Record Information |
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Version | 5.0 |
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Status | Detected but not Quantified |
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Creation Date | 2012-09-11 17:30:17 UTC |
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Update Date | 2023-02-21 17:18:45 UTC |
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HMDB ID | HMDB0029415 |
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Secondary Accession Numbers | |
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Metabolite Identification |
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Common Name | S-Carboxymethyl-L-cysteine |
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Description | S-carboxymethylcysteine (carbocisteine) is the most frequently prescribed mucoactive agent for long-term COPD (chronic obstructive pulmonary disease) use in a number of countries. In addition to its mucoregulatory activity, carbocisteine exhibits free-radical scavenging and anti-inflammatory properties. S-Carboxymethyl-L-cysteine can be found in root vegetables and has been isolated from radish seedlings. S-carboxymethyl-L-cysteine can be detectable in urine especially after the processing of chlorinated compounds by gut microlfora. |
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Structure | InChI=1S/C5H9NO4S/c6-3(5(9)10)1-11-2-4(7)8/h3H,1-2,6H2,(H,7,8)(H,9,10) |
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Synonyms | Value | Source |
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Carbocisteine | Kegg | Mucofan | Kegg | (L)-2-Amino-3-(carboxymethylthio)propionic acid | HMDB | (R)-S-(Carboxymethyl)cysteine | HMDB | 1-Carboxymethylcysteine | HMDB | 2-Amino-3-(carboxymethylthio)propionic acid | HMDB | 2-Amino-3-[(carboxymethyl)sulfanyl]propanoic acid | HMDB | 3-((Carboxymethyl)thio)alanine | HMDB | 3-(Carboxymethylthio)-L-alanine | HMDB | 3-(Carboxymethylthio)alanine | HMDB | 3-[(Carboxymethyl)thio]-L-alanine | HMDB | 3-[(Carboxymethyl)thio]alanine | HMDB | 5-Amino-3-thiadihexanoic acid | HMDB | Carboxymethylated cysteine | HMDB | Carboxymethylcysteine | HMDB | Carboxymethylenecysteine | HMDB | L-3-((Carboxymethyl)thio)alanine | HMDB | L-Carboxymethylcysteine | HMDB | Loviscol | HMDB | Muciclar | HMDB | Mucocis | HMDB | Mucodine | HMDB | Mucodyne | HMDB | Reomucil | HMDB | Rhinathiol | HMDB | S-(Carboxymethyl)-(R)-cysteine | HMDB | S-(Carboxymethyl)-L-cysteine | HMDB | S-(Carboxymethyl)cysteine | HMDB | S-Carboxylmethyl-L-cysteine | HMDB | S-Carboxymethylcysteine | HMDB | Thiodril | HMDB | Carbocysteine, L-isomer | HMDB | S Carboxymethylcysteine | HMDB | Mukodin | HMDB | Carbocysteine, L isomer | HMDB | L-Isomer carbocysteine | HMDB |
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Chemical Formula | C5H9NO4S |
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Average Molecular Weight | 179.194 |
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Monoisotopic Molecular Weight | 179.025228471 |
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IUPAC Name | 2-amino-3-[(carboxymethyl)sulfanyl]propanoic acid |
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Traditional Name | carbocystein |
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CAS Registry Number | 2387-59-9 |
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SMILES | NC(CSCC(O)=O)C(O)=O |
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InChI Identifier | InChI=1S/C5H9NO4S/c6-3(5(9)10)1-11-2-4(7)8/h3H,1-2,6H2,(H,7,8)(H,9,10) |
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InChI Key | GBFLZEXEOZUWRN-UHFFFAOYSA-N |
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Chemical Taxonomy |
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Description | Belongs to the class of organic compounds known as cysteine and derivatives. Cysteine and derivatives are compounds containing cysteine or a derivative thereof resulting from reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. |
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Kingdom | Organic compounds |
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Super Class | Organic acids and derivatives |
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Class | Carboxylic acids and derivatives |
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Sub Class | Amino acids, peptides, and analogues |
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Direct Parent | Cysteine and derivatives |
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Alternative Parents | |
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Substituents | - Cysteine or derivatives
- Alpha-amino acid
- Dicarboxylic acid or derivatives
- Amino acid
- Carboxylic acid
- Thioether
- Sulfenyl compound
- Dialkylthioether
- Amine
- Organic nitrogen compound
- Primary amine
- Organosulfur compound
- Organooxygen compound
- Organonitrogen compound
- Primary aliphatic amine
- Organic oxygen compound
- Organic oxide
- Carbonyl group
- Hydrocarbon derivative
- Organopnictogen compound
- Aliphatic acyclic compound
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Molecular Framework | Aliphatic acyclic compounds |
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External Descriptors | Not Available |
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Ontology |
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Physiological effect | Not Available |
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Disposition | |
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Process | Not Available |
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Role | Not Available |
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Physical Properties |
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State | Solid |
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Experimental Molecular Properties | Property | Value | Reference |
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Melting Point | 204 - 207 °C | Not Available | Boiling Point | Not Available | Not Available | Water Solubility | Not Available | Not Available | LogP | Not Available | Not Available |
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Experimental Chromatographic Properties | Experimental Collision Cross SectionsAdduct Type | Data Source | CCS Value (Å2) | Reference |
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[M+H]+ | Baker | 141.133 | 30932474 | [M+H]+ | MetCCS_train_pos | 137.185 | 30932474 |
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Predicted Molecular Properties | |
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Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Kovats Retention IndicesUnderivatizedDerivatizedDerivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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S-Carboxymethyl-L-cysteine,1TMS,isomer #1 | C[Si](C)(C)OC(=O)CSCC(N)C(=O)O | 1716.3 | Semi standard non polar | 33892256 | S-Carboxymethyl-L-cysteine,1TMS,isomer #2 | C[Si](C)(C)OC(=O)C(N)CSCC(=O)O | 1758.9 | Semi standard non polar | 33892256 | S-Carboxymethyl-L-cysteine,1TMS,isomer #3 | C[Si](C)(C)NC(CSCC(=O)O)C(=O)O | 1793.8 | Semi standard non polar | 33892256 | S-Carboxymethyl-L-cysteine,2TMS,isomer #1 | C[Si](C)(C)OC(=O)CSCC(N)C(=O)O[Si](C)(C)C | 1755.5 | Semi standard non polar | 33892256 | S-Carboxymethyl-L-cysteine,2TMS,isomer #2 | C[Si](C)(C)NC(CSCC(=O)O[Si](C)(C)C)C(=O)O | 1836.2 | Semi standard non polar | 33892256 | S-Carboxymethyl-L-cysteine,2TMS,isomer #3 | C[Si](C)(C)NC(CSCC(=O)O)C(=O)O[Si](C)(C)C | 1828.0 | Semi standard non polar | 33892256 | S-Carboxymethyl-L-cysteine,2TMS,isomer #4 | C[Si](C)(C)N(C(CSCC(=O)O)C(=O)O)[Si](C)(C)C | 1980.5 | Semi standard non polar | 33892256 | S-Carboxymethyl-L-cysteine,3TMS,isomer #1 | C[Si](C)(C)NC(CSCC(=O)O[Si](C)(C)C)C(=O)O[Si](C)(C)C | 1846.8 | Semi standard non polar | 33892256 | S-Carboxymethyl-L-cysteine,3TMS,isomer #1 | C[Si](C)(C)NC(CSCC(=O)O[Si](C)(C)C)C(=O)O[Si](C)(C)C | 1815.1 | Standard non polar | 33892256 | S-Carboxymethyl-L-cysteine,3TMS,isomer #2 | C[Si](C)(C)OC(=O)CSCC(C(=O)O)N([Si](C)(C)C)[Si](C)(C)C | 2003.5 | Semi standard non polar | 33892256 | S-Carboxymethyl-L-cysteine,3TMS,isomer #2 | C[Si](C)(C)OC(=O)CSCC(C(=O)O)N([Si](C)(C)C)[Si](C)(C)C | 1904.0 | Standard non polar | 33892256 | S-Carboxymethyl-L-cysteine,3TMS,isomer #3 | C[Si](C)(C)OC(=O)C(CSCC(=O)O)N([Si](C)(C)C)[Si](C)(C)C | 1980.1 | Semi standard non polar | 33892256 | S-Carboxymethyl-L-cysteine,3TMS,isomer #3 | C[Si](C)(C)OC(=O)C(CSCC(=O)O)N([Si](C)(C)C)[Si](C)(C)C | 1875.5 | Standard non polar | 33892256 | S-Carboxymethyl-L-cysteine,4TMS,isomer #1 | C[Si](C)(C)OC(=O)CSCC(C(=O)O[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C | 2010.5 | Semi standard non polar | 33892256 | S-Carboxymethyl-L-cysteine,4TMS,isomer #1 | C[Si](C)(C)OC(=O)CSCC(C(=O)O[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C | 1937.2 | Standard non polar | 33892256 | S-Carboxymethyl-L-cysteine,1TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC(=O)CSCC(N)C(=O)O | 1977.0 | Semi standard non polar | 33892256 | S-Carboxymethyl-L-cysteine,1TBDMS,isomer #2 | CC(C)(C)[Si](C)(C)OC(=O)C(N)CSCC(=O)O | 2006.5 | Semi standard non polar | 33892256 | S-Carboxymethyl-L-cysteine,1TBDMS,isomer #3 | CC(C)(C)[Si](C)(C)NC(CSCC(=O)O)C(=O)O | 2038.3 | Semi standard non polar | 33892256 | S-Carboxymethyl-L-cysteine,2TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC(=O)CSCC(N)C(=O)O[Si](C)(C)C(C)(C)C | 2206.1 | Semi standard non polar | 33892256 | S-Carboxymethyl-L-cysteine,2TBDMS,isomer #2 | CC(C)(C)[Si](C)(C)NC(CSCC(=O)O[Si](C)(C)C(C)(C)C)C(=O)O | 2299.1 | Semi standard non polar | 33892256 | S-Carboxymethyl-L-cysteine,2TBDMS,isomer #3 | CC(C)(C)[Si](C)(C)NC(CSCC(=O)O)C(=O)O[Si](C)(C)C(C)(C)C | 2290.5 | Semi standard non polar | 33892256 | S-Carboxymethyl-L-cysteine,2TBDMS,isomer #4 | CC(C)(C)[Si](C)(C)N(C(CSCC(=O)O)C(=O)O)[Si](C)(C)C(C)(C)C | 2415.1 | Semi standard non polar | 33892256 | S-Carboxymethyl-L-cysteine,3TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)NC(CSCC(=O)O[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C | 2495.9 | Semi standard non polar | 33892256 | S-Carboxymethyl-L-cysteine,3TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)NC(CSCC(=O)O[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C | 2389.5 | Standard non polar | 33892256 | S-Carboxymethyl-L-cysteine,3TBDMS,isomer #2 | CC(C)(C)[Si](C)(C)OC(=O)CSCC(C(=O)O)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C | 2652.4 | Semi standard non polar | 33892256 | S-Carboxymethyl-L-cysteine,3TBDMS,isomer #2 | CC(C)(C)[Si](C)(C)OC(=O)CSCC(C(=O)O)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C | 2455.4 | Standard non polar | 33892256 | S-Carboxymethyl-L-cysteine,3TBDMS,isomer #3 | CC(C)(C)[Si](C)(C)OC(=O)C(CSCC(=O)O)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C | 2657.8 | Semi standard non polar | 33892256 | S-Carboxymethyl-L-cysteine,3TBDMS,isomer #3 | CC(C)(C)[Si](C)(C)OC(=O)C(CSCC(=O)O)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C | 2438.6 | Standard non polar | 33892256 | S-Carboxymethyl-L-cysteine,4TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC(=O)CSCC(C(=O)O[Si](C)(C)C(C)(C)C)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C | 2873.6 | Semi standard non polar | 33892256 | S-Carboxymethyl-L-cysteine,4TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC(=O)CSCC(C(=O)O[Si](C)(C)C(C)(C)C)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C | 2664.2 | Standard non polar | 33892256 |
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| GC-MS SpectraSpectrum Type | Description | Splash Key | Deposition Date | Source | View |
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Experimental GC-MS | GC-MS Spectrum - S-Carboxymethyl-L-cysteine GC-EI-TOF (Non-derivatized) | splash10-05mk-1920000000-1bfde05bf74ad952988c | 2017-09-12 | HMDB team, MONA, MassBank | View Spectrum | Experimental GC-MS | GC-MS Spectrum - S-Carboxymethyl-L-cysteine GC-EI-TOF (Non-derivatized) | splash10-0gba-0950000000-3deefa0cf048f58da5b7 | 2017-09-12 | HMDB team, MONA, MassBank | View Spectrum | Experimental GC-MS | GC-MS Spectrum - S-Carboxymethyl-L-cysteine GC-EI-TOF (Non-derivatized) | splash10-05mk-1920000000-1bfde05bf74ad952988c | 2018-05-18 | HMDB team, MONA, MassBank | View Spectrum | Experimental GC-MS | GC-MS Spectrum - S-Carboxymethyl-L-cysteine GC-EI-TOF (Non-derivatized) | splash10-0gba-0950000000-3deefa0cf048f58da5b7 | 2018-05-18 | HMDB team, MONA, MassBank | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - S-Carboxymethyl-L-cysteine GC-MS (Non-derivatized) - 70eV, Positive | splash10-0006-9200000000-c20980f00a00f1e6e180 | 2017-09-01 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - S-Carboxymethyl-L-cysteine GC-MS (2 TMS) - 70eV, Positive | splash10-05g4-9650000000-0aed012631a77de5b93a | 2017-10-06 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - S-Carboxymethyl-L-cysteine GC-MS (Non-derivatized) - 70eV, Positive | Not Available | 2021-10-12 | Wishart Lab | View Spectrum |
MS/MS SpectraSpectrum Type | Description | Splash Key | Deposition Date | Source | View |
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Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - S-Carboxymethyl-L-cysteine 10V, Positive-QTOF | splash10-001i-3900000000-33a818ac062af18410a9 | 2016-08-03 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - S-Carboxymethyl-L-cysteine 20V, Positive-QTOF | splash10-000x-9500000000-c7b2a3062072d67fbc4b | 2016-08-03 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - S-Carboxymethyl-L-cysteine 40V, Positive-QTOF | splash10-00du-9100000000-0e0a6581889fafc8e6d2 | 2016-08-03 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - S-Carboxymethyl-L-cysteine 10V, Negative-QTOF | splash10-004l-6900000000-ee309c95fd84852db457 | 2016-08-03 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - S-Carboxymethyl-L-cysteine 20V, Negative-QTOF | splash10-0006-9200000000-396c0c726a8b135b8da4 | 2016-08-03 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - S-Carboxymethyl-L-cysteine 40V, Negative-QTOF | splash10-000f-9000000000-5243edfeeee8b8e7df3e | 2016-08-03 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - S-Carboxymethyl-L-cysteine 10V, Negative-QTOF | splash10-0006-9000000000-2205efc680b90ef8e86d | 2021-09-24 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - S-Carboxymethyl-L-cysteine 20V, Negative-QTOF | splash10-0005-9000000000-c2902dceba4c5c456423 | 2021-09-24 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - S-Carboxymethyl-L-cysteine 40V, Negative-QTOF | splash10-0005-9000000000-95016c8505c678c2d2ef | 2021-09-24 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - S-Carboxymethyl-L-cysteine 10V, Positive-QTOF | splash10-00kf-8900000000-5572c3ac9193ded60872 | 2021-09-24 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - S-Carboxymethyl-L-cysteine 20V, Positive-QTOF | splash10-0079-9100000000-f93524089b1962d1a05c | 2021-09-24 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - S-Carboxymethyl-L-cysteine 40V, Positive-QTOF | splash10-00dl-9000000000-3faa3225eb4898645240 | 2021-09-24 | Wishart Lab | View Spectrum |
NMR SpectraSpectrum Type | Description | Deposition Date | Source | View |
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Predicted 1D NMR | 13C NMR Spectrum (1D, 100 MHz, D2O, predicted) | 2021-09-30 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 100 MHz, D2O, predicted) | 2021-09-30 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 1000 MHz, D2O, predicted) | 2021-09-30 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 1000 MHz, D2O, predicted) | 2021-09-30 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 200 MHz, D2O, predicted) | 2021-09-30 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 200 MHz, D2O, predicted) | 2021-09-30 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 300 MHz, D2O, predicted) | 2021-09-30 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 300 MHz, D2O, predicted) | 2021-09-30 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 400 MHz, D2O, predicted) | 2021-09-30 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 400 MHz, D2O, predicted) | 2021-09-30 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 500 MHz, D2O, predicted) | 2021-09-30 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 500 MHz, D2O, predicted) | 2021-09-30 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 600 MHz, D2O, predicted) | 2021-09-30 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 600 MHz, D2O, predicted) | 2021-09-30 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 700 MHz, D2O, predicted) | 2021-09-30 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 700 MHz, D2O, predicted) | 2021-09-30 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 800 MHz, D2O, predicted) | 2021-09-30 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 800 MHz, D2O, predicted) | 2021-09-30 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 900 MHz, D2O, predicted) | 2021-09-30 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 900 MHz, D2O, predicted) | 2021-09-30 | Wishart Lab | View Spectrum |
IR SpectraSpectrum Type | Description | Deposition Date | Source | View |
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Predicted IR Spectrum | IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M-H]-) | 2023-02-03 | FELIX lab | View Spectrum | Predicted IR Spectrum | IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+) | 2023-02-03 | FELIX lab | View Spectrum | Predicted IR Spectrum | IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+) | 2023-02-03 | FELIX lab | View Spectrum |
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