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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:31:46 UTC
Update Date2023-02-21 17:18:56 UTC
HMDB IDHMDB0029645
Secondary Accession Numbers
  • HMDB29645
Metabolite Identification
Common NameXanthoxylin
DescriptionXanthoxylin, also known as brevifolin, belongs to the class of organic compounds known as alkyl-phenylketones. These are aromatic compounds containing a ketone substituted by one alkyl group, and a phenyl group. Xanthoxylin is a borneol and camphor tasting compound. Xanthoxylin has been detected, but not quantified in, several different foods, such as fats and oils, german camomiles (Matricaria recutita), herbs and spices, pomegranates (Punica granatum), and sweet oranges (Citrus sinensis). This could make xanthoxylin a potential biomarker for the consumption of these foods. Based on a literature review very few articles have been published on Xanthoxylin.
Structure
Data?1676999936
Synonyms
ValueSource
2-Hydroxy-4,6-dimethoxyacetophenoneMeSH
BrevifolinMeSH
XanthoxylineMeSH
1-(2-Hydroxy-4,6-dimethoxyphenyl)-ethanoneHMDB
1-(2-Hydroxy-4,6-dimethoxyphenyl)ethan-1-oneHMDB
1-(2-Hydroxy-4,6-dimethoxyphenyl)ethanoneHMDB
1-Acetyl-2-hydroxy-4,6-dimethoxybenzeneHMDB
2'-Hydroxy-4',6'-dimethoxy-acetophenoneHMDB
2'-Hydroxy-4',6'-dimethoxyacetophenoneHMDB
2,4-Di-O-methylphloroacetophenoneHMDB
2-Hydroxy-4, 6-dimethoxyacetophenoneHMDB
2-Hydroxyl-4,6-dimethoxy-acetophenoneHMDB
4, 6-Dimethoxy-2-hydroxyacetophenoneHMDB
4,6-Dimethoxy-2-hydroxyacetophenoneHMDB
6-MethoxypaeonolHMDB
Acetophenone der.HMDB
Acetophenone, 2'-hydroxy-4',6'-dimethoxy- (8ci)HMDB
Brevifolin (zanthoxylum)HMDB
Phloracetophenone dimethyl etherHMDB
Phloroacetophenone 2,4-dimethyl etherHMDB
Chemical FormulaC10H12O4
Average Molecular Weight196.1999
Monoisotopic Molecular Weight196.073558872
IUPAC Name1-(2-hydroxy-4,6-dimethoxyphenyl)ethan-1-one
Traditional Namexanthoxylin
CAS Registry Number90-24-4
SMILES
COC1=CC(O)=C(C(C)=O)C(OC)=C1
InChI Identifier
InChI=1S/C10H12O4/c1-6(11)10-8(12)4-7(13-2)5-9(10)14-3/h4-5,12H,1-3H3
InChI KeyFBUBVLUPUDBFME-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as alkyl-phenylketones. These are aromatic compounds containing a ketone substituted by one alkyl group, and a phenyl group.
KingdomOrganic compounds
Super ClassOrganic oxygen compounds
ClassOrganooxygen compounds
Sub ClassCarbonyl compounds
Direct ParentAlkyl-phenylketones
Alternative Parents
Substituents
  • Alkyl-phenylketone
  • Methoxyphenol
  • Dimethoxybenzene
  • M-dimethoxybenzene
  • Acetophenone
  • Phenoxy compound
  • Anisole
  • Benzoyl
  • Phenol ether
  • Aryl alkyl ketone
  • Methoxybenzene
  • Phenol
  • 1-hydroxy-4-unsubstituted benzenoid
  • 1-hydroxy-2-unsubstituted benzenoid
  • Alkyl aryl ether
  • Benzenoid
  • Monocyclic benzene moiety
  • Vinylogous acid
  • Ether
  • Organic oxide
  • Hydrocarbon derivative
  • Aromatic homomonocyclic compound
Molecular FrameworkAromatic homomonocyclic compounds
External Descriptors
Ontology
Physiological effect
Disposition
ProcessNot Available
Role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point85 - 88 °CNot Available
Boiling Point355.06 °C. @ 760.00 mm Hg (est)The Good Scents Company Information System
Water Solubility2627 mg/L @ 25 °C (est)The Good Scents Company Information System
LogP2.933 (est)The Good Scents Company Information System
Experimental Chromatographic Properties

Experimental Collision Cross Sections

Adduct TypeData SourceCCS Value (Å2)Reference
[M+H]+Not Available135.867http://allccs.zhulab.cn/database/detail?ID=AllCCS00001350
Predicted Molecular Properties
PropertyValueSource
Water Solubility2.46 g/LALOGPS
logP1.69ALOGPS
logP1.56ChemAxon
logS-1.9ALOGPS
pKa (Strongest Acidic)10.13ChemAxon
pKa (Strongest Basic)-3.7ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area55.76 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity51.37 m³·mol⁻¹ChemAxon
Polarizability19.71 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+144.14331661259
DarkChem[M-H]-143.66931661259
DeepCCS[M+H]+144.22830932474
DeepCCS[M-H]-141.83330932474
DeepCCS[M-2H]-176.12330932474
DeepCCS[M+Na]+150.76530932474
AllCCS[M+H]+142.732859911
AllCCS[M+H-H2O]+138.532859911
AllCCS[M+NH4]+146.532859911
AllCCS[M+Na]+147.632859911
AllCCS[M-H]-142.732859911
AllCCS[M+Na-2H]-143.432859911
AllCCS[M+HCOO]-144.432859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
XanthoxylinCOC1=CC(O)=C(C(C)=O)C(OC)=C12432.0Standard polar33892256
XanthoxylinCOC1=CC(O)=C(C(C)=O)C(OC)=C11600.1Standard non polar33892256
XanthoxylinCOC1=CC(O)=C(C(C)=O)C(OC)=C11650.2Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Xanthoxylin,1TMS,isomer #1COC1=CC(OC)=C(C(C)=O)C(O[Si](C)(C)C)=C11722.2Semi standard non polar33892256
Xanthoxylin,1TBDMS,isomer #1COC1=CC(OC)=C(C(C)=O)C(O[Si](C)(C)C(C)(C)C)=C11969.3Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Experimental GC-MSGC-MS Spectrum - Xanthoxylin EI-B (Non-derivatized)splash10-001i-2900000000-7f4577d7995fbddd577f2017-09-12HMDB team, MONA, MassBankView Spectrum
Experimental GC-MSGC-MS Spectrum - Xanthoxylin EI-B (Non-derivatized)splash10-001i-0900000000-3cd64b53df7c93b840ad2017-09-12HMDB team, MONA, MassBankView Spectrum
Experimental GC-MSGC-MS Spectrum - Xanthoxylin EI-B (Non-derivatized)splash10-001i-2900000000-7f4577d7995fbddd577f2018-05-18HMDB team, MONA, MassBankView Spectrum
Experimental GC-MSGC-MS Spectrum - Xanthoxylin EI-B (Non-derivatized)splash10-001i-0900000000-3cd64b53df7c93b840ad2018-05-18HMDB team, MONA, MassBankView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Xanthoxylin GC-MS (Non-derivatized) - 70eV, Positivesplash10-001i-2900000000-7f3dc4cd71234f173a0c2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Xanthoxylin GC-MS (1 TMS) - 70eV, Positivesplash10-0uk9-7490000000-7f3ba8e004b9854018cb2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Xanthoxylin GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Experimental LC-MS/MSLC-MS/MS Spectrum - Xanthoxylin LC-ESI-qTof , Positive-QTOFsplash10-0ik9-1497100000-bce3b5395532448137462017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Xanthoxylin , positive-QTOFsplash10-0gba-3900000000-3016175ddc355d5ca94e2017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Xanthoxylin 40V, Negative-QTOFsplash10-01p9-0900000000-43bfa0bde3b4f442ecdc2021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Xanthoxylin 20V, Negative-QTOFsplash10-03di-0900000000-22166f1027bf3e06de042021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Xanthoxylin 10V, Negative-QTOFsplash10-03di-0900000000-568f7cd67cd1fc802fd42021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Xanthoxylin 40V, Positive-QTOFsplash10-0lk9-0900000000-5a2b415f82cac4381e392021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Xanthoxylin 10V, Positive-QTOFsplash10-002b-0900000000-a965b10d2d3aad048c6e2021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Xanthoxylin 20V, Positive-QTOFsplash10-0ufr-0900000000-4f70cdfc7d4f2a990f842021-09-20HMDB team, MONAView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Xanthoxylin 10V, Positive-QTOFsplash10-0002-0900000000-db6a23774c46b4a953532016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Xanthoxylin 20V, Positive-QTOFsplash10-0002-0900000000-ef5b20a480a33ea141b92016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Xanthoxylin 40V, Positive-QTOFsplash10-0002-2900000000-2de8c0fec8d00685e7f72016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Xanthoxylin 10V, Negative-QTOFsplash10-0002-0900000000-41dccc88b05c10fc01992016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Xanthoxylin 20V, Negative-QTOFsplash10-0udj-1900000000-942e591bf3dc0f2bb3512016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Xanthoxylin 40V, Negative-QTOFsplash10-0592-6900000000-a42426d4ccaaf03e24ee2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Xanthoxylin 10V, Positive-QTOFsplash10-0002-0900000000-43e8b5890016d76975372021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Xanthoxylin 20V, Positive-QTOFsplash10-002b-0900000000-58ec00da7265801de99e2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Xanthoxylin 40V, Positive-QTOFsplash10-001u-9500000000-39958fd208cc560c3c1f2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Xanthoxylin 10V, Negative-QTOFsplash10-0002-0900000000-3fa6590d885bd13074802021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Xanthoxylin 20V, Negative-QTOFsplash10-0002-0900000000-7338902de2bb9e7347142021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Xanthoxylin 40V, Negative-QTOFsplash10-06ec-9400000000-59b2e65e6acc03f454ae2021-09-23Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum

IR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M-H]-)2023-02-03FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+)2023-02-03FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+)2023-02-03FELIX labView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB000816
KNApSAcK IDC00002710
Chemspider ID60021
KEGG Compound IDC10726
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound66654
PDB IDNot Available
ChEBI ID562352
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1540351
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .