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Showing metabocard for Ethyl (ethylthio)methyl disulfide (HMDB0033056)

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IdentificationTaxonomyOntologyPhysical propertiesSpectraBiological propertiesConcentrationsLinksReferencesXML
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:53:29 UTC
Update Date2023-02-21 17:23:02 UTC
HMDB IDHMDB0033056
Secondary Accession Numbers
  • HMDB33056
Metabolite Identification
Common NameEthyl (ethylthio)methyl disulfide
DescriptionEthyl (ethylthio)methyl disulfide belongs to the class of organic compounds known as dialkyldisulfides. These are organic compounds containing a disulfide group R-SS-R' where R and R' are both alkyl groups. Ethyl (ethylthio)methyl disulfide has been detected, but not quantified in, fruits. This could make ethyl (ethylthio)methyl disulfide a potential biomarker for the consumption of these foods. Based on a literature review a significant number of articles have been published on Ethyl (ethylthio)methyl disulfide.
Structure
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MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0033056 (Ethyl (ethylthio)methyl disulfide)


  Mrv0541 05061306532D          

  8  7  0  0  0  0            999 V2000
   -2.6664    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3349    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9520    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6204    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5230    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2375    0.7145    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    0.9059    1.1270    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    0.1914    0.7145    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
  3  1  1  0  0  0  0
  4  2  1  0  0  0  0
  6  3  1  0  0  0  0
  6  5  1  0  0  0  0
  7  4  1  0  0  0  0
  8  5  1  0  0  0  0
  8  7  1  0  0  0  0
M  END
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3D MOL for HMDB0033056 (Ethyl (ethylthio)methyl disulfide)

HMDB0033056
     RDKit          3D
Ethyl (ethylthio)methyl disulfide
 20 19  0  0  0  0  0  0  0  0999 V2000
    4.6522   -0.0811    0.3350 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4406    0.3728   -0.4481 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0626    0.8414    0.6286 S   0  0  0  0  0  0  0  0  0  0  0  0
    0.5179    0.2266   -0.0697 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8354    1.4207    0.1209 S   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5845    0.7602   -0.8367 S   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4306   -0.5640    0.0266 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7512   -0.1360    0.5982 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5559    0.0791    1.4191 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8592   -1.1680    0.1652 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5490    0.4567   -0.0492 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6882    1.2307   -1.1214 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1033   -0.4839   -1.0798 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2148   -0.6763    0.5187 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5949   -0.0047   -1.1415 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7580   -0.9582    0.8043 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6330   -1.3858   -0.7034 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5388   -0.2076   -0.1863 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0413   -0.6705    1.5137 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6655    0.9478    0.8338 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  1  9  1  0
  1 10  1  0
  1 11  1  0
  2 12  1  0
  2 13  1  0
  4 14  1  0
  4 15  1  0
  7 16  1  0
  7 17  1  0
  8 18  1  0
  8 19  1  0
  8 20  1  0
M  END
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3D SDF for HMDB0033056 (Ethyl (ethylthio)methyl disulfide)


  Mrv0541 05061306532D          

  8  7  0  0  0  0            999 V2000
   -2.6664    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3349    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9520    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6204    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5230    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2375    0.7145    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    0.9059    1.1270    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    0.1914    0.7145    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
  3  1  1  0  0  0  0
  4  2  1  0  0  0  0
  6  3  1  0  0  0  0
  6  5  1  0  0  0  0
  7  4  1  0  0  0  0
  8  5  1  0  0  0  0
  8  7  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0033056

> <DATABASE_NAME>
hmdb

> <SMILES>
CCSCSSCC

> <INCHI_IDENTIFIER>
InChI=1S/C5H12S3/c1-3-6-5-8-7-4-2/h3-5H2,1-2H3

> <INCHI_KEY>
YGYNDKHXDUVYFE-UHFFFAOYSA-N

> <FORMULA>
C5H12S3

> <MOLECULAR_WEIGHT>
168.344

> <EXACT_MASS>
168.010112454

> <JCHEM_ACCEPTOR_COUNT>
0

> <JCHEM_AVERAGE_POLARIZABILITY>
19.344335011528045

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
{[(ethylsulfanyl)methyl]disulfanyl}ethane

> <ALOGPS_LOGP>
2.61

> <JCHEM_LOGP>
2.605856823333333

> <ALOGPS_LOGS>
-2.73

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_POLAR_SURFACE_AREA>
0

> <JCHEM_REFRACTIVITY>
48.704600000000006

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.12e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
{[(ethylsulfanyl)methyl]disulfanyl}ethane

> <JCHEM_VEBER_RULE>
1

$$$$
Download

3D-SDF for HMDB0033056 (Ethyl (ethylthio)methyl disulfide)

HMDB0033056
     RDKit          3D
Ethyl (ethylthio)methyl disulfide
 20 19  0  0  0  0  0  0  0  0999 V2000
    4.6522   -0.0811    0.3350 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4406    0.3728   -0.4481 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0626    0.8414    0.6286 S   0  0  0  0  0  0  0  0  0  0  0  0
    0.5179    0.2266   -0.0697 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8354    1.4207    0.1209 S   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5845    0.7602   -0.8367 S   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4306   -0.5640    0.0266 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7512   -0.1360    0.5982 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5559    0.0791    1.4191 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8592   -1.1680    0.1652 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5490    0.4567   -0.0492 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6882    1.2307   -1.1214 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1033   -0.4839   -1.0798 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2148   -0.6763    0.5187 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5949   -0.0047   -1.1415 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7580   -0.9582    0.8043 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6330   -1.3858   -0.7034 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5388   -0.2076   -0.1863 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0413   -0.6705    1.5137 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6655    0.9478    0.8338 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  1  9  1  0
  1 10  1  0
  1 11  1  0
  2 12  1  0
  2 13  1  0
  4 14  1  0
  4 15  1  0
  7 16  1  0
  7 17  1  0
  8 18  1  0
  8 19  1  0
  8 20  1  0
M  END
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PDB for HMDB0033056 (Ethyl (ethylthio)methyl disulfide)

HEADER    PROTEIN                                 06-MAY-13   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-MAY-13         0                                  
HETATM    1  C   UNK     0      -4.977   1.334   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       4.358   2.104   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -3.644   2.104   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.025   1.334   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -0.976   2.104   0.000  0.00  0.00           C+0
HETATM    6  S   UNK     0      -2.310   1.334   0.000  0.00  0.00           S+0
HETATM    7  S   UNK     0       1.691   2.104   0.000  0.00  0.00           S+0
HETATM    8  S   UNK     0       0.357   1.334   0.000  0.00  0.00           S+0
CONECT    1    3                                                            
CONECT    2    4                                                            
CONECT    3    1    6                                                       
CONECT    4    2    7                                                       
CONECT    5    6    8                                                       
CONECT    6    3    5                                                       
CONECT    7    4    8                                                       
CONECT    8    5    7                                                       
MASTER        0    0    0    0    0    0    0    0    8    0   14    0
END
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3D PDB for HMDB0033056 (Ethyl (ethylthio)methyl disulfide)

COMPND    HMDB0033056
HETATM    1  C1  UNL     1       4.652  -0.081   0.335  1.00  0.00           C  
HETATM    2  C2  UNL     1       3.441   0.373  -0.448  1.00  0.00           C  
HETATM    3  S1  UNL     1       2.063   0.841   0.629  1.00  0.00           S  
HETATM    4  C3  UNL     1       0.518   0.227  -0.070  1.00  0.00           C  
HETATM    5  S2  UNL     1      -0.835   1.421   0.121  1.00  0.00           S  
HETATM    6  S3  UNL     1      -2.585   0.760  -0.837  1.00  0.00           S  
HETATM    7  C4  UNL     1      -3.431  -0.564   0.027  1.00  0.00           C  
HETATM    8  C5  UNL     1      -4.751  -0.136   0.598  1.00  0.00           C  
HETATM    9  H1  UNL     1       4.556   0.079   1.419  1.00  0.00           H  
HETATM   10  H2  UNL     1       4.859  -1.168   0.165  1.00  0.00           H  
HETATM   11  H3  UNL     1       5.549   0.457  -0.049  1.00  0.00           H  
HETATM   12  H4  UNL     1       3.688   1.231  -1.121  1.00  0.00           H  
HETATM   13  H5  UNL     1       3.103  -0.484  -1.080  1.00  0.00           H  
HETATM   14  H6  UNL     1       0.215  -0.676   0.519  1.00  0.00           H  
HETATM   15  H7  UNL     1       0.595  -0.005  -1.141  1.00  0.00           H  
HETATM   16  H8  UNL     1      -2.758  -0.958   0.804  1.00  0.00           H  
HETATM   17  H9  UNL     1      -3.633  -1.386  -0.703  1.00  0.00           H  
HETATM   18  H10 UNL     1      -5.539  -0.208  -0.186  1.00  0.00           H  
HETATM   19  H11 UNL     1      -5.041  -0.671   1.514  1.00  0.00           H  
HETATM   20  H12 UNL     1      -4.666   0.948   0.834  1.00  0.00           H  
CONECT    1    2    9   10   11
CONECT    2    3   12   13
CONECT    3    4
CONECT    4    5   14   15
CONECT    5    6
CONECT    6    7
CONECT    7    8   16   17
CONECT    8   18   19   20
END
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SMILES for HMDB0033056 (Ethyl (ethylthio)methyl disulfide)

CCSCSSCC
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INCHI for HMDB0033056 (Ethyl (ethylthio)methyl disulfide)

InChI=1S/C5H12S3/c1-3-6-5-8-7-4-2/h3-5H2,1-2H3
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View in JSmolView Stereo Labels
Synonyms
ValueSource
Ethyl (ethylthio)methyl disulphideGenerator
3,4,6-TrithiaoctaneHMDB
{[(ethylsulphanyl)methyl]disulphanyl}ethaneGenerator
Chemical FormulaC5H12S3
Average Molecular Weight168.344
Monoisotopic Molecular Weight168.010112454
IUPAC Name{[(ethylsulfanyl)methyl]disulfanyl}ethane
Traditional Name{[(ethylsulfanyl)methyl]disulfanyl}ethane
CAS Registry Number183554-16-7
SMILES
CCSCSSCC
InChI Identifier
InChI=1S/C5H12S3/c1-3-6-5-8-7-4-2/h3-5H2,1-2H3
InChI KeyYGYNDKHXDUVYFE-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as dialkyldisulfides. These are organic compounds containing a disulfide group R-SS-R' where R and R' are both alkyl groups.
KingdomOrganic compounds
Super ClassOrganosulfur compounds
ClassOrganic disulfides
Sub ClassDialkyldisulfides
Direct ParentDialkyldisulfides
Alternative Parents
Substituents
  • Dialkyldisulfide
  • Dialkylthioether
  • Sulfenyl compound
  • Thioether
  • Hydrocarbon derivative
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Biological locationRoute of exposureSource
ProcessNot Available
Role
Biological role
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water Solubility192.4 mg/L @ 25 °C (est)The Good Scents Company Information System
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.31 g/LALOGPS
logP2.61ALOGPS
logP2.61ChemAxon
logS-2.7ALOGPS
Physiological Charge0ChemAxon
Hydrogen Acceptor Count0ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area0 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity48.7 m³·mol⁻¹ChemAxon
Polarizability19.34 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+135.19631661259
DarkChem[M-H]-131.16931661259
DeepCCS[M+H]+136.01530932474
DeepCCS[M-H]-133.87430932474
DeepCCS[M-2H]-169.38730932474
DeepCCS[M+Na]+144.35430932474
AllCCS[M+H]+130.032859911
AllCCS[M+H-H2O]+126.432859911
AllCCS[M+NH4]+133.432859911
AllCCS[M+Na]+134.432859911
AllCCS[M-H]-139.632859911
AllCCS[M+Na-2H]-143.032859911
AllCCS[M+HCOO]-146.632859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Ethyl (ethylthio)methyl disulfideCCSCSSCC1734.1Standard polar33892256
Ethyl (ethylthio)methyl disulfideCCSCSSCC1247.1Standard non polar33892256
Ethyl (ethylthio)methyl disulfideCCSCSSCC1292.4Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Ethyl (ethylthio)methyl disulfide GC-MS (Non-derivatized) - 70eV, Positivesplash10-004i-9400000000-22e872ac2074ead7f4a82017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Ethyl (ethylthio)methyl disulfide GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ethyl (ethylthio)methyl disulfide 10V, Positive-QTOFsplash10-02t9-6900000000-41beb730319b43f34bf72016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ethyl (ethylthio)methyl disulfide 20V, Positive-QTOFsplash10-03fu-9300000000-4574ca518e8827394a8c2016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ethyl (ethylthio)methyl disulfide 40V, Positive-QTOFsplash10-03fr-9000000000-3a5fe056467405cae3d12016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ethyl (ethylthio)methyl disulfide 10V, Negative-QTOFsplash10-000i-4900000000-9119f37fa0a2d90b6c312016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ethyl (ethylthio)methyl disulfide 20V, Negative-QTOFsplash10-03di-9400000000-d7fcc6db6e35fdd5663b2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ethyl (ethylthio)methyl disulfide 40V, Negative-QTOFsplash10-0bvi-9300000000-ea691ad6c3d75f68763b2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ethyl (ethylthio)methyl disulfide 10V, Positive-QTOFsplash10-03di-9200000000-801e89e1df485c27bf932021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ethyl (ethylthio)methyl disulfide 20V, Positive-QTOFsplash10-03di-9000000000-6190efc12ee4dbac28402021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ethyl (ethylthio)methyl disulfide 40V, Positive-QTOFsplash10-01r2-9000000000-56259c706c01716e90c42021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ethyl (ethylthio)methyl disulfide 10V, Negative-QTOFsplash10-03di-9000000000-74140ab3e1c875f994092021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ethyl (ethylthio)methyl disulfide 20V, Negative-QTOFsplash10-004i-9000000000-04a3d1dbc35c61cbcfd92021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ethyl (ethylthio)methyl disulfide 40V, Negative-QTOFsplash10-03di-9000000000-0c9210770c67496252ac2021-09-22Wishart LabView Spectrum

IR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+)2023-02-04FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+)2023-02-04FELIX labView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB011049
KNApSAcK IDC00057983
Chemspider ID30776969
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound101410602
PDB IDNot Available
ChEBI ID173758
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1631301
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .