Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:30:41 UTC
Update Date2022-03-07 02:52:10 UTC
HMDB IDHMDB0029485
Secondary Accession Numbers
  • HMDB29485
Metabolite Identification
Common Name(+)-Isoxanthochymol
Description(+)-Isoxanthochymol belongs to the class of organic compounds known as aromatic monoterpenoids. These are monoterpenoids containing at least one aromatic ring (+)-Isoxanthochymol is an extremely weak basic (essentially neutral) compound (based on its pKa).
Structure
Data?1582753425
Synonyms
ValueSource
IsoxanthochymolHMDB
Chemical FormulaC38H50O6
Average Molecular Weight602.8
Monoisotopic Molecular Weight602.360739332
IUPAC Name7-(3,4-dihydroxybenzoyl)-4,4,10,10-tetramethyl-3,9,11-tris(3-methylbut-2-en-1-yl)-5-oxatricyclo[7.3.1.0¹,⁶]tridec-6-ene-8,13-dione
Traditional Name7-(3,4-dihydroxybenzoyl)-4,4,10,10-tetramethyl-3,9,11-tris(3-methylbut-2-en-1-yl)-5-oxatricyclo[7.3.1.0¹,⁶]tridec-6-ene-8,13-dione
CAS Registry Number52617-33-1
SMILES
CC(C)=CCC1CC23CC(CC=C(C)C)C(C)(C)C(CC=C(C)C)(C(=O)C(C(=O)C4=CC(O)=C(O)C=C4)=C2OC1(C)C)C3=O
InChI Identifier
InChI=1S/C38H50O6/c1-22(2)11-14-26-20-37-21-27(15-12-23(3)4)36(9,10)44-33(37)30(31(41)25-13-16-28(39)29(40)19-25)32(42)38(34(37)43,35(26,7)8)18-17-24(5)6/h11-13,16-17,19,26-27,39-40H,14-15,18,20-21H2,1-10H3
InChI KeyKXTNVBQRLRYVCO-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as aromatic monoterpenoids. These are monoterpenoids containing at least one aromatic ring.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassMonoterpenoids
Direct ParentAromatic monoterpenoids
Alternative Parents
Substituents
  • Aromatic monoterpenoid
  • Benzoyl
  • Catechol
  • Aryl ketone
  • 1-hydroxy-4-unsubstituted benzenoid
  • 1-hydroxy-2-unsubstituted benzenoid
  • Cyclohexenone
  • Phenol
  • Monocyclic benzene moiety
  • Oxane
  • Benzenoid
  • Vinylogous ester
  • Ketone
  • Oxacycle
  • Organoheterocyclic compound
  • Organic oxygen compound
  • Organooxygen compound
  • Hydrocarbon derivative
  • Carbonyl group
  • Organic oxide
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point242 - 244 °CNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.00067 g/LALOGPS
logP6.55ALOGPS
logP8.73ChemAxon
logS-6ALOGPS
pKa (Strongest Acidic)7.47ChemAxon
pKa (Strongest Basic)-4.9ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area100.9 ŲChemAxon
Rotatable Bond Count8ChemAxon
Refractivity179.06 m³·mol⁻¹ChemAxon
Polarizability68.64 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+243.04131661259
DarkChem[M-H]-233.5531661259
DeepCCS[M-2H]-280.84930932474
DeepCCS[M+Na]+255.07130932474
AllCCS[M+H]+243.132859911
AllCCS[M+H-H2O]+241.932859911
AllCCS[M+NH4]+244.332859911
AllCCS[M+Na]+244.632859911
AllCCS[M-H]-252.832859911
AllCCS[M+Na-2H]-255.732859911
AllCCS[M+HCOO]-259.032859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
(+)-IsoxanthochymolCC(C)=CCC1CC23CC(CC=C(C)C)C(C)(C)C(CC=C(C)C)(C(=O)C(C(=O)C4=CC(O)=C(O)C=C4)=C2OC1(C)C)C3=O5267.5Standard polar33892256
(+)-IsoxanthochymolCC(C)=CCC1CC23CC(CC=C(C)C)C(C)(C)C(CC=C(C)C)(C(=O)C(C(=O)C4=CC(O)=C(O)C=C4)=C2OC1(C)C)C3=O3963.8Standard non polar33892256
(+)-IsoxanthochymolCC(C)=CCC1CC23CC(CC=C(C)C)C(C)(C)C(CC=C(C)C)(C(=O)C(C(=O)C4=CC(O)=C(O)C=C4)=C2OC1(C)C)C3=O4301.3Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
(+)-Isoxanthochymol,1TMS,isomer #1CC(C)=CCC1CC23CC(CC=C(C)C)C(C)(C)C(CC=C(C)C)(C(=O)C(C(=O)C4=CC=C(O)C(O[Si](C)(C)C)=C4)=C2OC1(C)C)C3=O4419.2Semi standard non polar33892256
(+)-Isoxanthochymol,1TMS,isomer #2CC(C)=CCC1CC23CC(CC=C(C)C)C(C)(C)C(CC=C(C)C)(C(=O)C(C(=O)C4=CC=C(O[Si](C)(C)C)C(O)=C4)=C2OC1(C)C)C3=O4411.4Semi standard non polar33892256
(+)-Isoxanthochymol,2TMS,isomer #1CC(C)=CCC1CC23CC(CC=C(C)C)C(C)(C)C(CC=C(C)C)(C(=O)C(C(=O)C4=CC=C(O[Si](C)(C)C)C(O[Si](C)(C)C)=C4)=C2OC1(C)C)C3=O4399.3Semi standard non polar33892256
(+)-Isoxanthochymol,1TBDMS,isomer #1CC(C)=CCC1CC23CC(CC=C(C)C)C(C)(C)C(CC=C(C)C)(C(=O)C(C(=O)C4=CC=C(O)C(O[Si](C)(C)C(C)(C)C)=C4)=C2OC1(C)C)C3=O4632.0Semi standard non polar33892256
(+)-Isoxanthochymol,1TBDMS,isomer #2CC(C)=CCC1CC23CC(CC=C(C)C)C(C)(C)C(CC=C(C)C)(C(=O)C(C(=O)C4=CC=C(O[Si](C)(C)C(C)(C)C)C(O)=C4)=C2OC1(C)C)C3=O4629.5Semi standard non polar33892256
(+)-Isoxanthochymol,2TBDMS,isomer #1CC(C)=CCC1CC23CC(CC=C(C)C)C(C)(C)C(CC=C(C)C)(C(=O)C(C(=O)C4=CC=C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)=C4)=C2OC1(C)C)C3=O4761.1Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - (+)-Isoxanthochymol GC-MS (Non-derivatized) - 70eV, Positivesplash10-000i-3400090000-041c944441e80dba10d42017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (+)-Isoxanthochymol GC-MS (1 TMS) - 70eV, Positivesplash10-0a4i-3100009000-eb51e85b5cdba6fe9d8a2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (+)-Isoxanthochymol GC-MS (TMS_1_2) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (+)-Isoxanthochymol GC-MS (TMS_2_1) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (+)-Isoxanthochymol GC-MS (TBDMS_1_1) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (+)-Isoxanthochymol GC-MS (TBDMS_1_2) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (+)-Isoxanthochymol GC-MS (TBDMS_2_1) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (+)-Isoxanthochymol GC-MS ("(+)-Isoxanthochymol,1TMS,#1" TMS) - 70eV, PositiveNot Available2021-10-20Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (+)-Isoxanthochymol 10V, Positive-QTOFsplash10-0w2i-0100293000-ff15e48e801b0b741d1f2015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (+)-Isoxanthochymol 20V, Positive-QTOFsplash10-001a-3200390000-c8bc9317f944186de9102015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (+)-Isoxanthochymol 40V, Positive-QTOFsplash10-00lr-9100220000-4f1639a2f33086f134512015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (+)-Isoxanthochymol 10V, Positive-QTOFsplash10-0w2i-0100293000-ff15e48e801b0b741d1f2015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (+)-Isoxanthochymol 20V, Positive-QTOFsplash10-001a-3200390000-c8bc9317f944186de9102015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (+)-Isoxanthochymol 40V, Positive-QTOFsplash10-00lr-9100220000-4f1639a2f33086f134512015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (+)-Isoxanthochymol 10V, Negative-QTOFsplash10-0udi-0000229000-1303791131d2163144f62015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (+)-Isoxanthochymol 20V, Negative-QTOFsplash10-014r-0502932000-7c4128f22e4969b1014c2015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (+)-Isoxanthochymol 40V, Negative-QTOFsplash10-0ir9-1905440000-97c32fdcd0e9d7de51272015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (+)-Isoxanthochymol 10V, Negative-QTOFsplash10-0udi-0000229000-1303791131d2163144f62015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (+)-Isoxanthochymol 20V, Negative-QTOFsplash10-014r-0502932000-7c4128f22e4969b1014c2015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (+)-Isoxanthochymol 40V, Negative-QTOFsplash10-0ir9-1905440000-97c32fdcd0e9d7de51272015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (+)-Isoxanthochymol 10V, Negative-QTOFsplash10-0udi-0000009000-15c9a51e4345ebcb26952021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (+)-Isoxanthochymol 20V, Negative-QTOFsplash10-0udi-0000039000-4f067a191aae7bf814b12021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (+)-Isoxanthochymol 40V, Negative-QTOFsplash10-00ds-4501290000-0ecbb5cb41417867eecf2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (+)-Isoxanthochymol 10V, Positive-QTOFsplash10-0udi-0000259000-82216cbed33cf1cf2f372021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (+)-Isoxanthochymol 20V, Positive-QTOFsplash10-03di-3100290000-940150a93f95daf3fff62021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (+)-Isoxanthochymol 40V, Positive-QTOFsplash10-000g-9000130000-941c4645cf5cb22b52c12021-09-24Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB000617
KNApSAcK IDC00031902
Chemspider ID26503906
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound14282765
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.