Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:49:41 UTC
Update Date2023-02-21 17:22:07 UTC
HMDB IDHMDB0032416
Secondary Accession Numbers
  • HMDB32416
Metabolite Identification
Common Name2-Methylpiperidine
Description2-Methylpiperidine, also known as alpha -pipecolin or 2-pipecoline, belongs to the class of organic compounds known as piperidines. Piperidines are compounds containing a piperidine ring, which is a saturated aliphatic six-member ring with one nitrogen atom and five carbon atoms. Based on a literature review a significant number of articles have been published on 2-Methylpiperidine.
Structure
Data?1677000127
Synonyms
ValueSource
2-Methyl-piperidineHMDB
(S)-(+)-2-MethylpiperidineHMDB
2-PipecolineHMDB
2-Pipecoline (8ci)HMDB
alpha -MethylpiperidineHMDB
alpha -PipecolinHMDB
alpha -PipecolineHMDB
alpha-MethylpiperidineHMDB
alpha-PipecolinHMDB
alpha-PipecolineHMDB
D-alpha-PipecolineHMDB
Pipecoline, alphaHMDB
PipicolineHMDB
2-Methylpiperidine hydrochlorideHMDB
2-Methylpiperidine, (+-)-isomerHMDB
Chemical FormulaC6H13N
Average Molecular Weight99.1741
Monoisotopic Molecular Weight99.104799421
IUPAC Name2-methylpiperidine
Traditional Name2-methylpiperidine
CAS Registry Number109-05-7
SMILES
CC1CCCCN1
InChI Identifier
InChI=1S/C6H13N/c1-6-4-2-3-5-7-6/h6-7H,2-5H2,1H3
InChI KeyNNWUEBIEOFQMSS-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as piperidines. Piperidines are compounds containing a piperidine ring, which is a saturated aliphatic six-member ring with one nitrogen atom and five carbon atoms.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassPiperidines
Sub ClassNot Available
Direct ParentPiperidines
Alternative Parents
Substituents
  • Piperidine
  • Azacycle
  • Secondary amine
  • Secondary aliphatic amine
  • Organic nitrogen compound
  • Organopnictogen compound
  • Hydrocarbon derivative
  • Organonitrogen compound
  • Amine
  • Aliphatic heteromonocyclic compound
Molecular FrameworkAliphatic heteromonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effect
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling Point117.00 to 119.00 °C. @ 760.00 mm HgThe Good Scents Company Information System
Water Solubility50930 mg/L @ 25 °C (est)The Good Scents Company Information System
LogP1.148 (est)The Good Scents Company Information System
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility64.3 g/LALOGPS
logP1.14ALOGPS
logP1.07ChemAxon
logS-0.19ALOGPS
pKa (Strongest Basic)10.48ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count1ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area12.03 ŲChemAxon
Rotatable Bond Count0ChemAxon
Refractivity31.25 m³·mol⁻¹ChemAxon
Polarizability12.5 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+120.00631661259
DarkChem[M-H]-114.90531661259
DeepCCS[M+H]+127.37530932474
DeepCCS[M-H]-124.94630932474
DeepCCS[M-2H]-161.0630932474
DeepCCS[M+Na]+135.5830932474
AllCCS[M+H]+119.132859911
AllCCS[M+H-H2O]+114.032859911
AllCCS[M+NH4]+123.932859911
AllCCS[M+Na]+125.332859911
AllCCS[M-H]-124.732859911
AllCCS[M+Na-2H]-127.832859911
AllCCS[M+HCOO]-131.332859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
2-MethylpiperidineCC1CCCCN11024.5Standard polar33892256
2-MethylpiperidineCC1CCCCN1792.1Standard non polar33892256
2-MethylpiperidineCC1CCCCN1810.3Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
2-Methylpiperidine,1TMS,isomer #1CC1CCCCN1[Si](C)(C)C1002.3Semi standard non polar33892256
2-Methylpiperidine,1TMS,isomer #1CC1CCCCN1[Si](C)(C)C1084.2Standard non polar33892256
2-Methylpiperidine,1TBDMS,isomer #1CC1CCCCN1[Si](C)(C)C(C)(C)C1239.7Semi standard non polar33892256
2-Methylpiperidine,1TBDMS,isomer #1CC1CCCCN1[Si](C)(C)C(C)(C)C1277.2Standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Experimental GC-MSGC-MS Spectrum - 2-Methylpiperidine EI-B (Non-derivatized)splash10-001i-9000000000-1da129fe173c45ef9d0d2017-09-12HMDB team, MONA, MassBankView Spectrum
Experimental GC-MSGC-MS Spectrum - 2-Methylpiperidine CI-B (Non-derivatized)splash10-000j-9000000000-f6cd5eecf7ee9960906d2017-09-12HMDB team, MONA, MassBankView Spectrum
Experimental GC-MSGC-MS Spectrum - 2-Methylpiperidine EI-B (Non-derivatized)splash10-001i-9000000000-1da129fe173c45ef9d0d2018-05-18HMDB team, MONA, MassBankView Spectrum
Experimental GC-MSGC-MS Spectrum - 2-Methylpiperidine CI-B (Non-derivatized)splash10-000j-9000000000-f6cd5eecf7ee9960906d2018-05-18HMDB team, MONA, MassBankView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 2-Methylpiperidine GC-MS (Non-derivatized) - 70eV, Positivesplash10-05ai-9000000000-ab73507f916f2a1584e82017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 2-Methylpiperidine GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Methylpiperidine 10V, Positive-QTOFsplash10-0udi-1900000000-e1ee3fdd7a45a23509b82015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Methylpiperidine 20V, Positive-QTOFsplash10-0udi-7900000000-677f1e9200c807429b522015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Methylpiperidine 40V, Positive-QTOFsplash10-052f-9000000000-eecc9723fcf484807dd42015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Methylpiperidine 10V, Positive-QTOFsplash10-0udi-1900000000-e1ee3fdd7a45a23509b82015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Methylpiperidine 20V, Positive-QTOFsplash10-0udi-7900000000-677f1e9200c807429b522015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Methylpiperidine 40V, Positive-QTOFsplash10-052f-9000000000-eecc9723fcf484807dd42015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Methylpiperidine 10V, Negative-QTOFsplash10-0002-9000000000-817b5c5353afbab45d3b2015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Methylpiperidine 20V, Negative-QTOFsplash10-0002-9000000000-c76139dd48708e76d8442015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Methylpiperidine 40V, Negative-QTOFsplash10-001i-9000000000-59412ba40f71aaf7bb592015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Methylpiperidine 10V, Negative-QTOFsplash10-0002-9000000000-817b5c5353afbab45d3b2015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Methylpiperidine 20V, Negative-QTOFsplash10-0002-9000000000-c76139dd48708e76d8442015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Methylpiperidine 40V, Negative-QTOFsplash10-001i-9000000000-59412ba40f71aaf7bb592015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Methylpiperidine 10V, Negative-QTOFsplash10-0002-9000000000-9026c27716a0406167922021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Methylpiperidine 20V, Negative-QTOFsplash10-0002-9000000000-9026c27716a0406167922021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Methylpiperidine 40V, Negative-QTOFsplash10-0007-9000000000-11b0dd5daa9f4e77e26b2021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Methylpiperidine 10V, Positive-QTOFsplash10-0udi-3900000000-1f9228b1b6f4fea6d1452021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Methylpiperidine 20V, Positive-QTOFsplash10-0pb9-9300000000-a4adf9235fc10ab1cd8c2021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2-Methylpiperidine 40V, Positive-QTOFsplash10-0a4i-9000000000-fc884a5f7f99cf7df3552021-09-25Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum

IR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M-H]-)2023-02-04FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+)2023-02-04FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+)2023-02-04FELIX labView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB009857
KNApSAcK IDNot Available
Chemspider ID7686
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound7974
PDB IDNot Available
ChEBI ID535978
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1108251
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). EAFUS: Everything Added to Food in the United States.. .