based on a literature review very few articles have been published on Vanilpyruvic acid.
Structure
Data?1676999853
Synonyms
ValueSource
VanilpyruvateGenerator
3-Methoxy-4-hydroxyphenylpyruvic acidMeSH
4-Hydroxy-3-methoxyphenylpyruvic acidMeSH
HMPPAMeSH
Vanilpyruvic acid, (14)C-labeledMeSH
3-(4-Hydroxy-3-methoxyphenyl)-2-oxopropanoateGenerator, HMDB
Vanilpyruvic acidMeSH
Chemical FormulaC10H10O5
Average Molecular Weight210.1834
Monoisotopic Molecular Weight210.05282343
IUPAC Name3-(4-hydroxy-3-methoxyphenyl)-2-oxopropanoic acid
Traditional Name3-(4-hydroxy-3-methoxyphenyl)-2-oxopropanoic acid
CAS Registry Number1081-71-6
SMILES
COC1=C(O)C=CC(CC(=O)C(O)=O)=C1
InChI Identifier
InChI=1S/C10H10O5/c1-15-9-5-6(2-3-7(9)11)4-8(12)10(13)14/h2-3,5,11H,4H2,1H3,(H,13,14)
InChI KeyYGQHQTMRZPHIBB-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as phenylpyruvic acid derivatives. Phenylpyruvic acid derivatives are compounds containing a phenylpyruvic acid moiety, which consists of a phenyl group substituted at the second position by an pyruvic acid.
KingdomOrganic compounds
Super ClassBenzenoids
ClassBenzene and substituted derivatives
Sub ClassPhenylpyruvic acid derivatives
Direct ParentPhenylpyruvic acid derivatives
Alternative Parents
Substituents
  • Phenylpyruvate
  • 3-phenylpropanoic-acid
  • Methoxyphenol
  • Phenoxy compound
  • Methoxybenzene
  • Phenol ether
  • Anisole
  • 1-hydroxy-2-unsubstituted benzenoid
  • Alkyl aryl ether
  • Phenol
  • Alpha-keto acid
  • Keto acid
  • Alpha-hydroxy ketone
  • Ketone
  • Carboxylic acid derivative
  • Carboxylic acid
  • Ether
  • Monocarboxylic acid or derivatives
  • Carbonyl group
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Aromatic homomonocyclic compound
Molecular FrameworkAromatic homomonocyclic compounds
External Descriptors
Ontology
Physiological effect
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility1.3 g/LALOGPS
logP1.36ALOGPS
logP1.44ChemAxon
logS-2.2ALOGPS
pKa (Strongest Acidic)2.73ChemAxon
pKa (Strongest Basic)-4.9ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area83.83 ŲChemAxon
Rotatable Bond Count4ChemAxon
Refractivity51.16 m³·mol⁻¹ChemAxon
Polarizability19.53 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+149.95931661259
DarkChem[M-H]-148.72131661259
DeepCCS[M+H]+148.89630932474
DeepCCS[M-H]-146.53830932474
DeepCCS[M-2H]-179.66430932474
DeepCCS[M+Na]+154.98930932474
AllCCS[M+H]+145.532859911
AllCCS[M+H-H2O]+141.432859911
AllCCS[M+NH4]+149.232859911
AllCCS[M+Na]+150.332859911
AllCCS[M-H]-143.732859911
AllCCS[M+Na-2H]-144.232859911
AllCCS[M+HCOO]-144.732859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Vanilpyruvic acidCOC1=C(O)C=CC(CC(=O)C(O)=O)=C13232.7Standard polar33892256
Vanilpyruvic acidCOC1=C(O)C=CC(CC(=O)C(O)=O)=C11727.1Standard non polar33892256
Vanilpyruvic acidCOC1=C(O)C=CC(CC(=O)C(O)=O)=C11830.4Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Vanilpyruvic acid,1TMS,isomer #1COC1=CC(CC(=O)C(=O)O)=CC=C1O[Si](C)(C)C2024.9Semi standard non polar33892256
Vanilpyruvic acid,1TMS,isomer #2COC1=CC(CC(=O)C(=O)O[Si](C)(C)C)=CC=C1O1962.3Semi standard non polar33892256
Vanilpyruvic acid,1TMS,isomer #3COC1=CC(C=C(O[Si](C)(C)C)C(=O)O)=CC=C1O2156.3Semi standard non polar33892256
Vanilpyruvic acid,2TMS,isomer #1COC1=CC(CC(=O)C(=O)O[Si](C)(C)C)=CC=C1O[Si](C)(C)C2040.0Semi standard non polar33892256
Vanilpyruvic acid,2TMS,isomer #2COC1=CC(C=C(O[Si](C)(C)C)C(=O)O)=CC=C1O[Si](C)(C)C2199.6Semi standard non polar33892256
