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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:31:03 UTC
Update Date2022-03-07 02:52:12 UTC
HMDB IDHMDB0029542
Secondary Accession Numbers
  • HMDB29542
Metabolite Identification
Common NameClusin
DescriptionClusin belongs to the class of organic compounds known as dibenzylbutyrolactols. These are lignan compounds containing a 3,4-dibenzyloxolan-2-ol moiety. Based on a literature review very few articles have been published on Clusin.
Structure
Data?1582753433
Synonyms
ValueSource
4-(1,3-Benzodioxol-5-ylmethyl)tetrahydro-3-[(3,4,5-trimethoxyphenyl)methyl]-2-furanol, 9ciHMDB
9-Hydroxy-3,4,5-trimethoxy-3',4'-methylenedioxy-9,9'-epoxylignanHMDB
Chemical FormulaC22H26O7
Average Molecular Weight402.4376
Monoisotopic Molecular Weight402.167853186
IUPAC Name4-(2H-1,3-benzodioxol-5-ylmethyl)-3-[(3,4,5-trimethoxyphenyl)methyl]oxolan-2-ol
Traditional Name4-(2H-1,3-benzodioxol-5-ylmethyl)-3-[(3,4,5-trimethoxyphenyl)methyl]oxolan-2-ol
CAS Registry Number86992-94-1
SMILES
COC1=CC(CC2C(CC3=CC4=C(OCO4)C=C3)COC2O)=CC(OC)=C1OC
InChI Identifier
InChI=1S/C22H26O7/c1-24-19-9-14(10-20(25-2)21(19)26-3)7-16-15(11-27-22(16)23)6-13-4-5-17-18(8-13)29-12-28-17/h4-5,8-10,15-16,22-23H,6-7,11-12H2,1-3H3
InChI KeySOCNBZCAGNYAED-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as dibenzylbutyrolactols. These are lignan compounds containing a 3,4-dibenzyloxolan-2-ol moiety.
KingdomOrganic compounds
Super ClassLignans, neolignans and related compounds
ClassFuranoid lignans
Sub ClassTetrahydrofuran lignans
Direct ParentDibenzylbutyrolactols
Alternative Parents
Substituents
  • Dibenzylbutyrolactol
  • Benzodioxole
  • Phenoxy compound
  • Anisole
  • Methoxybenzene
  • Phenol ether
  • Alkyl aryl ether
  • Monocyclic benzene moiety
  • Benzenoid
  • Tetrahydrofuran
  • Hemiacetal
  • Acetal
  • Oxacycle
  • Organoheterocyclic compound
  • Ether
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Organooxygen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water Solubility15.79 mg/L @ 25 °C (est)The Good Scents Company Information System
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.011 g/LALOGPS
logP2.41ALOGPS
logP3.09ChemAxon
logS-4.6ALOGPS
pKa (Strongest Acidic)12.17ChemAxon
pKa (Strongest Basic)-4ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count7ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area75.61 ŲChemAxon
Rotatable Bond Count7ChemAxon
Refractivity105.13 m³·mol⁻¹ChemAxon
Polarizability41.79 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+195.51931661259
DarkChem[M-H]-194.32331661259
DeepCCS[M+H]+188.73630932474
DeepCCS[M-H]-186.37830932474
DeepCCS[M-2H]-220.64730932474
DeepCCS[M+Na]+195.94530932474
AllCCS[M+H]+197.332859911
AllCCS[M+H-H2O]+194.432859911
AllCCS[M+NH4]+199.932859911
AllCCS[M+Na]+200.632859911
AllCCS[M-H]-200.532859911
AllCCS[M+Na-2H]-200.932859911
AllCCS[M+HCOO]-201.532859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
ClusinCOC1=CC(CC2C(CC3=CC4=C(OCO4)C=C3)COC2O)=CC(OC)=C1OC4223.5Standard polar33892256
ClusinCOC1=CC(CC2C(CC3=CC4=C(OCO4)C=C3)COC2O)=CC(OC)=C1OC3100.5Standard non polar33892256
ClusinCOC1=CC(CC2C(CC3=CC4=C(OCO4)C=C3)COC2O)=CC(OC)=C1OC3187.3Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Clusin,1TMS,isomer #1COC1=CC(CC2C(CC3=CC=C4OCOC4=C3)COC2O[Si](C)(C)C)=CC(OC)=C1OC3148.4Semi standard non polar33892256
Clusin,1TBDMS,isomer #1COC1=CC(CC2C(CC3=CC=C4OCOC4=C3)COC2O[Si](C)(C)C(C)(C)C)=CC(OC)=C1OC3387.7Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Clusin GC-MS (Non-derivatized) - 70eV, Positivesplash10-00du-0926000000-226ab4743436103472462017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Clusin GC-MS (1 TMS) - 70eV, Positivesplash10-007c-5913300000-8fe4f02d29bd7432c22a2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Clusin GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Clusin 10V, Positive-QTOFsplash10-0udi-0317900000-abcd97d6f0ccdecff57e2016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Clusin 20V, Positive-QTOFsplash10-0nmu-0869200000-4580c1265d7aece311692016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Clusin 40V, Positive-QTOFsplash10-01pn-0911000000-44a29c6738f0725595732016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Clusin 10V, Negative-QTOFsplash10-0udi-0002900000-0d9247b9b6161a0cb2842016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Clusin 20V, Negative-QTOFsplash10-0zfr-0109200000-ce502b47fd019e67191a2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Clusin 40V, Negative-QTOFsplash10-0ldu-1089000000-ee3d763db77d8d76e88d2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Clusin 10V, Positive-QTOFsplash10-0f79-0009400000-16f559d80f3ae6687e362021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Clusin 20V, Positive-QTOFsplash10-0f80-0925200000-a80f9318eab8b69147d12021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Clusin 40V, Positive-QTOFsplash10-000l-2917000000-a492b14929b88bafd4b42021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Clusin 10V, Negative-QTOFsplash10-0udi-0001900000-b986f9e3a1a871227bc92021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Clusin 20V, Negative-QTOFsplash10-0udr-0009300000-b8fdcd77f3676ebd58442021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Clusin 40V, Negative-QTOFsplash10-059e-1589000000-22e3b341d15e8a2516fa2021-09-24Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB000685
KNApSAcK IDC00041984
Chemspider ID24696624
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound44575537
PDB IDNot Available
ChEBI ID582747
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1810341
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .