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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 18:14:21 UTC
Update Date2022-03-07 02:53:44 UTC
HMDB IDHMDB0033503
Secondary Accession Numbers
  • HMDB33503
Metabolite Identification
Common NameSmall bacteriocin
DescriptionSmall bacteriocin belongs to the class of organic compounds known as n-acyl-alpha amino acids and derivatives. N-acyl-alpha amino acids and derivatives are compounds containing an alpha amino acid (or a derivative thereof) which bears an acyl group at its terminal nitrogen atom. Based on a literature review a significant number of articles have been published on Small bacteriocin.
Structure
Data?1563862416
Synonyms
ValueSource
(7E)-3-Hydroxy-N-(2-oxooxolan-3-yl)tetradec-7-enimidateHMDB
Chemical FormulaC18H31NO4
Average Molecular Weight325.443
Monoisotopic Molecular Weight325.225308485
IUPAC Name(7E)-3-hydroxy-N-(2-oxooxolan-3-yl)tetradec-7-enamide
Traditional Name(7E)-3-hydroxy-N-(2-oxooxolan-3-yl)tetradec-7-enamide
CAS Registry Number172617-17-3
SMILES
CCCCCC\C=C\CCCC(O)CC(=O)NC1CCOC1=O
InChI Identifier
InChI=1S/C18H31NO4/c1-2-3-4-5-6-7-8-9-10-11-15(20)14-17(21)19-16-12-13-23-18(16)22/h7-8,15-16,20H,2-6,9-14H2,1H3,(H,19,21)/b8-7+
InChI KeyGFSFGXWHLLUVRK-BQYQJAHWSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as n-acyl-alpha amino acids and derivatives. N-acyl-alpha amino acids and derivatives are compounds containing an alpha amino acid (or a derivative thereof) which bears an acyl group at its terminal nitrogen atom.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentN-acyl-alpha amino acids and derivatives
Alternative Parents
Substituents
  • Alpha-amino acid ester
  • N-acyl-alpha amino acid or derivatives
  • Acyl-homoserine lactone
  • Fatty amide
  • Gamma butyrolactone
  • N-acyl-amine
  • Fatty acyl
  • Tetrahydrofuran
  • Carboxamide group
  • Carboxylic acid ester
  • Lactone
  • Secondary alcohol
  • Secondary carboxylic acid amide
  • Oxacycle
  • Monocarboxylic acid or derivatives
  • Organoheterocyclic compound
  • Hydrocarbon derivative
  • Organic oxide
  • Organopnictogen compound
  • Alcohol
  • Organic nitrogen compound
  • Organonitrogen compound
  • Organooxygen compound
  • Organic oxygen compound
  • Carbonyl group
  • Aliphatic heteromonocyclic compound
Molecular FrameworkAliphatic heteromonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Process
Role
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.054 g/LALOGPS
logP3.7ALOGPS
logP2.92ChemAxon
logS-3.8ALOGPS
pKa (Strongest Acidic)12.4ChemAxon
pKa (Strongest Basic)-1.7ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area75.63 ŲChemAxon
Rotatable Bond Count12ChemAxon
Refractivity90.73 m³·mol⁻¹ChemAxon
Polarizability38.1 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+183.07131661259
DarkChem[M-H]-181.66131661259
DeepCCS[M+H]+183.31930932474
DeepCCS[M-H]-180.96130932474
DeepCCS[M-2H]-213.84630932474
DeepCCS[M+Na]+189.41230932474
AllCCS[M+H]+184.732859911
AllCCS[M+H-H2O]+182.032859911
AllCCS[M+NH4]+187.332859911
AllCCS[M+Na]+188.032859911
AllCCS[M-H]-184.632859911
AllCCS[M+Na-2H]-185.732859911
AllCCS[M+HCOO]-187.032859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Small bacteriocinCCCCCC\C=C\CCCC(O)CC(=O)NC1CCOC1=O3657.4Standard polar33892256
Small bacteriocinCCCCCC\C=C\CCCC(O)CC(=O)NC1CCOC1=O2471.4Standard non polar33892256
Small bacteriocinCCCCCC\C=C\CCCC(O)CC(=O)NC1CCOC1=O2715.1Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Small bacteriocin,1TMS,isomer #1CCCCCC/C=C/CCCC(CC(=O)NC1CCOC1=O)O[Si](C)(C)C2692.7Semi standard non polar33892256
Small bacteriocin,1TMS,isomer #2CCCCCC/C=C/CCCC(O)CC(=O)N(C1CCOC1=O)[Si](C)(C)C2658.2Semi standard non polar33892256
Small bacteriocin,2TMS,isomer #1CCCCCC/C=C/CCCC(CC(=O)N(C1CCOC1=O)[Si](C)(C)C)O[Si](C)(C)C2676.5Semi standard non polar33892256
Small bacteriocin,2TMS,isomer #1CCCCCC/C=C/CCCC(CC(=O)N(C1CCOC1=O)[Si](C)(C)C)O[Si](C)(C)C2717.6Standard non polar33892256
Small bacteriocin,1TBDMS,isomer #1CCCCCC/C=C/CCCC(CC(=O)NC1CCOC1=O)O[Si](C)(C)C(C)(C)C2910.9Semi standard non polar33892256
Small bacteriocin,1TBDMS,isomer #2CCCCCC/C=C/CCCC(O)CC(=O)N(C1CCOC1=O)[Si](C)(C)C(C)(C)C2876.9Semi standard non polar33892256
Small bacteriocin,2TBDMS,isomer #1CCCCCC/C=C/CCCC(CC(=O)N(C1CCOC1=O)[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3104.5Semi standard non polar33892256
Small bacteriocin,2TBDMS,isomer #1CCCCCC/C=C/CCCC(CC(=O)N(C1CCOC1=O)[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3105.4Standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Small bacteriocin GC-MS (Non-derivatized) - 70eV, Positivesplash10-00gr-5941000000-6647df7cc64a8172c3532017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Small bacteriocin GC-MS (1 TMS) - 70eV, Positivesplash10-00g1-9473000000-7937f7e4c4a14d0acbd12017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Small bacteriocin GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Small bacteriocin 10V, Positive-QTOFsplash10-0zi0-1819000000-62f59a92dfe2b8f307fc2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Small bacteriocin 20V, Positive-QTOFsplash10-0udi-4911000000-77d63cd1c42dfc33504e2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Small bacteriocin 40V, Positive-QTOFsplash10-0udi-9700000000-7319d78332b92493382a2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Small bacteriocin 10V, Negative-QTOFsplash10-00di-0229000000-3628a4a94cb504cc5cba2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Small bacteriocin 20V, Negative-QTOFsplash10-0kgo-4953000000-4c4618238c0055ba79842016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Small bacteriocin 40V, Negative-QTOFsplash10-007n-9210000000-c80e77b8a4e18bf7a9e62016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Small bacteriocin 10V, Negative-QTOFsplash10-00di-0149000000-2af4b4872e85e29c2f8a2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Small bacteriocin 20V, Negative-QTOFsplash10-01b9-4595000000-69fe5d89eb073c882cc62021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Small bacteriocin 40V, Negative-QTOFsplash10-001l-9320000000-c60866d9587b8294ca932021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Small bacteriocin 10V, Positive-QTOFsplash10-0fb9-5925000000-7f0850bc8c6ee65ae0fe2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Small bacteriocin 20V, Positive-QTOFsplash10-0udi-9811000000-c48fd0e1af9c7800dc572021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Small bacteriocin 40V, Positive-QTOFsplash10-0pec-9200000000-2178dac80a7fd466eae02021-09-24Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Extracellular
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB011555
KNApSAcK IDC00057142
Chemspider ID16404569
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound17933559
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .