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Record Information

Version

5.0

Status

Detected and Quantified

Creation Date

2010-02-22 10:59:03 UTC

Update Date

2022-10-24 19:44:12 UTC

HMDB ID

HMDB0013330

Secondary Accession Numbers

HMDB13330

Metabolite Identification

Common Name

3-Hydroxy-cis-5-tetradecenoylcarnitine

Description

3-Hydroxy-cis-5-tetradecenoylcarnitine is an acylcarnitine. More specifically, it is an (5Z)-3-hydroxytetradec-5-enoic acid ester of carnitine. Acylcarnitines were first discovered more than 70 year ago (PMID: 13825279 ). It is believed that there are more than 1000 types of acylcarnitines in the human body. The general role of acylcarnitines is to transport acyl-groups (organic acids and fatty acids) from the cytoplasm into the mitochondria so that they can be broken down to produce energy. This process is known as beta-oxidation. According to a recent review (PMID: 35710135 ), acylcarnitines (ACs) can be classified into 9 different categories depending on the type and size of their acyl-group: 1) short-chain ACs; 2) medium-chain ACs; 3) long-chain ACs; 4) very long-chain ACs; 5) hydroxy ACs; 6) branched chain ACs; 7) unsaturated ACs; 8) dicarboxylic ACs and 9) miscellaneous ACs. Short-chain ACs have acyl-groups with two to five carbons (C2-C5), medium-chain ACs have acyl-groups with six to thirteen carbons (C6-C13), long-chain ACs have acyl-groups with fourteen to twenty once carbons (C14-C21) and very long-chain ACs have acyl groups with more than 22 carbons. 3-Hydroxy-cis-5-tetradecenoylcarnitine is therefore classified as a long chain AC. As a long-chain acylcarnitine 3-hydroxy-cis-5-tetradecenoylcarnitine is generally formed through esterification with long-chain fatty acids obtained from the diet. The main function of most long-chain acylcarnitines is to ensure long chain fatty acid transport into the mitochondria (PMID: 22804748 ). Altered levels of long-chain acylcarnitines can serve as useful markers for inherited disorders of long-chain fatty acid metabolism. In particular 3-hydroxy-cis-5-tetradecenoylcarnitine is elevated in the blood or plasma of individuals with psoriasis (PMID: 33391503 ) and coronary artery disease (PMID: 20173117 ). 3-Hydroxy-cis-5-tetradecenoylcarnitine is elevated in the urine of individuals with obstructive sleep apnea (https://doi.org/10.1007/s11306-017-1216-9) and mitochondrial trifunctional protein deficiency (PMID: 19880769 ). Carnitine palmitoyltransferase I (CPT I, EC:2.3.1.21) is involved in the synthesis of long-chain acylcarnitines (more than C12) on the mitochondrial outer membrane. Elevated serum/plasma levels of long-chain acylcarnitines are not only markers for incomplete FA oxidation but also are indicators of altered carbohydrate and lipid metabolism. High serum concentrations of long-chain acylcarnitines in the postprandial or fed state are markers of insulin resistance and arise from insulin's inability to inhibit CPT-1-dependent fatty acid metabolism in muscles and the heart (PMID: 19073774 ). Increased intracellular content of long-chain acylcarnitines is thought to serve as a feedback inhibition mechanism of insulin action (PMID: 23258903 ). In healthy subjects, increased concentrations of insulin effectively inhibits long-chain acylcarnitine production. Several studies have also found increased levels of circulating long-chain acylcarnitines in chronic heart failure patients (PMID: 26796394 ). The study of acylcarnitines is an active area of research and it is likely that many novel acylcarnitines will be discovered in the coming years. It is also likely that many novel roles in health and disease will be uncovered. An excellent review of the current state of knowledge for acylcarnitines is available (PMID: 35710135 ).

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

  Mrv1652301312018062D          

 27 26  0  0  1  0            999 V2000
   15.0423   -1.6441    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.5615   -1.0030    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   14.2276   -1.5150    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
   13.4127   -1.3860    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.0984   -2.3299    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.3566   -0.7002    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.3764   -1.1320    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.8956   -0.4909    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.6000    0.2793    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
   17.7105   -0.6199    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.8561    0.2229    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.7127    0.6354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.4272    0.2229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.1417    0.6354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.1417    1.4605    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.9982    0.2229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.9982   -0.6021    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.2837   -1.0146    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.5692   -0.6021    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.8548   -1.0146    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1403   -0.6021    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4258   -1.0146    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7114   -0.6021    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9968   -1.0146    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2824   -0.6021    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5679   -1.0146    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.7127    1.4604    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  1  3  1  0  0  0  0
  4  3  1  0  0  0  0
  5  3  1  0  0  0  0
  6  3  1  0  0  0  0
  7  2  1  0  0  0  0
  9  8  1  0  0  0  0
  8 10  2  0  0  0  0
  7  8  1  0  0  0  0
 13 12  1  0  0  0  0
 14 13  1  0  0  0  0
 11 14  1  0  0  0  0
 15 14  2  0  0  0  0
 16 12  1  0  0  0  0
 17 16  1  0  0  0  0
 18 17  2  0  0  0  0
 19 18  1  0  0  0  0
 20 19  1  0  0  0  0
 21 20  1  0  0  0  0
 22 21  1  0  0  0  0
 23 22  1  0  0  0  0
 24 23  1  0  0  0  0
 25 24  1  0  0  0  0
 26 25  1  0  0  0  0
 27 12  1  0  0  0  0
  2 11  1  6  0  0  0
M  CHG  2   3   1   9  -1
M  END

HMDB0013330
     RDKit          3D
3-Hydroxy-cis-5-tetradecenoylcarnitine
 66 65  0  0  0  0  0  0  0  0999 V2000
    8.4613   -0.3093    0.7310 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6719    0.8972   -0.0937 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5191    1.6980   -0.5431 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5389    1.0127   -1.4100 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7816   -0.1301   -0.8377 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9686    0.3943    0.3283 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1787   -0.6681    1.0099 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1774   -1.3682    0.1104 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2421   -0.3516   -0.3804 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9437   -0.3166   -0.2025 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2275   -1.3676    0.5634 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4386   -0.6974    1.7341 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4877   -0.0598    2.5571 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5669    0.1780    1.2993 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6146   -0.6271    0.6308 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6047   -1.8800    0.5352 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7295   -0.0268    0.0379 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7487   -0.7802   -0.6096 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.8951   -0.4401   -2.0441 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9274   -1.2393   -2.7429 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4212   -0.8793   -3.8490 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3928   -2.4255   -2.2054 O   0  0  0  0  0  1  0  0  0  0  0  0
   -6.0283   -0.6509    0.1519 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5698    0.6372    0.3347 N   0  0  0  0  0  4  0  0  0  0  0  0
   -5.6822    1.7341    0.5050 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3470    0.5742    1.5996 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5604    0.9828   -0.6885 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3234   -0.4444    1.4836 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5835   -1.2508    0.1137 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5759   -0.3565    1.3584 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.3096    0.6674   -1.0106 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.3842    1.5646    0.5011 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0313    2.2373    0.3175 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9499    2.5487   -1.1670 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0930    0.6487   -2.3155 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7723    1.7725   -1.7754 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0937   -0.5026   -1.6499 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3588   -0.9946   -0.5348 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3165    1.2177   -0.0717 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6455    0.8736    1.0421 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8979   -1.4655    1.3336 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6447   -0.2366    1.8623 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7541   -2.1814    0.7105 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7312   -1.8042   -0.7649 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6508    0.4866   -0.9684 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3083    0.4853   -0.6084 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8379   -2.2265    0.8526 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5189   -1.7849   -0.1780 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9031   -1.4945    2.4061 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4611   -0.3492    3.4993 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0174    0.7100    2.1967 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1844    0.9919    0.6459 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4518   -1.8460   -0.5368 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1996    0.6307   -2.2395 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9468   -0.6016   -2.6168 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8359   -1.1597    1.1527 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7921   -1.2971   -0.3147 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3341    2.6604    0.5315 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9544    1.9276   -0.2753 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2189    1.7311    1.5368 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5996    0.7484    2.4004 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7776   -0.4578    1.6905 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1084    1.3566    1.5900 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4281    1.5095   -0.2211 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1653    1.7048   -1.4325 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9590    0.0900   -1.1798 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 12 14  1  0
 14 15  1  0
 15 16  2  0
 15 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  2  0
 20 22  1  0
 18 23  1  0
 23 24  1  0
 24 25  1  0
 24 26  1  0
 24 27  1  0
  1 28  1  0
  1 29  1  0
  1 30  1  0
  2 31  1  0
  2 32  1  0
  3 33  1  0
  3 34  1  0
  4 35  1  0
  4 36  1  0
  5 37  1  0
  5 38  1  0
  6 39  1  0
  6 40  1  0
  7 41  1  0
  7 42  1  0
  8 43  1  0
  8 44  1  0
  9 45  1  0
 10 46  1  0
 11 47  1  0
 11 48  1  0
 12 49  1  0
 13 50  1  0
 14 51  1  0
 14 52  1  0
 18 53  1  6
 19 54  1  0
 19 55  1  0
 23 56  1  0
 23 57  1  0
 25 58  1  0
 25 59  1  0
 25 60  1  0
 26 61  1  0
 26 62  1  0
 26 63  1  0
 27 64  1  0
 27 65  1  0
 27 66  1  0
M  CHG  2  22  -1  24   1
M  END

  Mrv1652301312018062D          

 27 26  0  0  1  0            999 V2000
   15.0423   -1.6441    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.5615   -1.0030    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   14.2276   -1.5150    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
   13.4127   -1.3860    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.0984   -2.3299    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.3566   -0.7002    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.3764   -1.1320    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.8956   -0.4909    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.6000    0.2793    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
   17.7105   -0.6199    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.8561    0.2229    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.7127    0.6354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.4272    0.2229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.1417    0.6354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.1417    1.4605    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.9982    0.2229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.9982   -0.6021    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.2837   -1.0146    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.5692   -0.6021    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.8548   -1.0146    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1403   -0.6021    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4258   -1.0146    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7114   -0.6021    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9968   -1.0146    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2824   -0.6021    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5679   -1.0146    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.7127    1.4604    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  1  3  1  0  0  0  0
  4  3  1  0  0  0  0
  5  3  1  0  0  0  0
  6  3  1  0  0  0  0
  7  2  1  0  0  0  0
  9  8  1  0  0  0  0
  8 10  2  0  0  0  0
  7  8  1  0  0  0  0
 13 12  1  0  0  0  0
 14 13  1  0  0  0  0
 11 14  1  0  0  0  0
 15 14  2  0  0  0  0
 16 12  1  0  0  0  0
 17 16  1  0  0  0  0
 18 17  2  0  0  0  0
 19 18  1  0  0  0  0
 20 19  1  0  0  0  0
 21 20  1  0  0  0  0
 22 21  1  0  0  0  0
 23 22  1  0  0  0  0
 24 23  1  0  0  0  0
 25 24  1  0  0  0  0
 26 25  1  0  0  0  0
 27 12  1  0  0  0  0
  2 11  1  6  0  0  0
M  CHG  2   3   1   9  -1
M  END
> <DATABASE_ID>
HMDB0013330

> <DATABASE_NAME>
hmdb

> <SMILES>
CCCCCCCC\C=C/CC(O)CC(=O)O[C@H](CC([O-])=O)C[N+](C)(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C21H39NO5/c1-5-6-7-8-9-10-11-12-13-14-18(23)15-21(26)27-19(16-20(24)25)17-22(2,3)4/h12-13,18-19,23H,5-11,14-17H2,1-4H3/b13-12-/t18?,19-/m1/s1

> <INCHI_KEY>
CJMUXNONVZSQIX-ZDOLJLSUSA-N

> <FORMULA>
C21H39NO5

> <MOLECULAR_WEIGHT>
385.545

> <EXACT_MASS>
385.28282336

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
66

> <JCHEM_AVERAGE_POLARIZABILITY>
45.36896007603791

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(3R)-3-{[(5Z)-3-hydroxytetradec-5-enoyl]oxy}-4-(trimethylazaniumyl)butanoate

> <ALOGPS_LOGP>
-0.82

> <JCHEM_LOGP>
-0.44832219947174545

> <ALOGPS_LOGS>
-6.02

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.944515895505177

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.11961580225018

> <JCHEM_PKA_STRONGEST_BASIC>
-2.8230690316042564

> <JCHEM_POLAR_SURFACE_AREA>
86.66000000000001

> <JCHEM_REFRACTIVITY>
130.5068

> <JCHEM_ROTATABLE_BOND_COUNT>
17

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
4.18e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3R)-3-{[(5Z)-3-hydroxytetradec-5-enoyl]oxy}-4-(trimethylammonio)butanoate

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0013330
     RDKit          3D
3-Hydroxy-cis-5-tetradecenoylcarnitine
 66 65  0  0  0  0  0  0  0  0999 V2000
    8.4613   -0.3093    0.7310 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6719    0.8972   -0.0937 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5191    1.6980   -0.5431 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5389    1.0127   -1.4100 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7816   -0.1301   -0.8377 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9686    0.3943    0.3283 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1787   -0.6681    1.0099 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1774   -1.3682    0.1104 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2421   -0.3516   -0.3804 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9437   -0.3166   -0.2025 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2275   -1.3676    0.5634 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4386   -0.6974    1.7341 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4877   -0.0598    2.5571 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5669    0.1780    1.2993 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6146   -0.6271    0.6308 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6047   -1.8800    0.5352 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7295   -0.0268    0.0379 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7487   -0.7802   -0.6096 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.8951   -0.4401   -2.0441 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9274   -1.2393   -2.7429 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4212   -0.8793   -3.8490 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3928   -2.4255   -2.2054 O   0  0  0  0  0  1  0  0  0  0  0  0
   -6.0283   -0.6509    0.1519 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5698    0.6372    0.3347 N   0  0  0  0  0  4  0  0  0  0  0  0
   -5.6822    1.7341    0.5050 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3470    0.5742    1.5996 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5604    0.9828   -0.6885 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3234   -0.4444    1.4836 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5835   -1.2508    0.1137 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5759   -0.3565    1.3584 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.3096    0.6674   -1.0106 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.3842    1.5646    0.5011 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0313    2.2373    0.3175 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9499    2.5487   -1.1670 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0930    0.6487   -2.3155 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7723    1.7725   -1.7754 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0937   -0.5026   -1.6499 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3588   -0.9946   -0.5348 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3165    1.2177   -0.0717 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6455    0.8736    1.0421 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8979   -1.4655    1.3336 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6447   -0.2366    1.8623 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7541   -2.1814    0.7105 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7312   -1.8042   -0.7649 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6508    0.4866   -0.9684 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3083    0.4853   -0.6084 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8379   -2.2265    0.8526 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5189   -1.7849   -0.1780 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9031   -1.4945    2.4061 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4611   -0.3492    3.4993 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0174    0.7100    2.1967 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1844    0.9919    0.6459 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4518   -1.8460   -0.5368 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1996    0.6307   -2.2395 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9468   -0.6016   -2.6168 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8359   -1.1597    1.1527 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7921   -1.2971   -0.3147 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3341    2.6604    0.5315 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9544    1.9276   -0.2753 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2189    1.7311    1.5368 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5996    0.7484    2.4004 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7776   -0.4578    1.6905 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1084    1.3566    1.5900 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4281    1.5095   -0.2211 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1653    1.7048   -1.4325 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9590    0.0900   -1.1798 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 12 14  1  0
 14 15  1  0
 15 16  2  0
 15 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  2  0
 20 22  1  0
 18 23  1  0
 23 24  1  0
 24 25  1  0
 24 26  1  0
 24 27  1  0
  1 28  1  0
  1 29  1  0
  1 30  1  0
  2 31  1  0
  2 32  1  0
  3 33  1  0
  3 34  1  0
  4 35  1  0
  4 36  1  0
  5 37  1  0
  5 38  1  0
  6 39  1  0
  6 40  1  0
  7 41  1  0
  7 42  1  0
  8 43  1  0
  8 44  1  0
  9 45  1  0
 10 46  1  0
 11 47  1  0
 11 48  1  0
 12 49  1  0
 13 50  1  0
 14 51  1  0
 14 52  1  0
 18 53  1  6
 19 54  1  0
 19 55  1  0
 23 56  1  0
 23 57  1  0
 25 58  1  0
 25 59  1  0
 25 60  1  0
 26 61  1  0
 26 62  1  0
 26 63  1  0
 27 64  1  0
 27 65  1  0
 27 66  1  0
M  CHG  2  22  -1  24   1
M  END

HEADER    PROTEIN                                 31-JAN-20   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   31-JAN-20         0                                  
HETATM    1  C   UNK     0      28.079  -3.069   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      29.048  -1.872   0.000  0.00  0.00           C+0
HETATM    3  N   UNK     0      26.558  -2.828   0.000  0.00  0.00           N+1
HETATM    4  C   UNK     0      25.037  -2.587   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      26.317  -4.349   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      26.799  -1.307   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      30.569  -2.113   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      31.538  -0.916   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0      30.987   0.521   0.000  0.00  0.00           O-1
HETATM   10  O   UNK     0      33.060  -1.157   0.000  0.00  0.00           O+0
HETATM   11  O   UNK     0      27.731   0.416   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0      23.730   1.186   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      25.064   0.416   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      26.398   1.186   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      26.398   2.726   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0      22.397   0.416   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      22.397  -1.124   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      21.063  -1.894   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      19.729  -1.124   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      18.396  -1.894   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      17.062  -1.124   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      15.728  -1.894   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      14.395  -1.124   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      13.061  -1.894   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      11.727  -1.124   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      10.393  -1.894   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0      23.730   2.726   0.000  0.00  0.00           O+0
CONECT    1    2    3                                                       
CONECT    2    1    7   11                                                  
CONECT    3    1    4    5    6                                             
CONECT    4    3                                                            
CONECT    5    3                                                            
CONECT    6    3                                                            
CONECT    7    2    8                                                       
CONECT    8    9   10    7                                                  
CONECT    9    8                                                            
CONECT   10    8                                                            
CONECT   11   14    2                                                       
CONECT   12   13   16   27                                                  
CONECT   13   12   14                                                       
CONECT   14   13   11   15                                                  
CONECT   15   14                                                            
CONECT   16   12   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25                                                            
CONECT   27   12                                                            
MASTER        0    0    0    0    0    0    0    0   27    0   52    0
END

COMPND    HMDB0013330
HETATM    1  C1  UNL     1       8.461  -0.309   0.731  1.00  0.00           C  
HETATM    2  C2  UNL     1       8.672   0.897  -0.094  1.00  0.00           C  
HETATM    3  C3  UNL     1       7.519   1.698  -0.543  1.00  0.00           C  
HETATM    4  C4  UNL     1       6.539   1.013  -1.410  1.00  0.00           C  
HETATM    5  C5  UNL     1       5.782  -0.130  -0.838  1.00  0.00           C  
HETATM    6  C6  UNL     1       4.969   0.394   0.328  1.00  0.00           C  
HETATM    7  C7  UNL     1       4.179  -0.668   1.010  1.00  0.00           C  
HETATM    8  C8  UNL     1       3.177  -1.368   0.110  1.00  0.00           C  
HETATM    9  C9  UNL     1       2.242  -0.352  -0.380  1.00  0.00           C  
HETATM   10  C10 UNL     1       0.944  -0.317  -0.202  1.00  0.00           C  
HETATM   11  C11 UNL     1       0.227  -1.368   0.563  1.00  0.00           C  
HETATM   12  C12 UNL     1      -0.439  -0.697   1.734  1.00  0.00           C  
HETATM   13  O1  UNL     1       0.488  -0.060   2.557  1.00  0.00           O  
HETATM   14  C13 UNL     1      -1.567   0.178   1.299  1.00  0.00           C  
HETATM   15  C14 UNL     1      -2.615  -0.627   0.631  1.00  0.00           C  
HETATM   16  O2  UNL     1      -2.605  -1.880   0.535  1.00  0.00           O  
HETATM   17  O3  UNL     1      -3.730  -0.027   0.038  1.00  0.00           O  
HETATM   18  C15 UNL     1      -4.749  -0.780  -0.610  1.00  0.00           C  
HETATM   19  C16 UNL     1      -4.895  -0.440  -2.044  1.00  0.00           C  
HETATM   20  C17 UNL     1      -5.927  -1.239  -2.743  1.00  0.00           C  
HETATM   21  O4  UNL     1      -6.421  -0.879  -3.849  1.00  0.00           O  
HETATM   22  O5  UNL     1      -6.393  -2.426  -2.205  1.00  0.00           O1-
HETATM   23  C18 UNL     1      -6.028  -0.651   0.152  1.00  0.00           C  
HETATM   24  N1  UNL     1      -6.570   0.637   0.335  1.00  0.00           N1+
HETATM   25  C19 UNL     1      -5.682   1.734   0.505  1.00  0.00           C  
HETATM   26  C20 UNL     1      -7.347   0.574   1.600  1.00  0.00           C  
HETATM   27  C21 UNL     1      -7.560   0.983  -0.688  1.00  0.00           C  
HETATM   28  H1  UNL     1       9.323  -0.444   1.484  1.00  0.00           H  
HETATM   29  H2  UNL     1       8.584  -1.251   0.114  1.00  0.00           H  
HETATM   30  H3  UNL     1       7.576  -0.356   1.358  1.00  0.00           H  
HETATM   31  H4  UNL     1       9.310   0.667  -1.011  1.00  0.00           H  
HETATM   32  H5  UNL     1       9.384   1.565   0.501  1.00  0.00           H  
HETATM   33  H6  UNL     1       7.031   2.237   0.318  1.00  0.00           H  
HETATM   34  H7  UNL     1       7.950   2.549  -1.167  1.00  0.00           H  
HETATM   35  H8  UNL     1       7.093   0.649  -2.316  1.00  0.00           H  
HETATM   36  H9  UNL     1       5.772   1.772  -1.775  1.00  0.00           H  
HETATM   37  H10 UNL     1       5.094  -0.503  -1.650  1.00  0.00           H  
HETATM   38  H11 UNL     1       6.359  -0.995  -0.535  1.00  0.00           H  
HETATM   39  H12 UNL     1       4.317   1.218  -0.072  1.00  0.00           H  
HETATM   40  H13 UNL     1       5.646   0.874   1.042  1.00  0.00           H  
HETATM   41  H14 UNL     1       4.898  -1.465   1.334  1.00  0.00           H  
HETATM   42  H15 UNL     1       3.645  -0.237   1.862  1.00  0.00           H  
HETATM   43  H16 UNL     1       2.754  -2.181   0.710  1.00  0.00           H  
HETATM   44  H17 UNL     1       3.731  -1.804  -0.765  1.00  0.00           H  
HETATM   45  H18 UNL     1       2.651   0.487  -0.968  1.00  0.00           H  
HETATM   46  H19 UNL     1       0.308   0.485  -0.608  1.00  0.00           H  
HETATM   47  H20 UNL     1       0.838  -2.226   0.853  1.00  0.00           H  
HETATM   48  H21 UNL     1      -0.519  -1.785  -0.178  1.00  0.00           H  
HETATM   49  H22 UNL     1      -0.903  -1.495   2.406  1.00  0.00           H  
HETATM   50  H23 UNL     1       0.461  -0.349   3.499  1.00  0.00           H  
HETATM   51  H24 UNL     1      -2.017   0.710   2.197  1.00  0.00           H  
HETATM   52  H25 UNL     1      -1.184   0.992   0.646  1.00  0.00           H  
HETATM   53  H26 UNL     1      -4.452  -1.846  -0.537  1.00  0.00           H  
HETATM   54  H27 UNL     1      -5.200   0.631  -2.239  1.00  0.00           H  
HETATM   55  H28 UNL     1      -3.947  -0.602  -2.617  1.00  0.00           H  
HETATM   56  H29 UNL     1      -5.836  -1.160   1.153  1.00  0.00           H  
HETATM   57  H30 UNL     1      -6.792  -1.297  -0.315  1.00  0.00           H  
HETATM   58  H31 UNL     1      -6.334   2.660   0.532  1.00  0.00           H  
HETATM   59  H32 UNL     1      -4.954   1.928  -0.275  1.00  0.00           H  
HETATM   60  H33 UNL     1      -5.219   1.731   1.537  1.00  0.00           H  
HETATM   61  H34 UNL     1      -6.600   0.748   2.400  1.00  0.00           H  
HETATM   62  H35 UNL     1      -7.778  -0.458   1.690  1.00  0.00           H  
HETATM   63  H36 UNL     1      -8.108   1.357   1.590  1.00  0.00           H  
HETATM   64  H37 UNL     1      -8.428   1.510  -0.221  1.00  0.00           H  
HETATM   65  H38 UNL     1      -7.165   1.705  -1.432  1.00  0.00           H  
HETATM   66  H39 UNL     1      -7.959   0.090  -1.180  1.00  0.00           H  
CONECT    1    2   28   29   30
CONECT    2    3   31   32
CONECT    3    4   33   34
CONECT    4    5   35   36
CONECT    5    6   37   38
CONECT    6    7   39   40
CONECT    7    8   41   42
CONECT    8    9   43   44
CONECT    9   10   10   45
CONECT   10   11   46
CONECT   11   12   47   48
CONECT   12   13   14   49
CONECT   13   50
CONECT   14   15   51   52
CONECT   15   16   16   17
CONECT   17   18
CONECT   18   19   23   53
CONECT   19   20   54   55
CONECT   20   21   21   22
CONECT   23   24   56   57
CONECT   24   25   26   27
CONECT   25   58   59   60
CONECT   26   61   62   63
CONECT   27   64   65   66
END

HMDB0013330
     RDKit          3D
3-Hydroxy-cis-5-tetradecenoylcarnitine
 66 65  0  0  0  0  0  0  0  0999 V2000
    8.4613   -0.3093    0.7310 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6719    0.8972   -0.0937 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5191    1.6980   -0.5431 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5389    1.0127   -1.4100 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7816   -0.1301   -0.8377 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9686    0.3943    0.3283 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1787   -0.6681    1.0099 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1774   -1.3682    0.1104 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2421   -0.3516   -0.3804 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9437   -0.3166   -0.2025 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2275   -1.3676    0.5634 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4386   -0.6974    1.7341 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4877   -0.0598    2.5571 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5669    0.1780    1.2993 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6146   -0.6271    0.6308 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6047   -1.8800    0.5352 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7295   -0.0268    0.0379 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7487   -0.7802   -0.6096 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.8951   -0.4401   -2.0441 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9274   -1.2393   -2.7429 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4212   -0.8793   -3.8490 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3928   -2.4255   -2.2054 O   0  0  0  0  0  1  0  0  0  0  0  0
   -6.0283   -0.6509    0.1519 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5698    0.6372    0.3347 N   0  0  0  0  0  4  0  0  0  0  0  0
   -5.6822    1.7341    0.5050 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3470    0.5742    1.5996 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5604    0.9828   -0.6885 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3234   -0.4444    1.4836 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5835   -1.2508    0.1137 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5759   -0.3565    1.3584 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.3096    0.6674   -1.0106 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.3842    1.5646    0.5011 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0313    2.2373    0.3175 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9499    2.5487   -1.1670 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0930    0.6487   -2.3155 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7723    1.7725   -1.7754 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0937   -0.5026   -1.6499 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3588   -0.9946   -0.5348 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3165    1.2177   -0.0717 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6455    0.8736    1.0421 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8979   -1.4655    1.3336 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6447   -0.2366    1.8623 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7541   -2.1814    0.7105 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7312   -1.8042   -0.7649 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6508    0.4866   -0.9684 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3083    0.4853   -0.6084 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8379   -2.2265    0.8526 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5189   -1.7849   -0.1780 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9031   -1.4945    2.4061 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4611   -0.3492    3.4993 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0174    0.7100    2.1967 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1844    0.9919    0.6459 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4518   -1.8460   -0.5368 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1996    0.6307   -2.2395 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9468   -0.6016   -2.6168 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8359   -1.1597    1.1527 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7921   -1.2971   -0.3147 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3341    2.6604    0.5315 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9544    1.9276   -0.2753 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2189    1.7311    1.5368 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5996    0.7484    2.4004 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7776   -0.4578    1.6905 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1084    1.3566    1.5900 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4281    1.5095   -0.2211 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1653    1.7048   -1.4325 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9590    0.0900   -1.1798 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 12 14  1  0
 14 15  1  0
 15 16  2  0
 15 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  2  0
 20 22  1  0
 18 23  1  0
 23 24  1  0
 24 25  1  0
 24 26  1  0
 24 27  1  0
  1 28  1  0
  1 29  1  0
  1 30  1  0
  2 31  1  0
  2 32  1  0
  3 33  1  0
  3 34  1  0
  4 35  1  0
  4 36  1  0
  5 37  1  0
  5 38  1  0
  6 39  1  0
  6 40  1  0
  7 41  1  0
  7 42  1  0
  8 43  1  0
  8 44  1  0
  9 45  1  0
 10 46  1  0
 11 47  1  0
 11 48  1  0
 12 49  1  0
 13 50  1  0
 14 51  1  0
 14 52  1  0
 18 53  1  6
 19 54  1  0
 19 55  1  0
 23 56  1  0
 23 57  1  0
 25 58  1  0
 25 59  1  0
 25 60  1  0
 26 61  1  0
 26 62  1  0
 26 63  1  0
 27 64  1  0
 27 65  1  0
 27 66  1  0
M  CHG  2  22  -1  24   1
M  END

View in JSmol View NMR Assignments View Stereo Labels

Synonyms

Value	Source
(3R)-3-{[(5Z)-3-hydroxytetradec-5-enoyl]oxy}-4-(trimethylazaniumyl)butanoic acid	HMDB

Chemical Formula

C₂₁H₃₉NO₅

Average Molecular Weight

385.545

Monoisotopic Molecular Weight

385.28282336

IUPAC Name

(3R)-3-{[(5Z)-3-hydroxytetradec-5-enoyl]oxy}-4-(trimethylazaniumyl)butanoate

Traditional Name

(3R)-3-{[(5Z)-3-hydroxytetradec-5-enoyl]oxy}-4-(trimethylammonio)butanoate

CAS Registry Number

Not Available

SMILES

CCCCCCCC\C=C/CC(O)CC(=O)O[C@H](CC([O-])=O)C[N+](C)(C)C

InChI Identifier

InChI=1S/C21H39NO5/c1-5-6-7-8-9-10-11-12-13-14-18(23)15-21(26)27-19(16-20(24)25)17-22(2,3)4/h12-13,18-19,23H,5-11,14-17H2,1-4H3/b13-12-/t18?,19-/m1/s1

InChI Key

CJMUXNONVZSQIX-ZDOLJLSUSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as acyl carnitines. These are organic compounds containing a fatty acid with the carboxylic acid attached to carnitine through an ester bond.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty acid esters

Direct Parent

Acyl carnitines

Alternative Parents

Substituents

Acyl-carnitine
Beta-hydroxy acid
Hydroxy acid
Dicarboxylic acid or derivatives
Tetraalkylammonium salt
Quaternary ammonium salt
Secondary alcohol
Carboxylic acid salt
Carboxylic acid ester
Carboxylic acid
Carboxylic acid derivative
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Organic salt
Organic zwitterion
Organooxygen compound
Organonitrogen compound
Carbonyl group
Amine
Alcohol
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Disposition

Biological location

Non-excretory biofluid

Biofluid or Excreta

Blood (PMID: 32966057)

Excreta

Biofluid or Excreta

Urine (PMID: 24023812)
Feces (PMID: 27624970)

Cell

All cells and tissues (PMID: 35710135)

Cellular substructure

Cytoplasm (PMID: 35710135)
Mitochondrion matrix (PMID: 35710135)

Organelle

Peroxisome (PMID: 35710135)

Source

Endogenous

Endogenous (HMDB: HMDB0013330)

Pheasant (FooDB: FOOD00430)
Squab (FooDB: FOOD00481)
Turkey (FooDB: FOOD00494)
Quail (FooDB: FOOD00541)
Anatidae (FooDB: FOOD00576)
Rock ptarmigan (FooDB: FOOD00597)
Columbidae (Dove, Pigeon) (FooDB: FOOD00610)
Chicken (FooDB: FOOD00329)
Mallard duck (FooDB: FOOD00353)
Emu (FooDB: FOOD00360)
Greylag goose (FooDB: FOOD00368)
Guinea hen (FooDB: FOOD00373)
Ostrich (FooDB: FOOD00422)
Velvet duck (FooDB: FOOD00427)

Lagomorph

Ovis

Sheep (Mutton, Lamb) (FooDB: FOOD00473)

Bovine

Venison

Deer (FooDB: FOOD00524)
Mule deer (FooDB: FOOD00348)
Elk (FooDB: FOOD00359)

Caprae

Domestic goat (FooDB: FOOD00529)

Swine

Domestic pig (FooDB: FOOD00536)
Wild boar (FooDB: FOOD00307)

Equine

Horse (FooDB: FOOD00378)

Process

Not Available

Role

Biological role

Energy source (PMID: 35710135)

Industrial application

Pharmaceutical industry

Biomarker

Physical Properties

State

Solid

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
Water Solubility	0.00044 g/L	ALOGPS
logP	-0.82	ALOGPS
logP	-0.45	ChemAxon
logS	-6	ALOGPS
pKa (Strongest Acidic)	4.12	ChemAxon
pKa (Strongest Basic)	-2.8	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	86.66 Å²	ChemAxon
Rotatable Bond Count	17	ChemAxon
Refractivity	130.51 m³·mol⁻¹	ChemAxon
Polarizability	45.37 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M+H]+	202.275	30932474
DeepCCS	[M-H]-	199.015	30932474
DeepCCS	[M-2H]-	234.082	30932474
DeepCCS	[M+Na]+	210.249	30932474

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
3-Hydroxy-cis-5-tetradecenoylcarnitine	CCCCCCCC\C=C/CC(O)CC(=O)O[C@H](CC([O-])=O)C[N+](C)(C)C	3267.4	Standard polar	33892256
3-Hydroxy-cis-5-tetradecenoylcarnitine	CCCCCCCC\C=C/CC(O)CC(=O)O[C@H](CC([O-])=O)C[N+](C)(C)C	2395.3	Standard non polar	33892256
3-Hydroxy-cis-5-tetradecenoylcarnitine	CCCCCCCC\C=C/CC(O)CC(=O)O[C@H](CC([O-])=O)C[N+](C)(C)C	2648.7	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
3-Hydroxy-cis-5-tetradecenoylcarnitine,1TMS,isomer #1	CCCCCCCC/C=C\CC(CC(=O)O[C@H](CC(=O)[O-])C[N+](C)(C)C)O[Si](C)(C)C	2630.5	Semi standard non polar	33892256
3-Hydroxy-cis-5-tetradecenoylcarnitine,1TBDMS,isomer #1	CCCCCCCC/C=C\CC(CC(=O)O[C@H](CC(=O)[O-])C[N+](C)(C)C)O[Si](C)(C)C(C)(C)C	2864.1	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - 3-Hydroxy-cis-5-tetradecenoylcarnitine GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-Hydroxy-cis-5-tetradecenoylcarnitine 10V, Positive-QTOF	splash10-014u-0629000000-abe77ab30cd3e90176ab	2019-02-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-Hydroxy-cis-5-tetradecenoylcarnitine 20V, Positive-QTOF	splash10-0006-1911000000-2b29a3dd9ddd520395c6	2019-02-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-Hydroxy-cis-5-tetradecenoylcarnitine 40V, Positive-QTOF	splash10-0f6x-3900000000-bc36329763899fe4960e	2019-02-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-Hydroxy-cis-5-tetradecenoylcarnitine 10V, Negative-QTOF	splash10-001i-1029000000-0766a471c544e04064d5	2019-02-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-Hydroxy-cis-5-tetradecenoylcarnitine 20V, Negative-QTOF	splash10-003r-1779000000-38bc6372224504f869d8	2019-02-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-Hydroxy-cis-5-tetradecenoylcarnitine 40V, Negative-QTOF	splash10-006y-6960000000-514d0ad9154c9f54c2df	2019-02-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-Hydroxy-cis-5-tetradecenoylcarnitine 10V, Positive-QTOF	splash10-000i-0009000000-a8b58de4b8d9f7df3727	2021-09-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-Hydroxy-cis-5-tetradecenoylcarnitine 20V, Positive-QTOF	splash10-000i-9005000000-a4562145ebae869120b9	2021-09-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 3-Hydroxy-cis-5-tetradecenoylcarnitine 40V, Positive-QTOF	splash10-000i-9000000000-e9262cbaff8cb4ad0ba6	2021-09-21	Wishart Lab	View Spectrum

NMR Spectra

Spectrum Type	Description	Deposition Date	Source	View
Predicted 1D NMR	¹³C NMR Spectrum (1D, 100 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 200 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 300 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 400 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 500 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 600 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 700 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 800 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹³C NMR Spectrum (1D, 900 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum
Predicted 1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	2021-09-25	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Blood
Feces
Urine

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Biospecimen	Status	Value	Age	Sex	Condition	Reference	Details
Blood	Detected but not Quantified	Not Quantified	Adult (>18 years old)	Both	Normal	32966057	details
Blood	Detected and Quantified	0.015-0.030 uM	Adult (>18 years old)	Both	Normal	Molecular You	details
Blood	Expected but not Quantified	Not Quantified	Not Available	Not Available	Normal	Not Available	details
Feces	Detected and Quantified	0.21 +/- 0.17 nmol/g wet feces	Adult (>18 years old)	Both	Normal	27624970	details
Feces	Detected and Quantified	0.3 +/- 0.13 nmol/g wet feces	Adult (>18 years old)	Both	Normal	27624970	details
Urine	Detected and Quantified	0.0-0.01 umol/mmol creatinine	Newborn (0-30 days old)	Both	Normal	32340350	details
Urine	Detected and Quantified	0.01 +/- 0.0 umol/mmol creatinine	Newborn (0-30 days old)	Female	Normal	32340350	details
Urine	Detected and Quantified	0.01 +/- 0.0 umol/mmol creatinine	Newborn (0-30 days old)	Male	Normal	32340350	details
Urine	Detected and Quantified	0.0020 (0.0008-0.0040) umol/mmol creatinine	Adult (>18 years old)	Both	Normal	24023812	details
Urine	Detected and Quantified	2.89 +/- 0.10 umol/mmol creatinine	Adolescent (13-18 years old)	Both	Normal	26910390	details
Urine	Detected but not Quantified	Not Quantified	Adult (>18 years old)	Both	Normal	32966057	details

Abnormal Concentrations

Biospecimen	Status	Value	Age	Sex	Condition	Reference	Details
Blood	Detected and Quantified	0.013 +/- 0.004 uM	Children (1-13 years old)	Both	Obesity	Metabolomics reve...	details
Blood	Detected and Quantified	0.013 +/- 0.004 uM	Children (1-13 years old)	Both	Obesity	Metabolomics reve...	details
Urine	Detected and Quantified	2.52 +/- 0.08 umol/mmol creatinine	Adolescent (13-18 years old)	Both	Obese	26910390	details

Associated Disorders and Diseases

Disease References

Obesity

Cho K, Moon JS, Kang JH, Jang HB, Lee HJ, Park SI, Yu KS, Cho JY: Combined untargeted and targeted metabolomic profiling reveals urinary biomarkers for discriminating obese from normal-weight adolescents. Pediatr Obes. 2017 Apr;12(2):93-101. doi: 10.1111/ijpo.12114. Epub 2016 Feb 22. [PubMed:26910390 ]
Simone Wahl, Christina Holzapfel, Zhonghao Yu, Michaela Breier, Ivan Kondofersky, Christiane Fuchs, Paula Singmann, Cornelia Prehn, Jerzy Adamski, Harald Grallert, Thomas Illig, Rui Wang-Sattler, Thomas Reinehr (2013). Metabolomics reveals determinants of weight loss during lifestyle intervention in obese children. Metabolomics.

Associated OMIM IDs

601665 (Obesity)

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB029400

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

156908008

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

MDB00029836

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

FRITZ IB: Action of carnitine on long chain fatty acid oxidation by liver. Am J Physiol. 1959 Aug;197:297-304. doi: 10.1152/ajplegacy.1959.197.2.297. [PubMed:13825279 ]
Reuter SE, Evans AM: Carnitine and acylcarnitines: pharmacokinetic, pharmacological and clinical aspects. Clin Pharmacokinet. 2012 Sep 1;51(9):553-72. doi: 10.1007/BF03261931. [PubMed:22804748 ]
Bruce CR, Hoy AJ, Turner N, Watt MJ, Allen TL, Carpenter K, Cooney GJ, Febbraio MA, Kraegen EW: Overexpression of carnitine palmitoyltransferase-1 in skeletal muscle is sufficient to enhance fatty acid oxidation and improve high-fat diet-induced insulin resistance. Diabetes. 2009 Mar;58(3):550-8. doi: 10.2337/db08-1078. Epub 2008 Dec 10. [PubMed:19073774 ]
Schooneman MG, Vaz FM, Houten SM, Soeters MR: Acylcarnitines: reflecting or inflicting insulin resistance? Diabetes. 2013 Jan;62(1):1-8. doi: 10.2337/db12-0466. [PubMed:23258903 ]
Ahmad T, Kelly JP, McGarrah RW, Hellkamp AS, Fiuzat M, Testani JM, Wang TS, Verma A, Samsky MD, Donahue MP, Ilkayeva OR, Bowles DE, Patel CB, Milano CA, Rogers JG, Felker GM, O'Connor CM, Shah SH, Kraus WE: Prognostic Implications of Long-Chain Acylcarnitines in Heart Failure and Reversibility With Mechanical Circulatory Support. J Am Coll Cardiol. 2016 Jan 26;67(3):291-9. doi: 10.1016/j.jacc.2015.10.079. [PubMed:26796394 ]
Chen C, Hou G, Zeng C, Ren Y, Chen X, Peng C: Metabolomic profiling reveals amino acid and carnitine alterations as metabolic signatures in psoriasis. Theranostics. 2021 Jan 1;11(2):754-767. doi: 10.7150/thno.51154. eCollection 2021. [PubMed:33391503 ]
Shah SH, Bain JR, Muehlbauer MJ, Stevens RD, Crosslin DR, Haynes C, Dungan J, Newby LK, Hauser ER, Ginsburg GS, Newgard CB, Kraus WE: Association of a peripheral blood metabolic profile with coronary artery disease and risk of subsequent cardiovascular events. Circ Cardiovasc Genet. 2010 Apr;3(2):207-14. doi: 10.1161/CIRCGENETICS.109.852814. Epub 2010 Feb 19. [PubMed:20173117 ]
Park HD, Kim SR, Ki CS, Lee SY, Chang YS, Jin DK, Park WS: Two novel HADHB gene mutations in a Korean patient with mitochondrial trifunctional protein deficiency. Ann Clin Lab Sci. 2009 Fall;39(4):399-404. [PubMed:19880769 ]
Dambrova M, Makrecka-Kuka M, Kuka J, Vilskersts R, Nordberg D, Attwood MM, Smesny S, Sen ZD, Guo AC, Oler E, Tian S, Zheng J, Wishart DS, Liepinsh E, Schioth HB: Acylcarnitines: Nomenclature, Biomarkers, Therapeutic Potential, Drug Targets, and Clinical Trials. Pharmacol Rev. 2022 Jul;74(3):506-551. doi: 10.1124/pharmrev.121.000408. [PubMed:35710135 ]

Showing metabocard for 3-Hydroxy-cis-5-tetradecenoylcarnitine (HMDB0013330)

MOL for HMDB0013330 (3-Hydroxy-cis-5-tetradecenoylcarnitine)

3D MOL for HMDB0013330 (3-Hydroxy-cis-5-tetradecenoylcarnitine)

3D SDF for HMDB0013330 (3-Hydroxy-cis-5-tetradecenoylcarnitine)

3D-SDF for HMDB0013330 (3-Hydroxy-cis-5-tetradecenoylcarnitine)

PDB for HMDB0013330 (3-Hydroxy-cis-5-tetradecenoylcarnitine)

3D PDB for HMDB0013330 (3-Hydroxy-cis-5-tetradecenoylcarnitine)

SMILES for HMDB0013330 (3-Hydroxy-cis-5-tetradecenoylcarnitine)

INCHI for HMDB0013330 (3-Hydroxy-cis-5-tetradecenoylcarnitine)

Structure for HMDB0013330 (3-Hydroxy-cis-5-tetradecenoylcarnitine)

3D Structure for HMDB0013330 (3-Hydroxy-cis-5-tetradecenoylcarnitine)

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra

MS/MS Spectra

NMR Spectra