Vanilpyruvic acid,2TMS,isomer #3COC1=CC(C=C(O[Si](C)(C)C)C(=O)O[Si](C)(C)C)=CC=C1O2112.0Semi standard non polar33892256
Vanilpyruvic acid,3TMS,isomer #1COC1=CC(C=C(O[Si](C)(C)C)C(=O)O[Si](C)(C)C)=CC=C1O[Si](C)(C)C2150.5Semi standard non polar33892256
Vanilpyruvic acid,3TMS,isomer #1COC1=CC(C=C(O[Si](C)(C)C)C(=O)O[Si](C)(C)C)=CC=C1O[Si](C)(C)C2146.6Standard non polar33892256
Vanilpyruvic acid,3TMS,isomer #1COC1=CC(C=C(O[Si](C)(C)C)C(=O)O[Si](C)(C)C)=CC=C1O[Si](C)(C)C2232.6Standard polar33892256
Vanilpyruvic acid,1TBDMS,isomer #1COC1=CC(CC(=O)C(=O)O)=CC=C1O[Si](C)(C)C(C)(C)C2303.4Semi standard non polar33892256
Vanilpyruvic acid,1TBDMS,isomer #2COC1=CC(CC(=O)C(=O)O[Si](C)(C)C(C)(C)C)=CC=C1O2223.8Semi standard non polar33892256
Vanilpyruvic acid,1TBDMS,isomer #3COC1=CC(C=C(O[Si](C)(C)C(C)(C)C)C(=O)O)=CC=C1O2409.5Semi standard non polar33892256
Vanilpyruvic acid,2TBDMS,isomer #1COC1=CC(CC(=O)C(=O)O[Si](C)(C)C(C)(C)C)=CC=C1O[Si](C)(C)C(C)(C)C2515.3Semi standard non polar33892256
Vanilpyruvic acid,2TBDMS,isomer #2COC1=CC(C=C(O[Si](C)(C)C(C)(C)C)C(=O)O)=CC=C1O[Si](C)(C)C(C)(C)C2701.8Semi standard non polar33892256
Vanilpyruvic acid,2TBDMS,isomer #3COC1=CC(C=C(O[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C)=CC=C1O2598.1Semi standard non polar33892256
Vanilpyruvic acid,3TBDMS,isomer #1COC1=CC(C=C(O[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C)=CC=C1O[Si](C)(C)C(C)(C)C2854.1Semi standard non polar33892256
Vanilpyruvic acid,3TBDMS,isomer #1COC1=CC(C=C(O[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C)=CC=C1O[Si](C)(C)C(C)(C)C2792.1Standard non polar33892256
Vanilpyruvic acid,3TBDMS,isomer #1COC1=CC(C=C(O[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C)=CC=C1O[Si](C)(C)C(C)(C)C2596.7Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Vanilpyruvic acid GC-MS (Non-derivatized) - 70eV, Positivesplash10-000i-3900000000-dafbcec2d38954fef85e2017-07-27Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Vanilpyruvic acid GC-MS (2 TMS) - 70eV, Positivesplash10-00ri-9432000000-3d55712bbfe9bdc7e3232017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Vanilpyruvic acid GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Vanilpyruvic acid 10V, Positive-QTOFsplash10-029f-0930000000-0b172389e3c947156f732016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Vanilpyruvic acid 20V, Positive-QTOFsplash10-029l-0900000000-ad02a787e85a9f49fb5e2016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Vanilpyruvic acid 40V, Positive-QTOFsplash10-052r-2900000000-940a4f4bf06342206ef62016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Vanilpyruvic acid 10V, Negative-QTOFsplash10-0a4i-1590000000-e50dd99429a7ccc4dc9c2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Vanilpyruvic acid 20V, Negative-QTOFsplash10-07bf-1910000000-34be49b6f1e377c3b80a2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Vanilpyruvic acid 40V, Negative-QTOFsplash10-01ot-2900000000-38792c690b55d020d8152016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Vanilpyruvic acid 10V, Negative-QTOFsplash10-0ab9-5490000000-87ff334d9c765af556b72021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Vanilpyruvic acid 20V, Negative-QTOFsplash10-00di-1900000000-9a789246b1b70fb792b72021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Vanilpyruvic acid 40V, Negative-QTOFsplash10-006y-5900000000-41ded4bdb04a6a46395b2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Vanilpyruvic acid 10V, Positive-QTOFsplash10-01p9-0940000000-063224a36815c236d0d32021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Vanilpyruvic acid 20V, Positive-QTOFsplash10-052r-0900000000-b1b3201ed43aec49a25a2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Vanilpyruvic acid 40V, Positive-QTOFsplash10-0a4r-4900000000-98f11828d3fafa8b3c112021-09-22Wishart LabView Spectrum

IR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M-H]-)2023-02-03FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+)2023-02-03FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+)2023-02-03FELIX labView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Urine
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
UrineDetected and Quantified10 +/- 2 umol/mmol creatinineInfant (0-1 year old)MaleAromatic L-amino acid decarboxylase deficiency details
Associated Disorders and Diseases
Disease References
Aromatic L-amino acid decarboxylase deficiency
  1. Abdenur JE, Abeling N, Specola N, Jorge L, Schenone AB, van Cruchten AC, Chamoles NA: Aromatic l-aminoacid decarboxylase deficiency: unusual neonatal presentation and additional findings in organic acid analysis. Mol Genet Metab. 2006 Jan;87(1):48-53. Epub 2005 Nov 9. [PubMed:16288991 ]
Associated OMIM IDs
  • 608643 (Aromatic L-amino acid decarboxylase deficiency)
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB028400
KNApSAcK IDNot Available
Chemspider ID13501
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound14124
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Abdenur JE, Abeling N, Specola N, Jorge L, Schenone AB, van Cruchten AC, Chamoles NA: Aromatic l-aminoacid decarboxylase deficiency: unusual neonatal presentation and additional findings in organic acid analysis. Mol Genet Metab. 2006 Jan;87(1):48-53. Epub 2005 Nov 9. [PubMed:16288991 ]
  2. Brunk E, Sahoo S, Zielinski DC, Altunkaya A, Drager A, Mih N, Gatto F, Nilsson A, Preciat Gonzalez GA, Aurich MK, Prlic A, Sastry A, Danielsdottir AD, Heinken A, Noronha A, Rose PW, Burley SK, Fleming RMT, Nielsen J, Thiele I, Palsson BO: Recon3D enables a three-dimensional view of gene variation in human metabolism. Nat Biotechnol. 2018 Mar;36(3):272-281. doi: 10.1038/nbt.4072. Epub 2018 Feb 19. [PubMed:29457794 ]

Enzymes

General function:
Involved in transferase activity, transferring hexosyl groups
Specific function:
UDPGT is of major importance in the conjugation and subsequent elimination of potentially toxic xenobiotics and endogenous compounds. This isoform glucuronidates bilirubin IX-alpha to form both the IX-alpha-C8 and IX-alpha-C12 monoconjugates and diconjugate. Is also able to catalyze the glucuronidation of 17beta-estradiol, 17alpha-ethinylestradiol, 1-hydroxypyrene, 4-methylumbelliferone, 1-naphthol, paranitrophenol, scopoletin, and umbelliferone.
Gene Name:
UGT1A1
Uniprot ID:
P22309
Molecular weight:
59590.91
Reactions
Vanilpyruvic acid → 6-[4-(2-carboxy-2-oxoethyl)-2-methoxyphenoxy]-3,4,5-trihydroxyoxane-2-carboxylic aciddetails
Vanilpyruvic acid → 3,4,5-trihydroxy-6-{[3-(4-hydroxy-3-methoxyphenyl)-2-oxopropanoyl]oxy}oxane-2-carboxylic aciddetails
General function:
sulfotransferase activity
Specific function:
Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor to catalyze the sulfate conjugation of phenolic monoamines (neurotransmitters such as dopamine, norepinephrine and serotonin) and phenolic and catechol drugs.
Gene Name:
SULT1A3
Uniprot ID:
P0DMM9
Molecular weight:
34195.96
Reactions
Vanilpyruvic acid → 3-[3-methoxy-4-(sulfooxy)phenyl]-2-oxopropanoic aciddetails