Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:51:28 UTC
Update Date2022-03-07 02:53:27 UTC
HMDB IDHMDB0032734
Secondary Accession Numbers
  • HMDB32734
Metabolite Identification
Common Name9-Hydroxy-3',4'-dimethoxy-3,4-methylenedioxy-9,9'-epoxylignan
Description9-Hydroxy-3',4'-dimethoxy-3,4-methylenedioxy-9,9'-epoxylignan belongs to the class of organic compounds known as dibenzylbutyrolactols. These are lignan compounds containing a 3,4-dibenzyloxolan-2-ol moiety. 9-Hydroxy-3',4'-dimethoxy-3,4-methylenedioxy-9,9'-epoxylignan has been detected, but not quantified in, herbs and spices. This could make 9-hydroxy-3',4'-dimethoxy-3,4-methylenedioxy-9,9'-epoxylignan a potential biomarker for the consumption of these foods. Based on a literature review very few articles have been published on 9-Hydroxy-3',4'-dimethoxy-3,4-methylenedioxy-9,9'-epoxylignan.
Structure
Data?1563862299
Synonyms
ValueSource
3',4'-Dimethoxy-3',4'-desmethylenecubebinHMDB
Chemical FormulaC21H24O6
Average Molecular Weight372.4117
Monoisotopic Molecular Weight372.1572885
IUPAC Name3-(2H-1,3-benzodioxol-5-ylmethyl)-4-[(3,4-dimethoxyphenyl)methyl]oxolan-2-ol
Traditional Name3-(2H-1,3-benzodioxol-5-ylmethyl)-4-[(3,4-dimethoxyphenyl)methyl]oxolan-2-ol
CAS Registry Number67533-86-2
SMILES
COC1=CC=C(CC2COC(O)C2CC2=CC=C3OCOC3=C2)C=C1OC
InChI Identifier
InChI=1S/C21H24O6/c1-23-17-5-3-13(9-19(17)24-2)7-15-11-25-21(22)16(15)8-14-4-6-18-20(10-14)27-12-26-18/h3-6,9-10,15-16,21-22H,7-8,11-12H2,1-2H3
InChI KeyVHLUROMCVXTWNM-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as dibenzylbutyrolactols. These are lignan compounds containing a 3,4-dibenzyloxolan-2-ol moiety.
KingdomOrganic compounds
Super ClassLignans, neolignans and related compounds
ClassFuranoid lignans
Sub ClassTetrahydrofuran lignans
Direct ParentDibenzylbutyrolactols
Alternative Parents
Substituents
  • Dibenzylbutyrolactol
  • Dimethoxybenzene
  • O-dimethoxybenzene
  • Benzodioxole
  • Methoxybenzene
  • Anisole
  • Phenoxy compound
  • Phenol ether
  • Alkyl aryl ether
  • Monocyclic benzene moiety
  • Benzenoid
  • Tetrahydrofuran
  • Hemiacetal
  • Ether
  • Organoheterocyclic compound
  • Acetal
  • Oxacycle
  • Organooxygen compound
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
Role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point66 °CNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.0074 g/LALOGPS
logP2.51ALOGPS
logP3.25ChemAxon
logS-4.7ALOGPS
pKa (Strongest Acidic)12.17ChemAxon
pKa (Strongest Basic)-4ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area66.38 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity98.67 m³·mol⁻¹ChemAxon
Polarizability39.26 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+187.82531661259
DarkChem[M-H]-190.4431661259
DeepCCS[M+H]+182.50430932474
DeepCCS[M-H]-180.14630932474
DeepCCS[M-2H]-214.34830932474
DeepCCS[M+Na]+190.04630932474
AllCCS[M+H]+190.932859911
AllCCS[M+H-H2O]+187.932859911
AllCCS[M+NH4]+193.832859911
AllCCS[M+Na]+194.632859911
AllCCS[M-H]-193.832859911
AllCCS[M+Na-2H]-193.932859911
AllCCS[M+HCOO]-194.232859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
9-Hydroxy-3',4'-dimethoxy-3,4-methylenedioxy-9,9'-epoxylignanCOC1=CC=C(CC2COC(O)C2CC2=CC=C3OCOC3=C2)C=C1OC4010.8Standard polar33892256
9-Hydroxy-3',4'-dimethoxy-3,4-methylenedioxy-9,9'-epoxylignanCOC1=CC=C(CC2COC(O)C2CC2=CC=C3OCOC3=C2)C=C1OC2966.8Standard non polar33892256
9-Hydroxy-3',4'-dimethoxy-3,4-methylenedioxy-9,9'-epoxylignanCOC1=CC=C(CC2COC(O)C2CC2=CC=C3OCOC3=C2)C=C1OC3053.3Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
9-Hydroxy-3',4'-dimethoxy-3,4-methylenedioxy-9,9'-epoxylignan,1TMS,isomer #1COC1=CC=C(CC2COC(O[Si](C)(C)C)C2CC2=CC=C3OCOC3=C2)C=C1OC3004.5Semi standard non polar33892256
9-Hydroxy-3',4'-dimethoxy-3,4-methylenedioxy-9,9'-epoxylignan,1TBDMS,isomer #1COC1=CC=C(CC2COC(O[Si](C)(C)C(C)(C)C)C2CC2=CC=C3OCOC3=C2)C=C1OC3249.0Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 9-Hydroxy-3',4'-dimethoxy-3,4-methylenedioxy-9,9'-epoxylignan GC-MS (Non-derivatized) - 70eV, Positivesplash10-06rl-0916000000-128219085b9aa5348aed2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 9-Hydroxy-3',4'-dimethoxy-3,4-methylenedioxy-9,9'-epoxylignan GC-MS (1 TMS) - 70eV, Positivesplash10-002r-6913300000-02ccbd5aa50f2b3cf7462017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 9-Hydroxy-3',4'-dimethoxy-3,4-methylenedioxy-9,9'-epoxylignan GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-Hydroxy-3',4'-dimethoxy-3,4-methylenedioxy-9,9'-epoxylignan 10V, Positive-QTOFsplash10-00di-0119000000-e7e446d6877fa50ebd0a2016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-Hydroxy-3',4'-dimethoxy-3,4-methylenedioxy-9,9'-epoxylignan 20V, Positive-QTOFsplash10-004i-0749000000-160555fb646dfb15c6ed2016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-Hydroxy-3',4'-dimethoxy-3,4-methylenedioxy-9,9'-epoxylignan 40V, Positive-QTOFsplash10-0uxs-1910000000-fed7c4fca08b78be26d12016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-Hydroxy-3',4'-dimethoxy-3,4-methylenedioxy-9,9'-epoxylignan 10V, Negative-QTOFsplash10-00di-0009000000-aa46271b9db8ecd4754b2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-Hydroxy-3',4'-dimethoxy-3,4-methylenedioxy-9,9'-epoxylignan 20V, Negative-QTOFsplash10-00fr-0109000000-94caf38a15b8cfd0cb122016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-Hydroxy-3',4'-dimethoxy-3,4-methylenedioxy-9,9'-epoxylignan 40V, Negative-QTOFsplash10-0o9a-1297000000-284e832a3608f702da7b2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-Hydroxy-3',4'-dimethoxy-3,4-methylenedioxy-9,9'-epoxylignan 10V, Negative-QTOFsplash10-00di-0009000000-aabb3a4c247b2bbbc2b62021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-Hydroxy-3',4'-dimethoxy-3,4-methylenedioxy-9,9'-epoxylignan 20V, Negative-QTOFsplash10-022c-0009000000-2aca50cc15796c0d85522021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-Hydroxy-3',4'-dimethoxy-3,4-methylenedioxy-9,9'-epoxylignan 40V, Negative-QTOFsplash10-0007-4695000000-277c5a17cd109b7541fc2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-Hydroxy-3',4'-dimethoxy-3,4-methylenedioxy-9,9'-epoxylignan 10V, Positive-QTOFsplash10-05fr-0009000000-81a03e4414444b235e5c2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-Hydroxy-3',4'-dimethoxy-3,4-methylenedioxy-9,9'-epoxylignan 20V, Positive-QTOFsplash10-000i-0907000000-4a6aa2d9b2a8c81f4bfb2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 9-Hydroxy-3',4'-dimethoxy-3,4-methylenedioxy-9,9'-epoxylignan 40V, Positive-QTOFsplash10-002u-4819000000-917ae03204ded77a1f842021-09-24Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB010695
KNApSAcK IDNot Available
Chemspider ID35013478
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound14137606
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .