Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-06 15:00:53 UTC
Update Date2021-09-14 14:59:42 UTC
HMDB IDHMDB0014028
Secondary Accession Numbers
  • HMDB14028
Metabolite Identification
Common Name6-Hydroxygliclazide
Description6-Hydroxygliclazide is only found in individuals that have used or taken Gliclazide. 6-Hydroxygliclazide is a metabolite of Gliclazide. 6-hydroxygliclazide belongs to the family of Benzenesulfonamides. These are organic compounds containing a sulfonamide group that is S-linked to a benzene ring.
Structure
Data?1582753162
Synonyms
ValueSource
N'-{4-hydroxy-octahydrocyclopenta[c]pyrrol-2-yl}-N-(4-methylbenzenesulfonyl)carbamimidateHMDB
N'-{4-hydroxy-octahydrocyclopenta[c]pyrrol-2-yl}-N-(4-methylbenzenesulphonyl)carbamimidateHMDB
N'-{4-hydroxy-octahydrocyclopenta[c]pyrrol-2-yl}-N-(4-methylbenzenesulphonyl)carbamimidic acidHMDB
Chemical FormulaC15H21N3O4S
Average Molecular Weight339.41
Monoisotopic Molecular Weight339.125276865
IUPAC Name3-{4-hydroxy-octahydrocyclopenta[c]pyrrol-2-yl}-1-(4-methylbenzenesulfonyl)urea
Traditional Name3-{4-hydroxy-hexahydro-1H-cyclopenta[c]pyrrol-2-yl}-1-(4-methylbenzenesulfonyl)urea
CAS Registry NumberNot Available
SMILES
CC1=CC=C(C=C1)S(=O)(=O)NC(=O)NN1CC2CCC(O)C2C1
InChI Identifier
InChI=1S/C15H21N3O4S/c1-10-2-5-12(6-3-10)23(21,22)17-15(20)16-18-8-11-4-7-14(19)13(11)9-18/h2-3,5-6,11,13-14,19H,4,7-9H2,1H3,(H2,16,17,20)
InChI KeyVUUZEWXIRFGRFE-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as benzenesulfonamides. These are organic compounds containing a sulfonamide group that is S-linked to a benzene ring.
KingdomOrganic compounds
Super ClassBenzenoids
ClassBenzene and substituted derivatives
Sub ClassBenzenesulfonamides
Direct ParentBenzenesulfonamides
Alternative Parents
Substituents
  • Benzenesulfonamide
  • Tosyl compound
  • Benzenesulfonyl group
  • Toluene
  • Sulfonylurea
  • Cyclic alcohol
  • Pyrrolidine
  • Organic sulfonic acid or derivatives
  • Organosulfonic acid or derivatives
  • Sulfonyl
  • Aminosulfonyl compound
  • Secondary alcohol
  • Hydrazone
  • Azacycle
  • Organoheterocyclic compound
  • Organic oxide
  • Organopnictogen compound
  • Organosulfur compound
  • Organooxygen compound
  • Organonitrogen compound
  • Alcohol
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Organic nitrogen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.54 g/LALOGPS
logP0.26ALOGPS
logP0.39ChemAxon
logS-2.8ALOGPS
pKa (Strongest Acidic)4.07ChemAxon
pKa (Strongest Basic)1.03ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area98.74 ŲChemAxon
Rotatable Bond Count2ChemAxon
Refractivity85.45 m³·mol⁻¹ChemAxon
Polarizability35.06 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+179.56731661259
DarkChem[M-H]-178.74331661259
DeepCCS[M+H]+172.36930932474
DeepCCS[M-H]-170.01130932474
DeepCCS[M-2H]-203.60130932474
DeepCCS[M+Na]+178.82930932474
AllCCS[M+H]+179.132859911
AllCCS[M+H-H2O]+176.232859911
AllCCS[M+NH4]+181.932859911
AllCCS[M+Na]+182.632859911
AllCCS[M-H]-175.432859911
AllCCS[M+Na-2H]-175.532859911
AllCCS[M+HCOO]-175.732859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
6-HydroxygliclazideCC1=CC=C(C=C1)S(=O)(=O)NC(=O)NN1CC2CCC(O)C2C14068.3Standard polar33892256
6-HydroxygliclazideCC1=CC=C(C=C1)S(=O)(=O)NC(=O)NN1CC2CCC(O)C2C12109.1Standard non polar33892256
6-HydroxygliclazideCC1=CC=C(C=C1)S(=O)(=O)NC(=O)NN1CC2CCC(O)C2C13014.3Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
6-Hydroxygliclazide,1TMS,isomer #1CC1=CC=C(S(=O)(=O)NC(=O)NN2CC3CCC(O[Si](C)(C)C)C3C2)C=C13057.7Semi standard non polar33892256
6-Hydroxygliclazide,1TMS,isomer #2CC1=CC=C(S(=O)(=O)N(C(=O)NN2CC3CCC(O)C3C2)[Si](C)(C)C)C=C12970.2Semi standard non polar33892256
6-Hydroxygliclazide,1TMS,isomer #3CC1=CC=C(S(=O)(=O)NC(=O)N(N2CC3CCC(O)C3C2)[Si](C)(C)C)C=C12961.4Semi standard non polar33892256
6-Hydroxygliclazide,2TMS,isomer #1CC1=CC=C(S(=O)(=O)N(C(=O)NN2CC3CCC(O[Si](C)(C)C)C3C2)[Si](C)(C)C)C=C12921.6Semi standard non polar33892256
6-Hydroxygliclazide,2TMS,isomer #1CC1=CC=C(S(=O)(=O)N(C(=O)NN2CC3CCC(O[Si](C)(C)C)C3C2)[Si](C)(C)C)C=C12938.9Standard non polar33892256
6-Hydroxygliclazide,2TMS,isomer #1CC1=CC=C(S(=O)(=O)N(C(=O)NN2CC3CCC(O[Si](C)(C)C)C3C2)[Si](C)(C)C)C=C14055.1Standard polar33892256
6-Hydroxygliclazide,2TMS,isomer #2CC1=CC=C(S(=O)(=O)NC(=O)N(N2CC3CCC(O[Si](C)(C)C)C3C2)[Si](C)(C)C)C=C12919.5Semi standard non polar33892256
6-Hydroxygliclazide,2TMS,isomer #2CC1=CC=C(S(=O)(=O)NC(=O)N(N2CC3CCC(O[Si](C)(C)C)C3C2)[Si](C)(C)C)C=C12978.2Standard non polar33892256
6-Hydroxygliclazide,2TMS,isomer #2CC1=CC=C(S(=O)(=O)NC(=O)N(N2CC3CCC(O[Si](C)(C)C)C3C2)[Si](C)(C)C)C=C13969.4Standard polar33892256
6-Hydroxygliclazide,2TMS,isomer #3CC1=CC=C(S(=O)(=O)N(C(=O)N(N2CC3CCC(O)C3C2)[Si](C)(C)C)[Si](C)(C)C)C=C12890.3Semi standard non polar33892256
6-Hydroxygliclazide,2TMS,isomer #3CC1=CC=C(S(=O)(=O)N(C(=O)N(N2CC3CCC(O)C3C2)[Si](C)(C)C)[Si](C)(C)C)C=C13120.9Standard non polar33892256
6-Hydroxygliclazide,2TMS,isomer #3CC1=CC=C(S(=O)(=O)N(C(=O)N(N2CC3CCC(O)C3C2)[Si](C)(C)C)[Si](C)(C)C)C=C14099.1Standard polar33892256
6-Hydroxygliclazide,3TMS,isomer #1CC1=CC=C(S(=O)(=O)N(C(=O)N(N2CC3CCC(O[Si](C)(C)C)C3C2)[Si](C)(C)C)[Si](C)(C)C)C=C12882.2Semi standard non polar33892256
6-Hydroxygliclazide,3TMS,isomer #1CC1=CC=C(S(=O)(=O)N(C(=O)N(N2CC3CCC(O[Si](C)(C)C)C3C2)[Si](C)(C)C)[Si](C)(C)C)C=C13153.5Standard non polar33892256
6-Hydroxygliclazide,3TMS,isomer #1CC1=CC=C(S(=O)(=O)N(C(=O)N(N2CC3CCC(O[Si](C)(C)C)C3C2)[Si](C)(C)C)[Si](C)(C)C)C=C13748.1Standard polar33892256
6-Hydroxygliclazide,1TBDMS,isomer #1CC1=CC=C(S(=O)(=O)NC(=O)NN2CC3CCC(O[Si](C)(C)C(C)(C)C)C3C2)C=C13306.6Semi standard non polar33892256
6-Hydroxygliclazide,1TBDMS,isomer #2CC1=CC=C(S(=O)(=O)N(C(=O)NN2CC3CCC(O)C3C2)[Si](C)(C)C(C)(C)C)C=C13240.5Semi standard non polar33892256
6-Hydroxygliclazide,1TBDMS,isomer #3CC1=CC=C(S(=O)(=O)NC(=O)N(N2CC3CCC(O)C3C2)[Si](C)(C)C(C)(C)C)C=C13236.6Semi standard non polar33892256
6-Hydroxygliclazide,2TBDMS,isomer #1CC1=CC=C(S(=O)(=O)N(C(=O)NN2CC3CCC(O[Si](C)(C)C(C)(C)C)C3C2)[Si](C)(C)C(C)(C)C)C=C13432.2Semi standard non polar33892256
6-Hydroxygliclazide,2TBDMS,isomer #1CC1=CC=C(S(=O)(=O)N(C(=O)NN2CC3CCC(O[Si](C)(C)C(C)(C)C)C3C2)[Si](C)(C)C(C)(C)C)C=C13422.5Standard non polar33892256
6-Hydroxygliclazide,2TBDMS,isomer #1CC1=CC=C(S(=O)(=O)N(C(=O)NN2CC3CCC(O[Si](C)(C)C(C)(C)C)C3C2)[Si](C)(C)C(C)(C)C)C=C14113.2Standard polar33892256
6-Hydroxygliclazide,2TBDMS,isomer #2CC1=CC=C(S(=O)(=O)NC(=O)N(N2CC3CCC(O[Si](C)(C)C(C)(C)C)C3C2)[Si](C)(C)C(C)(C)C)C=C13411.7Semi standard non polar33892256
6-Hydroxygliclazide,2TBDMS,isomer #2CC1=CC=C(S(=O)(=O)NC(=O)N(N2CC3CCC(O[Si](C)(C)C(C)(C)C)C3C2)[Si](C)(C)C(C)(C)C)C=C13487.2Standard non polar33892256
6-Hydroxygliclazide,2TBDMS,isomer #2CC1=CC=C(S(=O)(=O)NC(=O)N(N2CC3CCC(O[Si](C)(C)C(C)(C)C)C3C2)[Si](C)(C)C(C)(C)C)C=C14001.6Standard polar33892256
6-Hydroxygliclazide,2TBDMS,isomer #3CC1=CC=C(S(=O)(=O)N(C(=O)N(N2CC3CCC(O)C3C2)[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)C=C13430.5Semi standard non polar33892256
6-Hydroxygliclazide,2TBDMS,isomer #3CC1=CC=C(S(=O)(=O)N(C(=O)N(N2CC3CCC(O)C3C2)[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)C=C13620.7Standard non polar33892256
6-Hydroxygliclazide,2TBDMS,isomer #3CC1=CC=C(S(=O)(=O)N(C(=O)N(N2CC3CCC(O)C3C2)[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)C=C14099.8Standard polar33892256
6-Hydroxygliclazide,3TBDMS,isomer #1CC1=CC=C(S(=O)(=O)N(C(=O)N(N2CC3CCC(O[Si](C)(C)C(C)(C)C)C3C2)[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)C=C13635.0Semi standard non polar33892256
6-Hydroxygliclazide,3TBDMS,isomer #1CC1=CC=C(S(=O)(=O)N(C(=O)N(N2CC3CCC(O[Si](C)(C)C(C)(C)C)C3C2)[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)C=C13895.9Standard non polar33892256
6-Hydroxygliclazide,3TBDMS,isomer #1CC1=CC=C(S(=O)(=O)N(C(=O)N(N2CC3CCC(O[Si](C)(C)C(C)(C)C)C3C2)[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)C=C13844.7Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 6-Hydroxygliclazide GC-MS (Non-derivatized) - 70eV, Positivesplash10-000t-9324000000-a28ee1fa2e92b97e36432017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 6-Hydroxygliclazide GC-MS (1 TMS) - 70eV, Positivesplash10-00dj-9203000000-93fd2491dccf1982b95c2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 6-Hydroxygliclazide GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 6-Hydroxygliclazide GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 6-Hydroxygliclazide 10V, Positive-QTOFsplash10-00dl-0809000000-04d7156af0eb7b5b843b2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 6-Hydroxygliclazide 20V, Positive-QTOFsplash10-05i3-0900000000-ad20fe5d2aedd553a55f2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 6-Hydroxygliclazide 40V, Positive-QTOFsplash10-05e9-9600000000-594162e6a1fe44a59e172016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 6-Hydroxygliclazide 10V, Negative-QTOFsplash10-0079-0819000000-1338b6e41f7f38fb76b92016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 6-Hydroxygliclazide 20V, Negative-QTOFsplash10-00dm-1900000000-bef805d6dca8751768df2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 6-Hydroxygliclazide 40V, Negative-QTOFsplash10-00bc-9800000000-2267e116ea5a0ab177ab2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 6-Hydroxygliclazide 10V, Negative-QTOFsplash10-000i-0209000000-d04b6cd252bbc7dd071f2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 6-Hydroxygliclazide 20V, Negative-QTOFsplash10-00di-2911000000-cdcf284e6f5edd08f3072021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 6-Hydroxygliclazide 40V, Negative-QTOFsplash10-00di-5910000000-5ff135bfbf298be73a112021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 6-Hydroxygliclazide 10V, Positive-QTOFsplash10-0006-0409000000-51fbe4f7f2c3f0b179342021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 6-Hydroxygliclazide 20V, Positive-QTOFsplash10-0006-6907000000-4c508423c96c60aeaf9d2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 6-Hydroxygliclazide 40V, Positive-QTOFsplash10-00kf-9200000000-9c6b4efd6789b9768ea52021-09-23Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Extracellular
Biospecimen Locations
  • Blood
  • Urine
Tissue Locations
  • Kidney
  • Liver
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodExpected but not QuantifiedNot QuantifiedNot AvailableNot AvailableTaking drug identified by DrugBank entry details
UrineExpected but not QuantifiedNot QuantifiedNot AvailableNot AvailableTaking drug identified by DrugBank entry details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID35032784
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound75051323
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available