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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:53:22 UTC
Update Date2022-03-07 02:53:34 UTC
HMDB IDHMDB0033034
Secondary Accession Numbers
  • HMDB33034
Metabolite Identification
Common NameAntibiotic GR 95647X
DescriptionAntibiotic GR 95647X belongs to the class of organic compounds known as acylphloroglucinols and derivatives. These are phloroglucinol derivatives characterized by the presence of a COR group. Based on a literature review very few articles have been published on Antibiotic GR 95647X.
Structure
Data?1563862342
Synonyms
ValueSource
GR 95647XHMDB
Chemical FormulaC26H36O6
Average Molecular Weight444.5604
Monoisotopic Molecular Weight444.251188884
IUPAC Name2,4,6-trihydroxy-5-(1-{5-hydroxy-1,1,3-trimethyl-decahydrocyclopropa[e]inden-3-yl}-3-methylbutyl)benzene-1,3-dicarbaldehyde
Traditional Name2,4,6-trihydroxy-5-(1-{5-hydroxy-1,1,3-trimethyl-octahydrocyclopropa[e]inden-3-yl}-3-methylbutyl)benzene-1,3-dicarbaldehyde
CAS Registry NumberNot Available
SMILES
CC(C)CC(C1=C(O)C(C=O)=C(O)C(C=O)=C1O)C1(C)CC2C3C(CC(O)C2C1)C3(C)C
InChI Identifier
InChI=1S/C26H36O6/c1-12(2)6-17(20-23(31)15(10-27)22(30)16(11-28)24(20)32)26(5)8-13-14(9-26)21-18(7-19(13)29)25(21,3)4/h10-14,17-19,21,29-32H,6-9H2,1-5H3
InChI KeyUYWXWYBEHLAUEW-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as acylphloroglucinols and derivatives. These are phloroglucinol derivatives characterized by the presence of a COR group.
KingdomOrganic compounds
Super ClassBenzenoids
ClassPhenols
Sub ClassBenzenetriols and derivatives
Direct ParentAcylphloroglucinols and derivatives
Alternative Parents
Substituents
  • Acylphloroglucinol derivative
  • Aromatic monoterpenoid
  • Carane monoterpenoid
  • Monoterpenoid
  • Hydroxybenzaldehyde
  • Benzaldehyde
  • Benzoyl
  • Aryl-aldehyde
  • Monocyclic benzene moiety
  • Vinylogous acid
  • Cyclic alcohol
  • Secondary alcohol
  • Polyol
  • Organooxygen compound
  • Hydrocarbon derivative
  • Alcohol
  • Organic oxygen compound
  • Organic oxide
  • Aldehyde
  • Aromatic homopolycyclic compound
Molecular FrameworkAromatic homopolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Process
Role
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.028 g/LALOGPS
logP3.47ALOGPS
logP6.91ChemAxon
logS-4.2ALOGPS
pKa (Strongest Acidic)6.68ChemAxon
pKa (Strongest Basic)-0.9ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area115.06 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity123.94 m³·mol⁻¹ChemAxon
Polarizability48.49 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+201.5131661259
DarkChem[M-H]-197.16631661259
DeepCCS[M+H]+210.51330932474
DeepCCS[M-H]-208.11730932474
DeepCCS[M-2H]-241.030932474
DeepCCS[M+Na]+216.42530932474
AllCCS[M+H]+205.232859911
AllCCS[M+H-H2O]+203.232859911
AllCCS[M+NH4]+207.132859911
AllCCS[M+Na]+207.632859911
AllCCS[M-H]-209.832859911
AllCCS[M+Na-2H]-211.032859911
AllCCS[M+HCOO]-212.532859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Antibiotic GR 95647XCC(C)CC(C1=C(O)C(C=O)=C(O)C(C=O)=C1O)C1(C)CC2C3C(CC(O)C2C1)C3(C)C3683.2Standard polar33892256
Antibiotic GR 95647XCC(C)CC(C1=C(O)C(C=O)=C(O)C(C=O)=C1O)C1(C)CC2C3C(CC(O)C2C1)C3(C)C3029.1Standard non polar33892256
Antibiotic GR 95647XCC(C)CC(C1=C(O)C(C=O)=C(O)C(C=O)=C1O)C1(C)CC2C3C(CC(O)C2C1)C3(C)C3537.5Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Antibiotic GR 95647X,1TMS,isomer #1CC(C)CC(C1=C(O)C(C=O)=C(O)C(C=O)=C1O[Si](C)(C)C)C1(C)CC2C(O)CC3C(C2C1)C3(C)C3553.9Semi standard non polar33892256
Antibiotic GR 95647X,1TMS,isomer #2CC(C)CC(C1=C(O)C(C=O)=C(O[Si](C)(C)C)C(C=O)=C1O)C1(C)CC2C(O)CC3C(C2C1)C3(C)C3558.1Semi standard non polar33892256
Antibiotic GR 95647X,1TMS,isomer #3CC(C)CC(C1=C(O)C(C=O)=C(O)C(C=O)=C1O)C1(C)CC2C(O[Si](C)(C)C)CC3C(C2C1)C3(C)C3404.3Semi standard non polar33892256
Antibiotic GR 95647X,2TMS,isomer #1CC(C)CC(C1=C(O[Si](C)(C)C)C(C=O)=C(O)C(C=O)=C1O[Si](C)(C)C)C1(C)CC2C(O)CC3C(C2C1)C3(C)C3562.6Semi standard non polar33892256
Antibiotic GR 95647X,2TMS,isomer #2CC(C)CC(C1=C(O)C(C=O)=C(O[Si](C)(C)C)C(C=O)=C1O[Si](C)(C)C)C1(C)CC2C(O)CC3C(C2C1)C3(C)C3563.3Semi standard non polar33892256
Antibiotic GR 95647X,2TMS,isomer #3CC(C)CC(C1=C(O)C(C=O)=C(O)C(C=O)=C1O[Si](C)(C)C)C1(C)CC2C(O[Si](C)(C)C)CC3C(C2C1)C3(C)C3376.5Semi standard non polar33892256
Antibiotic GR 95647X,2TMS,isomer #4CC(C)CC(C1=C(O)C(C=O)=C(O[Si](C)(C)C)C(C=O)=C1O)C1(C)CC2C(O[Si](C)(C)C)CC3C(C2C1)C3(C)C3385.3Semi standard non polar33892256
Antibiotic GR 95647X,3TMS,isomer #1CC(C)CC(C1=C(O[Si](C)(C)C)C(C=O)=C(O[Si](C)(C)C)C(C=O)=C1O[Si](C)(C)C)C1(C)CC2C(O)CC3C(C2C1)C3(C)C3601.8Semi standard non polar33892256
Antibiotic GR 95647X,3TMS,isomer #2CC(C)CC(C1=C(O[Si](C)(C)C)C(C=O)=C(O)C(C=O)=C1O[Si](C)(C)C)C1(C)CC2C(O[Si](C)(C)C)CC3C(C2C1)C3(C)C3377.8Semi standard non polar33892256
Antibiotic GR 95647X,3TMS,isomer #3CC(C)CC(C1=C(O)C(C=O)=C(O[Si](C)(C)C)C(C=O)=C1O[Si](C)(C)C)C1(C)CC2C(O[Si](C)(C)C)CC3C(C2C1)C3(C)C3375.0Semi standard non polar33892256
Antibiotic GR 95647X,4TMS,isomer #1CC(C)CC(C1=C(O[Si](C)(C)C)C(C=O)=C(O[Si](C)(C)C)C(C=O)=C1O[Si](C)(C)C)C1(C)CC2C(O[Si](C)(C)C)CC3C(C2C1)C3(C)C3417.9Semi standard non polar33892256
Antibiotic GR 95647X,1TBDMS,isomer #1CC(C)CC(C1=C(O)C(C=O)=C(O)C(C=O)=C1O[Si](C)(C)C(C)(C)C)C1(C)CC2C(O)CC3C(C2C1)C3(C)C3788.5Semi standard non polar33892256
Antibiotic GR 95647X,1TBDMS,isomer #2CC(C)CC(C1=C(O)C(C=O)=C(O[Si](C)(C)C(C)(C)C)C(C=O)=C1O)C1(C)CC2C(O)CC3C(C2C1)C3(C)C3793.9Semi standard non polar33892256
Antibiotic GR 95647X,1TBDMS,isomer #3CC(C)CC(C1=C(O)C(C=O)=C(O)C(C=O)=C1O)C1(C)CC2C(O[Si](C)(C)C(C)(C)C)CC3C(C2C1)C3(C)C3632.8Semi standard non polar33892256
Antibiotic GR 95647X,2TBDMS,isomer #1CC(C)CC(C1=C(O[Si](C)(C)C(C)(C)C)C(C=O)=C(O)C(C=O)=C1O[Si](C)(C)C(C)(C)C)C1(C)CC2C(O)CC3C(C2C1)C3(C)C4037.8Semi standard non polar33892256
Antibiotic GR 95647X,2TBDMS,isomer #2CC(C)CC(C1=C(O)C(C=O)=C(O[Si](C)(C)C(C)(C)C)C(C=O)=C1O[Si](C)(C)C(C)(C)C)C1(C)CC2C(O)CC3C(C2C1)C3(C)C4046.6Semi standard non polar33892256
Antibiotic GR 95647X,2TBDMS,isomer #3CC(C)CC(C1=C(O)C(C=O)=C(O)C(C=O)=C1O[Si](C)(C)C(C)(C)C)C1(C)CC2C(O[Si](C)(C)C(C)(C)C)CC3C(C2C1)C3(C)C3856.4Semi standard non polar33892256
Antibiotic GR 95647X,2TBDMS,isomer #4CC(C)CC(C1=C(O)C(C=O)=C(O[Si](C)(C)C(C)(C)C)C(C=O)=C1O)C1(C)CC2C(O[Si](C)(C)C(C)(C)C)CC3C(C2C1)C3(C)C3874.1Semi standard non polar33892256
Antibiotic GR 95647X,3TBDMS,isomer #1CC(C)CC(C1=C(O[Si](C)(C)C(C)(C)C)C(C=O)=C(O[Si](C)(C)C(C)(C)C)C(C=O)=C1O[Si](C)(C)C(C)(C)C)C1(C)CC2C(O)CC3C(C2C1)C3(C)C4249.7Semi standard non polar33892256
Antibiotic GR 95647X,3TBDMS,isomer #2CC(C)CC(C1=C(O[Si](C)(C)C(C)(C)C)C(C=O)=C(O)C(C=O)=C1O[Si](C)(C)C(C)(C)C)C1(C)CC2C(O[Si](C)(C)C(C)(C)C)CC3C(C2C1)C3(C)C4043.8Semi standard non polar33892256
Antibiotic GR 95647X,3TBDMS,isomer #3CC(C)CC(C1=C(O)C(C=O)=C(O[Si](C)(C)C(C)(C)C)C(C=O)=C1O[Si](C)(C)C(C)(C)C)C1(C)CC2C(O[Si](C)(C)C(C)(C)C)CC3C(C2C1)C3(C)C4056.0Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Antibiotic GR 95647X GC-MS (Non-derivatized) - 70eV, Positivesplash10-0wor-8846900000-afbbb33e18c3067947542017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Antibiotic GR 95647X GC-MS (3 TMS) - 70eV, Positivesplash10-00kb-6600319000-2e4d2c1657ca15bde6f52017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Antibiotic GR 95647X GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Antibiotic GR 95647X GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Antibiotic GR 95647X 10V, Positive-QTOFsplash10-004j-0000900000-86e9c757f9a0a42dcf462016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Antibiotic GR 95647X 20V, Positive-QTOFsplash10-0a6s-3123900000-b4f9f7cc1c321b77e7002016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Antibiotic GR 95647X 40V, Positive-QTOFsplash10-0a4i-7594600000-9f9449108687f651ae152016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Antibiotic GR 95647X 10V, Negative-QTOFsplash10-0006-0000900000-f047838adc5da0a6c6d82016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Antibiotic GR 95647X 20V, Negative-QTOFsplash10-0006-0310900000-2b7f7d3e3f572e634e4b2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Antibiotic GR 95647X 40V, Negative-QTOFsplash10-03di-8889400000-95afe449110eefa673132016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Antibiotic GR 95647X 10V, Positive-QTOFsplash10-0002-0101900000-3f3f5bf7d702c4e5d4cc2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Antibiotic GR 95647X 20V, Positive-QTOFsplash10-014i-5009300000-2a58073103e326dd62182021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Antibiotic GR 95647X 40V, Positive-QTOFsplash10-014l-7922100000-2b3e6af5183c784cbd862021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Antibiotic GR 95647X 10V, Negative-QTOFsplash10-0006-0000900000-d0cd92d84484a81e3aa42021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Antibiotic GR 95647X 20V, Negative-QTOFsplash10-014u-0105900000-7b772154626389389f772021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Antibiotic GR 95647X 40V, Negative-QTOFsplash10-0006-3139100000-78da18af65ce223084692021-09-22Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Extracellular
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB011026
KNApSAcK IDNot Available
Chemspider ID35013525
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound131751364
PDB IDNot Available
ChEBI ID141537
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .