Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:44:55 UTC
Update Date2023-02-21 17:21:12 UTC
HMDB IDHMDB0031700
Secondary Accession Numbers
  • HMDB31700
Metabolite Identification
Common Name1-(Malonylamino)cyclopropanecarboxylic acid
Description1-(Malonylamino)cyclopropanecarboxylic acid belongs to the class of organic compounds known as n-acyl-l-alpha-amino acids. These are n-acylated alpha amino acids which have the L-configuration of the alpha-carbon atom. 1-(Malonylamino)cyclopropanecarboxylic acid has been detected, but not quantified in, a few different foods, such as breakfast cereal, cereals and cereal products, and garden tomatoes (Solanum lycopersicum). This could make 1-(malonylamino)cyclopropanecarboxylic acid a potential biomarker for the consumption of these foods. Based on a literature review very few articles have been published on 1-(Malonylamino)cyclopropanecarboxylic acid.
Structure
Data?1677000072
Synonyms
ValueSource
1-(Malonylamino)cyclopropanecarboxylateGenerator
1-((Carboxyacetyl)amino)-cyclopropanecarboxylic acidHMDB
1-(malonylamino)Cyclopropane-1-carboxylic cidHMDB
MACCHMDB
MacpcaHMDB
1-[(2-Carboxy-1-hydroxyethylidene)amino]cyclopropane-1-carboxylateGenerator
Chemical FormulaC7H9NO5
Average Molecular Weight187.1501
Monoisotopic Molecular Weight187.048072403
IUPAC Name1-(2-carboxyacetamido)cyclopropane-1-carboxylic acid
Traditional Name1-(2-carboxyacetamido)cyclopropane-1-carboxylic acid
CAS Registry Number80550-27-2
SMILES
OC(=O)CC(=O)NC1(CC1)C(O)=O
InChI Identifier
InChI=1S/C7H9NO5/c9-4(3-5(10)11)8-7(1-2-7)6(12)13/h1-3H2,(H,8,9)(H,10,11)(H,12,13)
InChI KeyQXOQNNAWFUXKMH-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as n-acyl-l-alpha-amino acids. These are n-acylated alpha amino acids which have the L-configuration of the alpha-carbon atom.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentN-acyl-L-alpha-amino acids
Alternative Parents
Substituents
  • N-acyl-l-alpha-amino acid
  • Cyclopropanecarboxylic acid
  • Cyclopropanecarboxylic acid or derivatives
  • Dicarboxylic acid or derivatives
  • 1,3-dicarbonyl compound
  • Carboxamide group
  • Secondary carboxylic acid amide
  • Carboxylic acid
  • Carbonyl group
  • Organooxygen compound
  • Organonitrogen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Organopnictogen compound
  • Organic oxygen compound
  • Organic nitrogen compound
  • Aliphatic homomonocyclic compound
Molecular FrameworkAliphatic homomonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point158 - 160 °CNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility38.2 g/LALOGPS
logP-0.78ALOGPS
logP-0.74ChemAxon
logS-0.69ALOGPS
pKa (Strongest Acidic)3.12ChemAxon
pKa (Strongest Basic)-5.9ChemAxon
Physiological Charge-2ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area103.7 ŲChemAxon
Rotatable Bond Count4ChemAxon
Refractivity39.04 m³·mol⁻¹ChemAxon
Polarizability16.32 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+140.90631661259
DarkChem[M-H]-135.74931661259
DeepCCS[M+H]+136.45230932474
DeepCCS[M-H]-132.62430932474
DeepCCS[M-2H]-170.25330932474
DeepCCS[M+Na]+145.79130932474
AllCCS[M+H]+140.332859911
AllCCS[M+H-H2O]+136.532859911
AllCCS[M+NH4]+143.832859911
AllCCS[M+Na]+144.832859911
AllCCS[M-H]-136.732859911
AllCCS[M+Na-2H]-137.532859911
AllCCS[M+HCOO]-138.632859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
1-(Malonylamino)cyclopropanecarboxylic acidOC(=O)CC(=O)NC1(CC1)C(O)=O2793.8Standard polar33892256
1-(Malonylamino)cyclopropanecarboxylic acidOC(=O)CC(=O)NC1(CC1)C(O)=O1383.7Standard non polar33892256
1-(Malonylamino)cyclopropanecarboxylic acidOC(=O)CC(=O)NC1(CC1)C(O)=O1793.1Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
1-(Malonylamino)cyclopropanecarboxylic acid,1TMS,isomer #1C[Si](C)(C)OC(=O)CC(=O)NC1(C(=O)O)CC11641.3Semi standard non polar33892256
1-(Malonylamino)cyclopropanecarboxylic acid,1TMS,isomer #2C[Si](C)(C)OC(=O)C1(NC(=O)CC(=O)O)CC11589.6Semi standard non polar33892256
1-(Malonylamino)cyclopropanecarboxylic acid,1TMS,isomer #3C[Si](C)(C)N(C(=O)CC(=O)O)C1(C(=O)O)CC11716.5Semi standard non polar33892256
1-(Malonylamino)cyclopropanecarboxylic acid,2TMS,isomer #1C[Si](C)(C)OC(=O)CC(=O)NC1(C(=O)O[Si](C)(C)C)CC11725.6Semi standard non polar33892256
1-(Malonylamino)cyclopropanecarboxylic acid,2TMS,isomer #2C[Si](C)(C)OC(=O)CC(=O)N(C1(C(=O)O)CC1)[Si](C)(C)C1734.5Semi standard non polar33892256
1-(Malonylamino)cyclopropanecarboxylic acid,2TMS,isomer #3C[Si](C)(C)OC(=O)C1(N(C(=O)CC(=O)O)[Si](C)(C)C)CC11731.8Semi standard non polar33892256
1-(Malonylamino)cyclopropanecarboxylic acid,3TMS,isomer #1C[Si](C)(C)OC(=O)CC(=O)N(C1(C(=O)O[Si](C)(C)C)CC1)[Si](C)(C)C1779.0Semi standard non polar33892256
1-(Malonylamino)cyclopropanecarboxylic acid,3TMS,isomer #1C[Si](C)(C)OC(=O)CC(=O)N(C1(C(=O)O[Si](C)(C)C)CC1)[Si](C)(C)C1835.7Standard non polar33892256
1-(Malonylamino)cyclopropanecarboxylic acid,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)CC(=O)NC1(C(=O)O)CC11904.5Semi standard non polar33892256
1-(Malonylamino)cyclopropanecarboxylic acid,1TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC(=O)C1(NC(=O)CC(=O)O)CC11873.3Semi standard non polar33892256
1-(Malonylamino)cyclopropanecarboxylic acid,1TBDMS,isomer #3CC(C)(C)[Si](C)(C)N(C(=O)CC(=O)O)C1(C(=O)O)CC11958.3Semi standard non polar33892256
1-(Malonylamino)cyclopropanecarboxylic acid,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)CC(=O)NC1(C(=O)O[Si](C)(C)C(C)(C)C)CC12201.9Semi standard non polar33892256
1-(Malonylamino)cyclopropanecarboxylic acid,2TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC(=O)CC(=O)N(C1(C(=O)O)CC1)[Si](C)(C)C(C)(C)C2218.1Semi standard non polar33892256
1-(Malonylamino)cyclopropanecarboxylic acid,2TBDMS,isomer #3CC(C)(C)[Si](C)(C)OC(=O)C1(N(C(=O)CC(=O)O)[Si](C)(C)C(C)(C)C)CC12215.8Semi standard non polar33892256
1-(Malonylamino)cyclopropanecarboxylic acid,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)CC(=O)N(C1(C(=O)O[Si](C)(C)C(C)(C)C)CC1)[Si](C)(C)C(C)(C)C2438.0Semi standard non polar33892256
1-(Malonylamino)cyclopropanecarboxylic acid,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)CC(=O)N(C1(C(=O)O[Si](C)(C)C(C)(C)C)CC1)[Si](C)(C)C(C)(C)C2455.3Standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 1-(Malonylamino)cyclopropanecarboxylic acid GC-MS (Non-derivatized) - 70eV, Positivesplash10-0006-9400000000-3acd3f362a687b96c53b2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 1-(Malonylamino)cyclopropanecarboxylic acid GC-MS (2 TMS) - 70eV, Positivesplash10-07p3-9340000000-171b3697851c55be046b2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 1-(Malonylamino)cyclopropanecarboxylic acid GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-(Malonylamino)cyclopropanecarboxylic acid 10V, Positive-QTOFsplash10-0uki-1900000000-a4d504f3aa074fe1ef4b2016-08-02Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-(Malonylamino)cyclopropanecarboxylic acid 20V, Positive-QTOFsplash10-0udi-9800000000-dfdddb85c0ea39c0c8992016-08-02Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-(Malonylamino)cyclopropanecarboxylic acid 40V, Positive-QTOFsplash10-0udi-9100000000-abfb9445811f895617132016-08-02Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-(Malonylamino)cyclopropanecarboxylic acid 10V, Negative-QTOFsplash10-000l-1900000000-4677195a315c18ca10452016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-(Malonylamino)cyclopropanecarboxylic acid 20V, Negative-QTOFsplash10-0007-6900000000-545f2c85c5757caddca82016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-(Malonylamino)cyclopropanecarboxylic acid 40V, Negative-QTOFsplash10-0zfs-9100000000-2fcdd5ee87d43f4b250f2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-(Malonylamino)cyclopropanecarboxylic acid 10V, Positive-QTOFsplash10-0019-9700000000-3e14bf9dee8c409e82cf2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-(Malonylamino)cyclopropanecarboxylic acid 20V, Positive-QTOFsplash10-052r-9000000000-eaba84a42e7c43b9c56d2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-(Malonylamino)cyclopropanecarboxylic acid 40V, Positive-QTOFsplash10-0006-9000000000-0b43fdecf7ba1edd78642021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-(Malonylamino)cyclopropanecarboxylic acid 10V, Negative-QTOFsplash10-000f-9700000000-fb268ddc041401045d332021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-(Malonylamino)cyclopropanecarboxylic acid 20V, Negative-QTOFsplash10-0006-9200000000-d486b12b5889e25965642021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-(Malonylamino)cyclopropanecarboxylic acid 40V, Negative-QTOFsplash10-0k96-9000000000-86878074e644050054cb2021-09-23Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-30Wishart LabView Spectrum

IR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M-H]-)2023-02-04FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+)2023-02-04FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+)2023-02-04FELIX labView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB008363
KNApSAcK IDNot Available
Chemspider ID117767
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound133503
PDB IDNot Available
ChEBI ID168168
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .