Record Information |
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Version | 5.0 |
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Status | Detected and Quantified |
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Creation Date | 2005-11-16 15:48:42 UTC |
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Update Date | 2023-02-21 17:14:43 UTC |
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HMDB ID | HMDB0000325 |
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Secondary Accession Numbers | |
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Metabolite Identification |
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Common Name | 3-Hydroxysuberic acid |
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Description | 3-Hydroxysuberic acid, also known as 3-hydroxysuberate or 3-hydroxyoctanedioate, belongs to the class of organic compounds known as medium-chain hydroxy acids and derivatives. These are hydroxy acids with a 6 to 12 carbon atoms long side chain. 3-Hydroxysuberic acid exists in all living organisms, ranging from bacteria to humans. 3-Hydroxysuberic acid has been detected, but not quantified in, a few different foods, such as anatidaes (Anatidae), chickens (Gallus gallus), and domestic pigs (Sus scrofa domestica). This could make 3-hydroxysuberic acid a potential biomarker for the consumption of these foods. 3-Hydroxysuberic acid is a secondary metabolite. Secondary metabolites are metabolically or physiologically non-essential metabolites that may serve a role as defense or signalling molecules. In some cases they are simply molecules that arise from the incomplete metabolism of other secondary metabolites. Based on a literature review a significant number of articles have been published on 3-Hydroxysuberic acid. |
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Structure | InChI=1S/C8H14O5/c9-6(5-8(12)13)3-1-2-4-7(10)11/h6,9H,1-5H2,(H,10,11)(H,12,13) |
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Synonyms | Value | Source |
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3-Hydroxysuberate | Generator | 3-Hydroxyoctanedioate | HMDB | 3-Hydroxyoctanedioic acid | HMDB | 3-Hydroxy-suberate | HMDB |
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Chemical Formula | C8H14O5 |
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Average Molecular Weight | 190.1938 |
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Monoisotopic Molecular Weight | 190.084123558 |
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IUPAC Name | 3-hydroxyoctanedioic acid |
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Traditional Name | 3-hydroxysuberic acid |
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CAS Registry Number | 73141-47-6 |
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SMILES | OC(CCCCC(O)=O)CC(O)=O |
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InChI Identifier | InChI=1S/C8H14O5/c9-6(5-8(12)13)3-1-2-4-7(10)11/h6,9H,1-5H2,(H,10,11)(H,12,13) |
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InChI Key | ARJZZFJXSNJKGR-UHFFFAOYSA-N |
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Chemical Taxonomy |
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Description | Belongs to the class of organic compounds known as medium-chain hydroxy acids and derivatives. These are hydroxy acids with a 6 to 12 carbon atoms long side chain. |
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Kingdom | Organic compounds |
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Super Class | Organic acids and derivatives |
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Class | Hydroxy acids and derivatives |
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Sub Class | Medium-chain hydroxy acids and derivatives |
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Direct Parent | Medium-chain hydroxy acids and derivatives |
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Alternative Parents | |
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Substituents | - Medium-chain hydroxy acid
- Medium-chain fatty acid
- Beta-hydroxy acid
- Hydroxy fatty acid
- Dicarboxylic acid or derivatives
- Fatty acyl
- Fatty acid
- Secondary alcohol
- Carboxylic acid
- Carboxylic acid derivative
- Organooxygen compound
- Hydrocarbon derivative
- Organic oxide
- Alcohol
- Carbonyl group
- Organic oxygen compound
- Aliphatic acyclic compound
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Molecular Framework | Aliphatic acyclic compounds |
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External Descriptors | |
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Ontology |
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Physiological effect | Not Available |
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Disposition | |
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Process | Not Available |
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Role | Not Available |
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Physical Properties |
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State | Solid |
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Experimental Molecular Properties | Property | Value | Reference |
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Melting Point | Not Available | Not Available | Boiling Point | Not Available | Not Available | Water Solubility | Not Available | Not Available | LogP | Not Available | Not Available |
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Experimental Chromatographic Properties | Not Available |
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Predicted Molecular Properties | |
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Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Kovats Retention IndicesUnderivatizedDerivatizedDerivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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3-Hydroxysuberic acid,1TMS,isomer #1 | C[Si](C)(C)OC(CCCCC(=O)O)CC(=O)O | 1737.3 | Semi standard non polar | 33892256 | 3-Hydroxysuberic acid,1TMS,isomer #2 | C[Si](C)(C)OC(=O)CCCCC(O)CC(=O)O | 1756.1 | Semi standard non polar | 33892256 | 3-Hydroxysuberic acid,1TMS,isomer #3 | C[Si](C)(C)OC(=O)CC(O)CCCCC(=O)O | 1750.7 | Semi standard non polar | 33892256 | 3-Hydroxysuberic acid,2TMS,isomer #1 | C[Si](C)(C)OC(=O)CCCCC(CC(=O)O)O[Si](C)(C)C | 1822.1 | Semi standard non polar | 33892256 | 3-Hydroxysuberic acid,2TMS,isomer #2 | C[Si](C)(C)OC(=O)CC(CCCCC(=O)O)O[Si](C)(C)C | 1800.3 | Semi standard non polar | 33892256 | 3-Hydroxysuberic acid,2TMS,isomer #3 | C[Si](C)(C)OC(=O)CCCCC(O)CC(=O)O[Si](C)(C)C | 1826.6 | Semi standard non polar | 33892256 | 3-Hydroxysuberic acid,3TMS,isomer #1 | C[Si](C)(C)OC(=O)CCCCC(CC(=O)O[Si](C)(C)C)O[Si](C)(C)C | 1875.8 | Semi standard non polar | 33892256 | 3-Hydroxysuberic acid,1TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC(CCCCC(=O)O)CC(=O)O | 2005.3 | Semi standard non polar | 33892256 | 3-Hydroxysuberic acid,1TBDMS,isomer #2 | CC(C)(C)[Si](C)(C)OC(=O)CCCCC(O)CC(=O)O | 2022.1 | Semi standard non polar | 33892256 | 3-Hydroxysuberic acid,1TBDMS,isomer #3 | CC(C)(C)[Si](C)(C)OC(=O)CC(O)CCCCC(=O)O | 2018.4 | Semi standard non polar | 33892256 | 3-Hydroxysuberic acid,2TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC(=O)CCCCC(CC(=O)O)O[Si](C)(C)C(C)(C)C | 2315.5 | Semi standard non polar | 33892256 | 3-Hydroxysuberic acid,2TBDMS,isomer #2 | CC(C)(C)[Si](C)(C)OC(=O)CC(CCCCC(=O)O)O[Si](C)(C)C(C)(C)C | 2281.5 | Semi standard non polar | 33892256 | 3-Hydroxysuberic acid,2TBDMS,isomer #3 | CC(C)(C)[Si](C)(C)OC(=O)CCCCC(O)CC(=O)O[Si](C)(C)C(C)(C)C | 2281.6 | Semi standard non polar | 33892256 | 3-Hydroxysuberic acid,3TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC(=O)CCCCC(CC(=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C | 2534.1 | Semi standard non polar | 33892256 |
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| GC-MS SpectraSpectrum Type | Description | Splash Key | Deposition Date | Source | View |
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Predicted GC-MS | Predicted GC-MS Spectrum - 3-Hydroxysuberic acid GC-MS (Non-derivatized) - 70eV, Positive | splash10-0006-9600000000-8161524f0f04ddabd28f | 2017-09-01 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - 3-Hydroxysuberic acid GC-MS (3 TMS) - 70eV, Positive | splash10-00a9-9185000000-26b8219023a90b94803c | 2017-10-06 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - 3-Hydroxysuberic acid GC-MS (Non-derivatized) - 70eV, Positive | Not Available | 2021-10-12 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - 3-Hydroxysuberic acid GC-MS (TMS_1_1) - 70eV, Positive | Not Available | 2021-11-05 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - 3-Hydroxysuberic acid GC-MS (TMS_1_2) - 70eV, Positive | Not Available | 2021-11-05 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - 3-Hydroxysuberic acid GC-MS (TMS_1_3) - 70eV, Positive | Not Available | 2021-11-05 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - 3-Hydroxysuberic acid GC-MS (TMS_2_1) - 70eV, Positive | Not Available | 2021-11-05 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - 3-Hydroxysuberic acid GC-MS (TMS_2_2) - 70eV, Positive | Not Available | 2021-11-05 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - 3-Hydroxysuberic acid GC-MS (TMS_2_3) - 70eV, Positive | Not Available | 2021-11-05 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - 3-Hydroxysuberic acid GC-MS (TBDMS_1_1) - 70eV, Positive | Not Available | 2021-11-05 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - 3-Hydroxysuberic acid GC-MS (TBDMS_1_2) - 70eV, Positive | Not Available | 2021-11-05 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - 3-Hydroxysuberic acid GC-MS (TBDMS_1_3) - 70eV, Positive | Not Available | 2021-11-05 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - 3-Hydroxysuberic acid GC-MS (TBDMS_2_1) - 70eV, Positive | Not Available | 2021-11-05 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - 3-Hydroxysuberic acid GC-MS (TBDMS_2_2) - 70eV, Positive | Not Available | 2021-11-05 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - 3-Hydroxysuberic acid GC-MS (TBDMS_2_3) - 70eV, Positive | Not Available | 2021-11-05 | Wishart Lab | View Spectrum | Predicted GC-MS | Predicted GC-MS Spectrum - 3-Hydroxysuberic acid GC-MS (TBDMS_3_1) - 70eV, Positive | Not Available | 2021-11-05 | Wishart Lab | View Spectrum |
MS/MS SpectraSpectrum Type | Description | Splash Key | Deposition Date | Source | View |
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Experimental LC-MS/MS | LC-MS/MS Spectrum - 3-Hydroxysuberic acid Quattro_QQQ 10V, Positive-QTOF (Annotated) | splash10-052r-0900000000-c8110c0a94d4b56b34cb | 2012-07-24 | HMDB team, MONA | View Spectrum | Experimental LC-MS/MS | LC-MS/MS Spectrum - 3-Hydroxysuberic acid Quattro_QQQ 25V, Positive-QTOF (Annotated) | splash10-053r-9300000000-4f9255a9b03fdc58054e | 2012-07-24 | HMDB team, MONA | View Spectrum | Experimental LC-MS/MS | LC-MS/MS Spectrum - 3-Hydroxysuberic acid Quattro_QQQ 40V, Positive-QTOF (Annotated) | splash10-00pi-9000000000-cc672b33ccef862ae95b | 2012-07-24 | HMDB team, MONA | View Spectrum | Experimental LC-MS/MS | LC-MS/MS Spectrum - 3-Hydroxysuberic acid 6V, Positive-QTOF | splash10-004i-1900000000-a0b84d8dc173f05ecfd5 | 2021-09-20 | HMDB team, MONA | View Spectrum | Experimental LC-MS/MS | LC-MS/MS Spectrum - 3-Hydroxysuberic acid 6V, Negative-QTOF | splash10-004i-1900000000-8cf7ff12fa71e34040a6 | 2021-09-20 | HMDB team, MONA | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Hydroxysuberic acid 10V, Positive-QTOF | splash10-05fr-0900000000-61e1c6b1517c58dc0795 | 2017-09-01 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Hydroxysuberic acid 20V, Positive-QTOF | splash10-076r-1900000000-ad988528de191a2d13dc | 2017-09-01 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Hydroxysuberic acid 40V, Positive-QTOF | splash10-0bvu-9300000000-60e11695eca6da026124 | 2017-09-01 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Hydroxysuberic acid 10V, Negative-QTOF | splash10-0079-0900000000-991a42c3d23f65a31306 | 2017-09-01 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Hydroxysuberic acid 20V, Negative-QTOF | splash10-00g1-0900000000-e1fb76486e14d8491dde | 2017-09-01 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Hydroxysuberic acid 40V, Negative-QTOF | splash10-0a6u-9500000000-9846767c99c61860ada3 | 2017-09-01 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Hydroxysuberic acid 10V, Negative-QTOF | splash10-00g0-0900000000-a3fda362228faa530ae1 | 2021-09-25 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Hydroxysuberic acid 20V, Negative-QTOF | splash10-004i-3900000000-c74f29ced60b12eaaa94 | 2021-09-25 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Hydroxysuberic acid 40V, Negative-QTOF | splash10-0a4i-9100000000-14e61d30d5ca51ba50b7 | 2021-09-25 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Hydroxysuberic acid 10V, Positive-QTOF | splash10-001r-5900000000-39bf66242dafebd87829 | 2021-09-25 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Hydroxysuberic acid 20V, Positive-QTOF | splash10-05fr-9200000000-b4ff1b0586d3b7059d94 | 2021-09-25 | Wishart Lab | View Spectrum | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 3-Hydroxysuberic acid 40V, Positive-QTOF | splash10-0a4l-9000000000-6433a1c93128c79da322 | 2021-09-25 | Wishart Lab | View Spectrum |
NMR SpectraSpectrum Type | Description | Deposition Date | Source | View |
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Experimental 1D NMR | 1H NMR Spectrum (1D, 500 MHz, H2O, experimental) | 2012-12-04 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 100 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 100 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 1000 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 1000 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 200 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 200 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 300 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 300 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 400 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 400 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 500 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 500 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 600 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 600 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 700 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 700 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 800 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 800 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | Predicted 1D NMR | 1H NMR Spectrum (1D, 900 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | Predicted 1D NMR | 13C NMR Spectrum (1D, 900 MHz, D2O, predicted) | 2021-09-29 | Wishart Lab | View Spectrum | Experimental 2D NMR | [1H, 13C]-HSQC NMR Spectrum (2D, 600 MHz, H2O, experimental) | 2012-12-05 | Wishart Lab | View Spectrum |
IR SpectraSpectrum Type | Description | Deposition Date | Source | View |
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Predicted IR Spectrum | IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M-H]-) | 2023-02-03 | FELIX lab | View Spectrum | Predicted IR Spectrum | IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+) | 2023-02-03 | FELIX lab | View Spectrum | Predicted IR Spectrum | IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+) | 2023-02-03 | FELIX lab | View Spectrum |
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