Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:39:02 UTC
Update Date2022-03-07 02:52:42 UTC
HMDB IDHMDB0030789
Secondary Accession Numbers
  • HMDB30789
Metabolite Identification
Common NameDracunculin
DescriptionDracunculin belongs to the class of organic compounds known as coumarins and derivatives. These are polycyclic aromatic compounds containing a 1-benzopyran moiety with a ketone group at the C2 carbon atom (1-benzopyran-2-one). Dracunculin has been detected, but not quantified in, mugworts (Artemisia vulgaris) and pulses. This could make dracunculin a potential biomarker for the consumption of these foods. Based on a literature review a significant number of articles have been published on Dracunculin.
Structure
Data?1563862038
Synonyms
ValueSource
4-Methoxy-8H-1,3-dioxolo[4,5-H][1]benzopyran-8-oneHMDB
6-Methoxy-7,8-methylenedioxycoumarinHMDB
Chemical FormulaC11H8O5
Average Molecular Weight220.1782
Monoisotopic Molecular Weight220.037173366
IUPAC Name4-methoxy-2H,8H-[1,3]dioxolo[4,5-h]chromen-8-one
Traditional Name4-methoxy-2H-[1,3]dioxolo[4,5-h]chromen-8-one
CAS Registry Number28843-40-5
SMILES
COC1=C2OCOC2=C2OC(=O)C=CC2=C1
InChI Identifier
InChI=1S/C11H8O5/c1-13-7-4-6-2-3-8(12)16-9(6)11-10(7)14-5-15-11/h2-4H,5H2,1H3
InChI KeyGHIKZCCKJTXOGO-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as coumarins and derivatives. These are polycyclic aromatic compounds containing a 1-benzopyran moiety with a ketone group at the C2 carbon atom (1-benzopyran-2-one).
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassCoumarins and derivatives
Sub ClassNot Available
Direct ParentCoumarins and derivatives
Alternative Parents
Substituents
  • Coumarin
  • Benzopyran
  • 1-benzopyran
  • Benzodioxole
  • Anisole
  • Alkyl aryl ether
  • Pyranone
  • Pyran
  • Benzenoid
  • Heteroaromatic compound
  • Lactone
  • Oxacycle
  • Acetal
  • Ether
  • Organoheterocyclic compound
  • Organooxygen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Organic oxygen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point219 - 221 °CNot Available
Boiling PointNot AvailableNot Available
Water Solubility1324 mg/L @ 25 °C (est)The Good Scents Company Information System
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility1.79 g/LALOGPS
logP1.25ALOGPS
logP1.25ChemAxon
logS-2.1ALOGPS
pKa (Strongest Basic)-4.6ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area53.99 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity53.78 m³·mol⁻¹ChemAxon
Polarizability20.68 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+149.73731661259
DarkChem[M-H]-147.93331661259
DeepCCS[M+H]+145.68830932474
DeepCCS[M-H]-143.3330932474
DeepCCS[M-2H]-177.05430932474
DeepCCS[M+Na]+151.95530932474
AllCCS[M+H]+145.732859911
AllCCS[M+H-H2O]+141.432859911
AllCCS[M+NH4]+149.632859911
AllCCS[M+Na]+150.832859911
AllCCS[M-H]-147.532859911
AllCCS[M+Na-2H]-147.032859911
AllCCS[M+HCOO]-146.632859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
DracunculinCOC1=C2OCOC2=C2OC(=O)C=CC2=C13123.4Standard polar33892256
DracunculinCOC1=C2OCOC2=C2OC(=O)C=CC2=C11972.1Standard non polar33892256
DracunculinCOC1=C2OCOC2=C2OC(=O)C=CC2=C12097.0Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Dracunculin GC-MS (Non-derivatized) - 70eV, Positivesplash10-0096-1910000000-00161aaedb372792dce52017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Dracunculin GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Dracunculin GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dracunculin 10V, Positive-QTOFsplash10-00di-0090000000-55d9a95c5081d0ce00f92016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dracunculin 20V, Positive-QTOFsplash10-00di-0090000000-6625b2f29fc154b48ac32016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dracunculin 40V, Positive-QTOFsplash10-004i-0900000000-c6ae997ec219aaf47fc02016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dracunculin 10V, Negative-QTOFsplash10-014i-0290000000-788d89a3a08f97d1bc682016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dracunculin 20V, Negative-QTOFsplash10-014i-0390000000-ff1197d31d83189cfd5b2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dracunculin 40V, Negative-QTOFsplash10-00or-0900000000-5c903aad3b1645d567bf2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dracunculin 10V, Negative-QTOFsplash10-014i-0090000000-14770cf7860b327662b32021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dracunculin 20V, Negative-QTOFsplash10-014i-0390000000-f3baf7e4a4d02bc3c5282021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dracunculin 40V, Negative-QTOFsplash10-01p6-0910000000-ff787864ab1a146fc9352021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dracunculin 10V, Positive-QTOFsplash10-00di-0090000000-3adb0453199e56a12b862021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dracunculin 20V, Positive-QTOFsplash10-00di-0190000000-1953c7a3ddda8f5b11152021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dracunculin 40V, Positive-QTOFsplash10-00bc-0920000000-16ee5fbdbae80e2372662021-09-24Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB002727
KNApSAcK IDC00050744
Chemspider ID4477766
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound5319474
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1822761
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .