Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:32:58 UTC
Update Date2022-03-07 02:52:18 UTC
HMDB IDHMDB0029839
Secondary Accession Numbers
  • HMDB29839
Metabolite Identification
Common NameAscorbigen
DescriptionAscorbigen (CAS: 8075-98-7) belongs to the class of organic compounds known as isosorbides. These are organic polycyclic compounds containing an isosorbide (1,4-dianhydrosorbitol) moiety, which consists of two -oxolan-3-ol rings. Ascorbigen is possibly neutral. Ascorbigen is found, on average, in the highest concentration within guava and mung beans. Ascorbigen has also been detected, but not quantified, in bitter gourds and brassicas. Ascorbigen is present in plants, especially cabbage and other cruciferous plants. This could make ascorbigen a potential biomarker for the consumption of these foods.
Structure
Data?1588099450
Synonyms
ValueSource
Ascorbigen aHMDB
AscorbigenHMDB
Chemical FormulaC15H15NO6
Average Molecular Weight305.286
Monoisotopic Molecular Weight305.089937207
IUPAC Name(3S,3aS,6S,6aR)-3,3a,6-trihydroxy-3-[(1H-indol-3-yl)methyl]-hexahydrofuro[3,2-b]furan-2-one
Traditional Name(3S,3aS,6S,6aR)-3,3a,6-trihydroxy-3-(1H-indol-3-ylmethyl)-dihydro-5H-furo[3,2-b]furan-2-one
CAS Registry Number26676-89-1
SMILES
[H][C@]12OC(=O)[C@](O)(CC3=CNC4=CC=CC=C34)[C@@]1(O)OC[C@@H]2O
InChI Identifier
InChI=1S/C15H15NO6/c17-11-7-21-15(20)12(11)22-13(18)14(15,19)5-8-6-16-10-4-2-1-3-9(8)10/h1-4,6,11-12,16-17,19-20H,5,7H2/t11-,12+,14+,15-/m0/s1
InChI KeyOMSJCIOTCFHSIT-MXYBEHONSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as isosorbides. These are organic polycyclic compounds containing an isosorbide(1,4-Dianhydrosorbitol) moiety, which consists of two -oxolan-3-ol rings.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassFurofurans
Sub ClassIsosorbides
Direct ParentIsosorbides
Alternative Parents
Substituents
  • Isosorbide
  • 3-alkylindole
  • Indole
  • Indole or derivatives
  • Gamma butyrolactone
  • Monosaccharide
  • Substituted pyrrole
  • Benzenoid
  • Heteroaromatic compound
  • Tertiary alcohol
  • Pyrrole
  • Oxolane
  • Carboxylic acid ester
  • Hemiacetal
  • Secondary alcohol
  • Lactone
  • Carboxylic acid derivative
  • Oxacycle
  • Azacycle
  • Polyol
  • Monocarboxylic acid or derivatives
  • Organopnictogen compound
  • Organic oxygen compound
  • Organic nitrogen compound
  • Carbonyl group
  • Alcohol
  • Hydrocarbon derivative
  • Organic oxide
  • Organonitrogen compound
  • Organooxygen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Not AvailableNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility7.79 g/LALOGPS
logP0.49ALOGPS
logP0.41ChemAxon
logS-1.6ALOGPS
pKa (Strongest Acidic)9.65ChemAxon
pKa (Strongest Basic)-3.6ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area112.01 ŲChemAxon
Rotatable Bond Count2ChemAxon
Refractivity73.15 m³·mol⁻¹ChemAxon
Polarizability29.12 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M-2H]-200.34130932474
DeepCCS[M+Na]+175.18130932474
AllCCS[M+H]+170.732859911
AllCCS[M+H-H2O]+167.432859911
AllCCS[M+NH4]+173.732859911
AllCCS[M+Na]+174.632859911
AllCCS[M-H]-170.032859911
AllCCS[M+Na-2H]-169.432859911
AllCCS[M+HCOO]-168.932859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Ascorbigen[H][C@]12OC(=O)[C@](O)(CC3=CNC4=CC=CC=C34)[C@@]1(O)OC[C@@H]2O4089.8Standard polar33892256
Ascorbigen[H][C@]12OC(=O)[C@](O)(CC3=CNC4=CC=CC=C34)[C@@]1(O)OC[C@@H]2O2714.8Standard non polar33892256
Ascorbigen[H][C@]12OC(=O)[C@](O)(CC3=CNC4=CC=CC=C34)[C@@]1(O)OC[C@@H]2O2921.3Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Ascorbigen,1TMS,isomer #1C[Si](C)(C)O[C@]1(CC2=C[NH]C3=CC=CC=C23)C(=O)O[C@@H]2[C@@H](O)CO[C@@]21O2873.0Semi standard non polar33892256
Ascorbigen,1TMS,isomer #2C[Si](C)(C)O[C@]12OC[C@H](O)[C@H]1OC(=O)[C@]2(O)CC1=C[NH]C2=CC=CC=C122871.3Semi standard non polar33892256
Ascorbigen,1TMS,isomer #3C[Si](C)(C)O[C@H]1CO[C@@]2(O)[C@@H]1OC(=O)[C@]2(O)CC1=C[NH]C2=CC=CC=C122850.1Semi standard non polar33892256
Ascorbigen,1TMS,isomer #4C[Si](C)(C)N1C=C(C[C@@]2(O)C(=O)O[C@@H]3[C@@H](O)CO[C@@]32O)C2=CC=CC=C212811.4Semi standard non polar33892256
Ascorbigen,2TMS,isomer #1C[Si](C)(C)O[C@H]1CO[C@@]2(O)[C@@H]1OC(=O)[C@@]2(CC1=C[NH]C2=CC=CC=C12)O[Si](C)(C)C2881.8Semi standard non polar33892256
Ascorbigen,2TMS,isomer #2C[Si](C)(C)O[C@]1(CC2=C[NH]C3=CC=CC=C23)C(=O)O[C@@H]2[C@@H](O)CO[C@@]21O[Si](C)(C)C2901.0Semi standard non polar33892256
Ascorbigen,2TMS,isomer #3C[Si](C)(C)O[C@]1(CC2=CN([Si](C)(C)C)C3=CC=CC=C23)C(=O)O[C@@H]2[C@@H](O)CO[C@@]21O2850.5Semi standard non polar33892256
Ascorbigen,2TMS,isomer #4C[Si](C)(C)O[C@H]1CO[C@@]2(O[Si](C)(C)C)[C@@H]1OC(=O)[C@]2(O)CC1=C[NH]C2=CC=CC=C122877.1Semi standard non polar33892256
Ascorbigen,2TMS,isomer #5C[Si](C)(C)O[C@]12OC[C@H](O)[C@H]1OC(=O)[C@]2(O)CC1=CN([Si](C)(C)C)C2=CC=CC=C122852.5Semi standard non polar33892256
Ascorbigen,2TMS,isomer #6C[Si](C)(C)O[C@H]1CO[C@@]2(O)[C@@H]1OC(=O)[C@]2(O)CC1=CN([Si](C)(C)C)C2=CC=CC=C122832.0Semi standard non polar33892256
Ascorbigen,3TMS,isomer #1C[Si](C)(C)O[C@H]1CO[C@@]2(O[Si](C)(C)C)[C@@H]1OC(=O)[C@@]2(CC1=C[NH]C2=CC=CC=C12)O[Si](C)(C)C2914.3Semi standard non polar33892256
Ascorbigen,3TMS,isomer #2C[Si](C)(C)O[C@H]1CO[C@@]2(O)[C@@H]1OC(=O)[C@@]2(CC1=CN([Si](C)(C)C)C2=CC=CC=C12)O[Si](C)(C)C2869.3Semi standard non polar33892256
Ascorbigen,3TMS,isomer #3C[Si](C)(C)O[C@]1(CC2=CN([Si](C)(C)C)C3=CC=CC=C23)C(=O)O[C@@H]2[C@@H](O)CO[C@@]21O[Si](C)(C)C2892.3Semi standard non polar33892256
Ascorbigen,3TMS,isomer #4C[Si](C)(C)O[C@H]1CO[C@@]2(O[Si](C)(C)C)[C@@H]1OC(=O)[C@]2(O)CC1=CN([Si](C)(C)C)C2=CC=CC=C122878.0Semi standard non polar33892256
Ascorbigen,4TMS,isomer #1C[Si](C)(C)O[C@H]1CO[C@@]2(O[Si](C)(C)C)[C@@H]1OC(=O)[C@@]2(CC1=CN([Si](C)(C)C)C2=CC=CC=C12)O[Si](C)(C)C2916.3Semi standard non polar33892256
Ascorbigen,4TMS,isomer #1C[Si](C)(C)O[C@H]1CO[C@@]2(O[Si](C)(C)C)[C@@H]1OC(=O)[C@@]2(CC1=CN([Si](C)(C)C)C2=CC=CC=C12)O[Si](C)(C)C2731.3Standard non polar33892256
Ascorbigen,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)O[C@]1(CC2=C[NH]C3=CC=CC=C23)C(=O)O[C@@H]2[C@@H](O)CO[C@@]21O3140.5Semi standard non polar33892256
Ascorbigen,1TBDMS,isomer #2CC(C)(C)[Si](C)(C)O[C@]12OC[C@H](O)[C@H]1OC(=O)[C@]2(O)CC1=C[NH]C2=CC=CC=C123144.1Semi standard non polar33892256
Ascorbigen,1TBDMS,isomer #3CC(C)(C)[Si](C)(C)O[C@H]1CO[C@@]2(O)[C@@H]1OC(=O)[C@]2(O)CC1=C[NH]C2=CC=CC=C123118.7Semi standard non polar33892256
Ascorbigen,1TBDMS,isomer #4CC(C)(C)[Si](C)(C)N1C=C(C[C@@]2(O)C(=O)O[C@@H]3[C@@H](O)CO[C@@]32O)C2=CC=CC=C213063.4Semi standard non polar33892256
Ascorbigen,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)O[C@H]1CO[C@@]2(O)[C@@H]1OC(=O)[C@@]2(CC1=C[NH]C2=CC=CC=C12)O[Si](C)(C)C(C)(C)C3413.3Semi standard non polar33892256
Ascorbigen,2TBDMS,isomer #2CC(C)(C)[Si](C)(C)O[C@]1(CC2=C[NH]C3=CC=CC=C23)C(=O)O[C@@H]2[C@@H](O)CO[C@@]21O[Si](C)(C)C(C)(C)C3423.7Semi standard non polar33892256
Ascorbigen,2TBDMS,isomer #3CC(C)(C)[Si](C)(C)O[C@]1(CC2=CN([Si](C)(C)C(C)(C)C)C3=CC=CC=C23)C(=O)O[C@@H]2[C@@H](O)CO[C@@]21O3327.2Semi standard non polar33892256
Ascorbigen,2TBDMS,isomer #4CC(C)(C)[Si](C)(C)O[C@H]1CO[C@@]2(O[Si](C)(C)C(C)(C)C)[C@@H]1OC(=O)[C@]2(O)CC1=C[NH]C2=CC=CC=C123425.3Semi standard non polar33892256
Ascorbigen,2TBDMS,isomer #5CC(C)(C)[Si](C)(C)O[C@]12OC[C@H](O)[C@H]1OC(=O)[C@]2(O)CC1=CN([Si](C)(C)C(C)(C)C)C2=CC=CC=C123335.7Semi standard non polar33892256
Ascorbigen,2TBDMS,isomer #6CC(C)(C)[Si](C)(C)O[C@H]1CO[C@@]2(O)[C@@H]1OC(=O)[C@]2(O)CC1=CN([Si](C)(C)C(C)(C)C)C2=CC=CC=C123311.5Semi standard non polar33892256
Ascorbigen,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)O[C@H]1CO[C@@]2(O[Si](C)(C)C(C)(C)C)[C@@H]1OC(=O)[C@@]2(CC1=C[NH]C2=CC=CC=C12)O[Si](C)(C)C(C)(C)C3684.5Semi standard non polar33892256
Ascorbigen,3TBDMS,isomer #2CC(C)(C)[Si](C)(C)O[C@H]1CO[C@@]2(O)[C@@H]1OC(=O)[C@@]2(CC1=CN([Si](C)(C)C(C)(C)C)C2=CC=CC=C12)O[Si](C)(C)C(C)(C)C3573.5Semi standard non polar33892256
Ascorbigen,3TBDMS,isomer #3CC(C)(C)[Si](C)(C)O[C@]1(CC2=CN([Si](C)(C)C(C)(C)C)C3=CC=CC=C23)C(=O)O[C@@H]2[C@@H](O)CO[C@@]21O[Si](C)(C)C(C)(C)C3574.7Semi standard non polar33892256
Ascorbigen,3TBDMS,isomer #4CC(C)(C)[Si](C)(C)O[C@H]1CO[C@@]2(O[Si](C)(C)C(C)(C)C)[C@@H]1OC(=O)[C@]2(O)CC1=CN([Si](C)(C)C(C)(C)C)C2=CC=CC=C123574.6Semi standard non polar33892256
Ascorbigen,4TBDMS,isomer #1CC(C)(C)[Si](C)(C)O[C@H]1CO[C@@]2(O[Si](C)(C)C(C)(C)C)[C@@H]1OC(=O)[C@@]2(CC1=CN([Si](C)(C)C(C)(C)C)C2=CC=CC=C12)O[Si](C)(C)C(C)(C)C3785.5Semi standard non polar33892256
Ascorbigen,4TBDMS,isomer #1CC(C)(C)[Si](C)(C)O[C@H]1CO[C@@]2(O[Si](C)(C)C(C)(C)C)[C@@H]1OC(=O)[C@@]2(CC1=CN([Si](C)(C)C(C)(C)C)C2=CC=CC=C12)O[Si](C)(C)C(C)(C)C3448.3Standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Ascorbigen GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ascorbigen 10V, Negative-QTOFsplash10-0udi-0009000000-778f6a03138b95939a342021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ascorbigen 20V, Negative-QTOFsplash10-0ik9-0793000000-d1dc1b3d34b4c00271432021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ascorbigen 40V, Negative-QTOFsplash10-057i-2900000000-2eb6ef173347b3653a622021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ascorbigen 10V, Positive-QTOFsplash10-0a4i-0039000000-50af81be6112e13c80c92021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ascorbigen 20V, Positive-QTOFsplash10-0a4s-0495000000-a5a60ea20b73d60c0ead2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ascorbigen 40V, Positive-QTOFsplash10-001i-2900000000-bebafc13d8ef9421510d2021-09-24Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-16Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB001054
KNApSAcK IDC00048487
Chemspider ID9407046
KEGG Compound IDNot Available
BioCyc IDCPDQT-426
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound11231998
PDB IDNot Available
ChEBI ID64944
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Katay G, Ott PG, Katay E, Magyar D, Tyihak E: Potential role of formaldehyde in the mechanism of action of ascorbigens on the basis of BioArena studies. Biomed Chromatogr. 2009 Apr;23(4):412-8. doi: 10.1002/bmc.1133. [PubMed:19039806 ]
  2. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .