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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:51:21 UTC
Update Date2022-03-07 02:53:26 UTC
HMDB IDHMDB0032715
Secondary Accession Numbers
  • HMDB32715
Metabolite Identification
Common NameLepidine B
DescriptionLepidine B belongs to the class of organic compounds known as diphenylethers. These are aromatic compounds containing two benzene rings linked to each other through an ether group. Lepidine B has been detected, but not quantified in, brassicas and garden cresses (Lepidium sativum). This could make lepidine b a potential biomarker for the consumption of these foods. Based on a literature review very few articles have been published on Lepidine B.
Structure
Data?1563862296
SynonymsNot Available
Chemical FormulaC20H18N4O2
Average Molecular Weight346.3825
Monoisotopic Molecular Weight346.14297584
IUPAC Name3-(1H-imidazol-2-ylmethyl)-2-[3-(1H-imidazol-2-ylmethyl)phenoxy]phenol
Traditional Name3-(1H-imidazol-2-ylmethyl)-2-[3-(1H-imidazol-2-ylmethyl)phenoxy]phenol
CAS Registry NumberNot Available
SMILES
OC1=CC=CC(CC2=NC=CN2)=C1OC1=CC=CC(CC2=NC=CN2)=C1
InChI Identifier
InChI=1S/C20H18N4O2/c25-17-6-2-4-15(13-19-23-9-10-24-19)20(17)26-16-5-1-3-14(11-16)12-18-21-7-8-22-18/h1-11,25H,12-13H2,(H,21,22)(H,23,24)
InChI KeyRQNSAUQJLRAUMV-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as diphenylethers. These are aromatic compounds containing two benzene rings linked to each other through an ether group.
KingdomOrganic compounds
Super ClassBenzenoids
ClassBenzene and substituted derivatives
Sub ClassDiphenylethers
Direct ParentDiphenylethers
Alternative Parents
Substituents
  • Diphenylether
  • Diaryl ether
  • Phenoxy compound
  • Phenol ether
  • 1-hydroxy-4-unsubstituted benzenoid
  • 1-hydroxy-2-unsubstituted benzenoid
  • Phenol
  • Azole
  • Imidazole
  • Heteroaromatic compound
  • Ether
  • Azacycle
  • Organoheterocyclic compound
  • Organic nitrogen compound
  • Organooxygen compound
  • Organonitrogen compound
  • Hydrocarbon derivative
  • Organopnictogen compound
  • Organic oxygen compound
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
Role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point212 - 214 °CNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.042 g/LALOGPS
logP3.53ALOGPS
logP2.63ChemAxon
logS-3.9ALOGPS
pKa (Strongest Acidic)8.48ChemAxon
pKa (Strongest Basic)7.3ChemAxon
Physiological Charge2ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area86.82 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity98.51 m³·mol⁻¹ChemAxon
Polarizability36.28 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+182.23831661259
DarkChem[M-H]-181.72131661259
DeepCCS[M+H]+181.55430932474
DeepCCS[M-H]-179.19630932474
DeepCCS[M-2H]-213.01430932474
DeepCCS[M+Na]+188.3130932474
AllCCS[M+H]+184.232859911
AllCCS[M+H-H2O]+181.132859911
AllCCS[M+NH4]+187.032859911
AllCCS[M+Na]+187.832859911
AllCCS[M-H]-184.532859911
AllCCS[M+Na-2H]-183.832859911
AllCCS[M+HCOO]-183.132859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Lepidine BOC1=CC=CC(CC2=NC=CN2)=C1OC1=CC=CC(CC2=NC=CN2)=C14484.4Standard polar33892256
Lepidine BOC1=CC=CC(CC2=NC=CN2)=C1OC1=CC=CC(CC2=NC=CN2)=C13140.7Standard non polar33892256
Lepidine BOC1=CC=CC(CC2=NC=CN2)=C1OC1=CC=CC(CC2=NC=CN2)=C13566.4Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Lepidine B,1TMS,isomer #1C[Si](C)(C)OC1=CC=CC(CC2=NC=C[NH]2)=C1OC1=CC=CC(CC2=NC=C[NH]2)=C13066.9Semi standard non polar33892256
Lepidine B,1TMS,isomer #2C[Si](C)(C)N1C=CN=C1CC1=CC=CC(O)=C1OC1=CC=CC(CC2=NC=C[NH]2)=C13204.3Semi standard non polar33892256
Lepidine B,1TMS,isomer #3C[Si](C)(C)N1C=CN=C1CC1=CC=CC(OC2=C(O)C=CC=C2CC2=NC=C[NH]2)=C13161.8Semi standard non polar33892256
Lepidine B,2TMS,isomer #1C[Si](C)(C)OC1=CC=CC(CC2=NC=CN2[Si](C)(C)C)=C1OC1=CC=CC(CC2=NC=C[NH]2)=C13219.3Semi standard non polar33892256
Lepidine B,2TMS,isomer #1C[Si](C)(C)OC1=CC=CC(CC2=NC=CN2[Si](C)(C)C)=C1OC1=CC=CC(CC2=NC=C[NH]2)=C13213.8Standard non polar33892256
Lepidine B,2TMS,isomer #2C[Si](C)(C)OC1=CC=CC(CC2=NC=C[NH]2)=C1OC1=CC=CC(CC2=NC=CN2[Si](C)(C)C)=C13178.5Semi standard non polar33892256
Lepidine B,2TMS,isomer #2C[Si](C)(C)OC1=CC=CC(CC2=NC=C[NH]2)=C1OC1=CC=CC(CC2=NC=CN2[Si](C)(C)C)=C13217.3Standard non polar33892256
Lepidine B,2TMS,isomer #3C[Si](C)(C)N1C=CN=C1CC1=CC=CC(OC2=C(O)C=CC=C2CC2=NC=CN2[Si](C)(C)C)=C13363.0Semi standard non polar33892256
Lepidine B,2TMS,isomer #3C[Si](C)(C)N1C=CN=C1CC1=CC=CC(OC2=C(O)C=CC=C2CC2=NC=CN2[Si](C)(C)C)=C13289.4Standard non polar33892256
Lepidine B,3TMS,isomer #1C[Si](C)(C)OC1=CC=CC(CC2=NC=CN2[Si](C)(C)C)=C1OC1=CC=CC(CC2=NC=CN2[Si](C)(C)C)=C13360.1Semi standard non polar33892256
Lepidine B,3TMS,isomer #1C[Si](C)(C)OC1=CC=CC(CC2=NC=CN2[Si](C)(C)C)=C1OC1=CC=CC(CC2=NC=CN2[Si](C)(C)C)=C13141.1Standard non polar33892256
Lepidine B,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC1=CC=CC(CC2=NC=C[NH]2)=C1OC1=CC=CC(CC2=NC=C[NH]2)=C13245.0Semi standard non polar33892256
Lepidine B,1TBDMS,isomer #2CC(C)(C)[Si](C)(C)N1C=CN=C1CC1=CC=CC(O)=C1OC1=CC=CC(CC2=NC=C[NH]2)=C13400.5Semi standard non polar33892256
Lepidine B,1TBDMS,isomer #3CC(C)(C)[Si](C)(C)N1C=CN=C1CC1=CC=CC(OC2=C(O)C=CC=C2CC2=NC=C[NH]2)=C13367.8Semi standard non polar33892256
Lepidine B,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC1=CC=CC(CC2=NC=CN2[Si](C)(C)C(C)(C)C)=C1OC1=CC=CC(CC2=NC=C[NH]2)=C13586.5Semi standard non polar33892256
Lepidine B,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC1=CC=CC(CC2=NC=CN2[Si](C)(C)C(C)(C)C)=C1OC1=CC=CC(CC2=NC=C[NH]2)=C13467.3Standard non polar33892256
Lepidine B,2TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC1=CC=CC(CC2=NC=C[NH]2)=C1OC1=CC=CC(CC2=NC=CN2[Si](C)(C)C(C)(C)C)=C13547.4Semi standard non polar33892256
Lepidine B,2TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC1=CC=CC(CC2=NC=C[NH]2)=C1OC1=CC=CC(CC2=NC=CN2[Si](C)(C)C(C)(C)C)=C13469.7Standard non polar33892256
Lepidine B,2TBDMS,isomer #3CC(C)(C)[Si](C)(C)N1C=CN=C1CC1=CC=CC(OC2=C(O)C=CC=C2CC2=NC=CN2[Si](C)(C)C(C)(C)C)=C13766.9Semi standard non polar33892256
Lepidine B,2TBDMS,isomer #3CC(C)(C)[Si](C)(C)N1C=CN=C1CC1=CC=CC(OC2=C(O)C=CC=C2CC2=NC=CN2[Si](C)(C)C(C)(C)C)=C13534.0Standard non polar33892256
Lepidine B,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC1=CC=CC(CC2=NC=CN2[Si](C)(C)C(C)(C)C)=C1OC1=CC=CC(CC2=NC=CN2[Si](C)(C)C(C)(C)C)=C13931.1Semi standard non polar33892256
Lepidine B,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC1=CC=CC(CC2=NC=CN2[Si](C)(C)C(C)(C)C)=C1OC1=CC=CC(CC2=NC=CN2[Si](C)(C)C(C)(C)C)=C13606.2Standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Lepidine B GC-MS (Non-derivatized) - 70eV, Positivesplash10-004i-1894000000-a7cfda4017da63ab97e22017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Lepidine B GC-MS (1 TMS) - 70eV, Positivesplash10-0uka-3329200000-521b78c8cc0042af5bf12017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Lepidine B GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Lepidine B GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Lepidine B 10V, Positive-QTOFsplash10-0002-0109000000-19a2b18924a5acebd6c82016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Lepidine B 20V, Positive-QTOFsplash10-054k-0968000000-50acf8bb6209dc6031ba2016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Lepidine B 40V, Positive-QTOFsplash10-0a6r-2900000000-124e9f0b31aa5d58ae442016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Lepidine B 10V, Negative-QTOFsplash10-0002-0119000000-dfd9a24c3ecb01f160d22016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Lepidine B 20V, Negative-QTOFsplash10-006t-0529000000-3b7189f08123d51139142016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Lepidine B 40V, Negative-QTOFsplash10-001l-2900000000-7b2a58470c267b0105c32016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Lepidine B 10V, Positive-QTOFsplash10-0002-0009000000-0fe39c503da0aa31ad2c2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Lepidine B 20V, Positive-QTOFsplash10-0002-0029000000-69b15b5066cebbd180d62021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Lepidine B 40V, Positive-QTOFsplash10-0a5c-5942000000-efd04258994cabea90a92021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Lepidine B 10V, Negative-QTOFsplash10-0002-0029000000-39354ee4a041b2de9f012021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Lepidine B 20V, Negative-QTOFsplash10-0002-2189000000-636715f082a72dad88532021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Lepidine B 40V, Negative-QTOFsplash10-00mo-6936000000-a0ff4b14468ff5df70d82021-09-24Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB010676
KNApSAcK IDC00028459
Chemspider ID30776948
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound100927764
PDB IDNot Available
ChEBI ID175380
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .