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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 18:28:06 UTC
Update Date2022-03-07 02:53:50 UTC
HMDB IDHMDB0033712
Secondary Accession Numbers
  • HMDB33712
Metabolite Identification
Common NameGlycyrin
DescriptionGlycyrin belongs to the class of organic compounds known as hydroxyisoflavonoids. These are organic compounds containing an isoflavonoid skeleton carrying one or more hydroxyl groups. Thus, glycyrin is considered to be a flavonoid. Glycyrin has been detected, but not quantified in, root vegetables. This could make glycyrin a potential biomarker for the consumption of these foods. Glycyrin is a secondary metabolite. Secondary metabolites are metabolically or physiologically non-essential metabolites that may serve a role as defense or signalling molecules. In some cases they are simply molecules that arise from the incomplete metabolism of other secondary metabolites. Based on a literature review a significant number of articles have been published on Glycyrin.
Structure
Data?1563862448
Synonyms
ValueSource
3-(2',4'-Dihydroxyphenyl)-5,7-dimethoxy-2-isopentenylcoumarinChEBI
3-(2,4-Dihydroxyphenyl)-5,7-dimethoxy-6-(3-methyl-but-2-enyl)-1-benzopyran-2-oneChEBI
3-(2,4-Dihydroxyphenyl)-5,7-dimethoxy-6-prenylcoumarinChEBI
3-(2,4-Dihydroxyphenyl)-5,7-dimethoxy-6-(3-methyl-2-butenyl)-2H-1-benzopyran-2-one, 9ciHMDB
Chemical FormulaC22H22O6
Average Molecular Weight382.4065
Monoisotopic Molecular Weight382.141638436
IUPAC Name3-(2,4-dihydroxyphenyl)-5,7-dimethoxy-6-(3-methylbut-2-en-1-yl)-2H-chromen-2-one
Traditional Nameglycyrin
CAS Registry Number66056-18-6
SMILES
COC1=CC2=C(C=C(C(=O)O2)C2=C(O)C=C(O)C=C2)C(OC)=C1CC=C(C)C
InChI Identifier
InChI=1S/C22H22O6/c1-12(2)5-7-15-19(26-3)11-20-17(21(15)27-4)10-16(22(25)28-20)14-8-6-13(23)9-18(14)24/h5-6,8-11,23-24H,7H2,1-4H3
InChI KeyFWWGXZYUURXJLK-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as hydroxyisoflavonoids. These are organic compounds containing an isoflavonoid skeleton carrying one or more hydroxyl groups.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassIsoflavonoids
Sub ClassHydroxyisoflavonoids
Direct ParentHydroxyisoflavonoids
Alternative Parents
Substituents
  • Hydroxyisoflavonoid
  • Isoflav-3-enone skeleton
  • Coumarin
  • Benzopyran
  • 1-benzopyran
  • Anisole
  • Resorcinol
  • 1-hydroxy-4-unsubstituted benzenoid
  • 1-hydroxy-2-unsubstituted benzenoid
  • Alkyl aryl ether
  • Pyranone
  • Phenol
  • Monocyclic benzene moiety
  • Benzenoid
  • Pyran
  • Heteroaromatic compound
  • Lactone
  • Organoheterocyclic compound
  • Ether
  • Oxacycle
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Organooxygen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External Descriptors
Ontology
Not AvailableNot Available
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point209 - 211 °CNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.0052 g/LALOGPS
logP4.29ALOGPS
logP4.26ChemAxon
logS-4.9ALOGPS
pKa (Strongest Acidic)8.49ChemAxon
pKa (Strongest Basic)-4.6ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area85.22 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity107.13 m³·mol⁻¹ChemAxon
Polarizability41.04 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+190.14431661259
DarkChem[M-H]-194.04631661259
DeepCCS[M+H]+192.12930932474
DeepCCS[M-H]-189.76330932474
DeepCCS[M-2H]-223.26330932474
DeepCCS[M+Na]+198.36230932474
AllCCS[M+H]+192.232859911
AllCCS[M+H-H2O]+189.232859911
AllCCS[M+NH4]+195.032859911
AllCCS[M+Na]+195.832859911
AllCCS[M-H]-192.132859911
AllCCS[M+Na-2H]-191.832859911
AllCCS[M+HCOO]-191.632859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
GlycyrinCOC1=CC2=C(C=C(C(=O)O2)C2=C(O)C=C(O)C=C2)C(OC)=C1CC=C(C)C4485.3Standard polar33892256
GlycyrinCOC1=CC2=C(C=C(C(=O)O2)C2=C(O)C=C(O)C=C2)C(OC)=C1CC=C(C)C3147.2Standard non polar33892256
GlycyrinCOC1=CC2=C(C=C(C(=O)O2)C2=C(O)C=C(O)C=C2)C(OC)=C1CC=C(C)C3520.4Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Glycyrin,1TMS,isomer #1COC1=CC2=C(C=C(C3=CC=C(O)C=C3O[Si](C)(C)C)C(=O)O2)C(OC)=C1CC=C(C)C3239.0Semi standard non polar33892256
Glycyrin,1TMS,isomer #2COC1=CC2=C(C=C(C3=CC=C(O[Si](C)(C)C)C=C3O)C(=O)O2)C(OC)=C1CC=C(C)C3239.7Semi standard non polar33892256
Glycyrin,2TMS,isomer #1COC1=CC2=C(C=C(C3=CC=C(O[Si](C)(C)C)C=C3O[Si](C)(C)C)C(=O)O2)C(OC)=C1CC=C(C)C3166.0Semi standard non polar33892256
Glycyrin,1TBDMS,isomer #1COC1=CC2=C(C=C(C3=CC=C(O)C=C3O[Si](C)(C)C(C)(C)C)C(=O)O2)C(OC)=C1CC=C(C)C3460.7Semi standard non polar33892256
Glycyrin,1TBDMS,isomer #2COC1=CC2=C(C=C(C3=CC=C(O[Si](C)(C)C(C)(C)C)C=C3O)C(=O)O2)C(OC)=C1CC=C(C)C3482.8Semi standard non polar33892256
Glycyrin,2TBDMS,isomer #1COC1=CC2=C(C=C(C3=CC=C(O[Si](C)(C)C(C)(C)C)C=C3O[Si](C)(C)C(C)(C)C)C(=O)O2)C(OC)=C1CC=C(C)C3584.5Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Glycyrin GC-MS (Non-derivatized) - 70eV, Positivesplash10-0uy0-1009000000-e10b5c87cd3e40d3ddf52017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Glycyrin GC-MS (2 TMS) - 70eV, Positivesplash10-03xr-2010940000-490a0c7e0aa72ef3260d2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Glycyrin GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glycyrin 10V, Positive-QTOFsplash10-001i-0009000000-d671f6f5ea2b7fabeb0c2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glycyrin 20V, Positive-QTOFsplash10-0159-2119000000-127cecdd72c2e4c6a2132016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glycyrin 40V, Positive-QTOFsplash10-0gb9-7294000000-7f6020f5667327121e782016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glycyrin 10V, Negative-QTOFsplash10-001i-0009000000-070e05555300ae67044b2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glycyrin 20V, Negative-QTOFsplash10-053r-0229000000-10f772f204daf7f5d5e82016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glycyrin 40V, Negative-QTOFsplash10-0a4i-4922000000-bb2e75ef892437d469b92016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glycyrin 10V, Positive-QTOFsplash10-003r-0009000000-961f8c17a02714723d7c2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glycyrin 20V, Positive-QTOFsplash10-004i-0009000000-e06b6bf9a19eec82964f2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glycyrin 40V, Positive-QTOFsplash10-02ti-1049000000-08f5dc06d250f550e36a2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glycyrin 10V, Negative-QTOFsplash10-001i-0009000000-7ff3bcbf218e8945797b2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glycyrin 20V, Negative-QTOFsplash10-001i-0009000000-537c828c53be16bbc2c82021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glycyrin 40V, Negative-QTOFsplash10-0f9i-0139000000-b312e7b4da5838b3693d2021-09-22Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB011830
KNApSAcK IDC00009785
Chemspider ID421867
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound480787
PDB IDNot Available
ChEBI ID69086
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .