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Record Information

Version

5.0

Status

Expected but not Quantified

Creation Date

2012-09-11 19:58:52 UTC

Update Date

2022-03-07 02:54:20 UTC

HMDB ID

HMDB0035041

Secondary Accession Numbers

HMDB35041

Metabolite Identification

Common Name

Gibberellin A51

Description

Gibberellin A51, also known as GA51 or 2beta-hydroxy-ga9, belongs to the class of organic compounds known as c19-gibberellin 6-carboxylic acids. These are c19-gibberellins with a carboxyl group at the 6-position. Thus, gibberellin A51 is considered to be an isoprenoid. Based on a literature review a small amount of articles have been published on Gibberellin A51.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

  Mrv1652307212019042D          

 26 30  0  0  1  0            999 V2000
    0.1402   -0.5591    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.0861    0.9376    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3767    1.5712    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1399    1.8842    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1453    0.7794    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.8608    1.4823    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4440    0.0553    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9958    0.6683    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6203    0.1046    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.7879    0.4371    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1144   -0.0036    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3958   -1.3435    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2032   -1.5143    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1553   -1.9571    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6433    0.5212    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6433   -0.3038    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6433    1.3426    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3619    0.9319    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3619   -0.7261    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.8031   -0.0720    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0732    0.5212    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.0732   -0.3038    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3659   -1.5436    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1984    0.0230    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6433   -1.1253    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7876    0.9336    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  4  6  1  0  0  0  0
  5  9  1  0  0  0  0
  6  8  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9  2  1  6  0  0  0
  6  2  1  6  0  0  0
  8 10  2  0  0  0  0
  1  9  1  0  0  0  0
  5 11  1  1  0  0  0
  1 12  1  1  0  0  0
 12 13  2  0  0  0  0
 12 14  1  0  0  0  0
 15 16  1  0  0  0  0
 15 17  1  6  0  0  0
 15 18  1  0  0  0  0
 16 19  1  0  0  0  0
 17 20  1  0  0  0  0
 18 21  1  0  0  0  0
 19 22  1  0  0  0  0
 19 23  1  0  0  0  0
 20 24  2  0  0  0  0
 19 20  1  6  0  0  0
 21 22  1  0  0  0  0
 16 25  1  1  0  0  0
 15  5  1  0  0  0  0
 16  1  1  0  0  0  0
 21 26  1  1  0  0  0
M  END

HMDB0035041
     RDKit          3D
Gibberellin A51
 48 52  0  0  0  0  0  0  0  0999 V2000
    4.4890    0.3421    0.9400 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3946    0.1440    0.2324 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2763   -0.7414    0.6579 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1753   -0.3268   -0.3015 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9875   -0.1819   -1.5889 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0908    0.7550   -1.0838 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5278    2.1542   -0.9379 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0276    2.1171   -0.7982 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6516    0.9989    0.1685 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8256    0.8068    0.1648 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5877    1.5442    1.2100 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0751    1.3167    0.9071 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.8542    1.8078    1.9265 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4092   -0.1153    0.6820 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4252   -0.8153   -0.2607 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.8427   -2.2059   -0.5409 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2989    0.0511   -1.4496 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9057   -0.0818   -2.5346 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3806    1.0385   -1.1348 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0712   -0.6745    0.3799 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0512   -1.2854   -0.4167 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.3494   -2.6686   -0.0017 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2836   -3.6397   -0.8315 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7182   -3.0372    1.2879 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6874   -0.1152    1.8973 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2816    1.0090    0.5722 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9551   -0.5429    1.7007 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5394   -1.8147    0.5448 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4108    0.2578   -2.4018 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4586   -1.1416   -1.7998 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9271    0.7328   -1.7853 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7619    2.7590   -1.8390 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9626    2.6885   -0.0770 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5285    1.9845   -1.7682 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6635    3.0549   -0.3378 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9935    1.2915    1.1622 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4141    1.0712    2.2055 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4126    2.6230    1.2111 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3334    1.8881   -0.0154 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5953    1.4735    2.8238 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4546   -0.6602    1.6370 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4009   -0.1710    0.2092 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6126   -2.4287   -1.6235 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4078   -2.9803    0.0977 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9672   -2.2618   -0.4826 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0614   -0.9596    1.4413 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2815   -1.3114   -1.4734 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4246   -3.7487    1.4250 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3
  2  3  1  0
  4  3  1  1
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 12 14  1  0
 14 15  1  0
 15 16  1  6
 15 17  1  0
 17 18  2  0
 17 19  1  0
 15 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  2  0
 22 24  1  0
  6  2  1  0
 10 19  1  6
  9  4  1  0
 20 10  1  0
 21  4  1  0
  1 25  1  0
  1 26  1  0
  3 27  1  0
  3 28  1  0
  5 29  1  0
  5 30  1  0
  6 31  1  6
  7 32  1  0
  7 33  1  0
  8 34  1  0
  8 35  1  0
  9 36  1  1
 11 37  1  0
 11 38  1  0
 12 39  1  6
 13 40  1  0
 14 41  1  0
 14 42  1  0
 16 43  1  0
 16 44  1  0
 16 45  1  0
 20 46  1  1
 21 47  1  6
 24 48  1  0
M  END

  Mrv1652307212019042D          

 26 30  0  0  1  0            999 V2000
    0.1402   -0.5591    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.0861    0.9376    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3767    1.5712    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1399    1.8842    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1453    0.7794    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.8608    1.4823    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4440    0.0553    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9958    0.6683    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6203    0.1046    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.7879    0.4371    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1144   -0.0036    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3958   -1.3435    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2032   -1.5143    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1553   -1.9571    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6433    0.5212    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6433   -0.3038    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6433    1.3426    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3619    0.9319    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3619   -0.7261    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.8031   -0.0720    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0732    0.5212    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.0732   -0.3038    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3659   -1.5436    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1984    0.0230    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6433   -1.1253    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7876    0.9336    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  4  6  1  0  0  0  0
  5  9  1  0  0  0  0
  6  8  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9  2  1  6  0  0  0
  6  2  1  6  0  0  0
  8 10  2  0  0  0  0
  1  9  1  0  0  0  0
  5 11  1  1  0  0  0
  1 12  1  1  0  0  0
 12 13  2  0  0  0  0
 12 14  1  0  0  0  0
 15 16  1  0  0  0  0
 15 17  1  6  0  0  0
 15 18  1  0  0  0  0
 16 19  1  0  0  0  0
 17 20  1  0  0  0  0
 18 21  1  0  0  0  0
 19 22  1  0  0  0  0
 19 23  1  0  0  0  0
 20 24  2  0  0  0  0
 19 20  1  6  0  0  0
 21 22  1  0  0  0  0
 16 25  1  1  0  0  0
 15  5  1  0  0  0  0
 16  1  1  0  0  0  0
 21 26  1  1  0  0  0
M  END
> <DATABASE_ID>
HMDB0035041

> <DATABASE_NAME>
hmdb

> <SMILES>
[H][C@@]12CC[C@@H]3C[C@]1(CC3=C)[C@@H](C(O)=O)[C@]1([H])[C@@]3(C)C[C@@H](O)C[C@@]21OC3=O

> <INCHI_IDENTIFIER>
InChI=1S/C19H24O5/c1-9-5-18-6-10(9)3-4-12(18)19-8-11(20)7-17(2,16(23)24-19)14(19)13(18)15(21)22/h10-14,20H,1,3-8H2,2H3,(H,21,22)/t10-,11-,12-,13-,14-,17-,18+,19-/m1/s1

> <INCHI_KEY>
HHDWSDSMWJQURA-MHKXYFPYSA-N

> <FORMULA>
C19H24O5

> <MOLECULAR_WEIGHT>
332.396

> <EXACT_MASS>
332.162373873

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
48

> <JCHEM_AVERAGE_POLARIZABILITY>
34.7026163596332

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R,2R,5R,8R,9S,10R,11R,13R)-13-hydroxy-11-methyl-6-methylidene-16-oxo-15-oxapentacyclo[9.3.2.1^{5,8}.0^{1,10}.0^{2,8}]heptadecane-9-carboxylic acid

> <ALOGPS_LOGP>
1.31

> <JCHEM_LOGP>
1.3316183193333333

> <ALOGPS_LOGS>
-2.37

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
15.126405452565091

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.288356161801572

> <JCHEM_PKA_STRONGEST_BASIC>
-2.7435496645610336

> <JCHEM_POLAR_SURFACE_AREA>
83.83

> <JCHEM_REFRACTIVITY>
84.18919999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.43e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R,2R,5R,8R,9S,10R,11R,13R)-13-hydroxy-11-methyl-6-methylidene-16-oxo-15-oxapentacyclo[9.3.2.1^{5,8}.0^{1,10}.0^{2,8}]heptadecane-9-carboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0035041
     RDKit          3D
Gibberellin A51
 48 52  0  0  0  0  0  0  0  0999 V2000
    4.4890    0.3421    0.9400 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3946    0.1440    0.2324 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2763   -0.7414    0.6579 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1753   -0.3268   -0.3015 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9875   -0.1819   -1.5889 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0908    0.7550   -1.0838 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5278    2.1542   -0.9379 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0276    2.1171   -0.7982 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6516    0.9989    0.1685 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8256    0.8068    0.1648 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5877    1.5442    1.2100 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0751    1.3167    0.9071 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.8542    1.8078    1.9265 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4092   -0.1153    0.6820 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4252   -0.8153   -0.2607 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.8427   -2.2059   -0.5409 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2989    0.0511   -1.4496 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9057   -0.0818   -2.5346 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3806    1.0385   -1.1348 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0712   -0.6745    0.3799 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0512   -1.2854   -0.4167 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.3494   -2.6686   -0.0017 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2836   -3.6397   -0.8315 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7182   -3.0372    1.2879 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6874   -0.1152    1.8973 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2816    1.0090    0.5722 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9551   -0.5429    1.7007 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5394   -1.8147    0.5448 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4108    0.2578   -2.4018 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4586   -1.1416   -1.7998 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9271    0.7328   -1.7853 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7619    2.7590   -1.8390 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9626    2.6885   -0.0770 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5285    1.9845   -1.7682 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6635    3.0549   -0.3378 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9935    1.2915    1.1622 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4141    1.0712    2.2055 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4126    2.6230    1.2111 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3334    1.8881   -0.0154 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5953    1.4735    2.8238 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4546   -0.6602    1.6370 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4009   -0.1710    0.2092 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6126   -2.4287   -1.6235 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4078   -2.9803    0.0977 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9672   -2.2618   -0.4826 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0614   -0.9596    1.4413 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2815   -1.3114   -1.4734 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4246   -3.7487    1.4250 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3
  2  3  1  0
  4  3  1  1
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 12 14  1  0
 14 15  1  0
 15 16  1  6
 15 17  1  0
 17 18  2  0
 17 19  1  0
 15 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  2  0
 22 24  1  0
  6  2  1  0
 10 19  1  6
  9  4  1  0
 20 10  1  0
 21  4  1  0
  1 25  1  0
  1 26  1  0
  3 27  1  0
  3 28  1  0
  5 29  1  0
  5 30  1  0
  6 31  1  6
  7 32  1  0
  7 33  1  0
  8 34  1  0
  8 35  1  0
  9 36  1  1
 11 37  1  0
 11 38  1  0
 12 39  1  6
 13 40  1  0
 14 41  1  0
 14 42  1  0
 16 43  1  0
 16 44  1  0
 16 45  1  0
 20 46  1  1
 21 47  1  6
 24 48  1  0
M  END

HEADER    PROTEIN                                 21-JUL-20   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   21-JUL-20         0                                  
HETATM    1  C   UNK     0       0.262  -1.044   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.027   1.750   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.703   2.933   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.128   3.517   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.271   1.455   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.473   2.767   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.695   0.103   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       3.725   1.247   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.158   0.195   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       5.204   0.816   0.000  0.00  0.00           C+0
HETATM   11  H   UNK     0      -0.214  -0.007   0.000  0.00  0.00           H+0
HETATM   12  C   UNK     0       0.739  -2.508   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       2.246  -2.827   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0      -0.290  -3.653   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0      -1.201   0.973   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -1.201  -0.567   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      -1.201   2.506   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0      -2.542   1.740   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -2.542  -1.355   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -3.366  -0.134   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -3.870   0.973   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      -3.870  -0.567   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      -2.550  -2.881   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      -2.237   0.043   0.000  0.00  0.00           O+0
HETATM   25  H   UNK     0      -1.201  -2.101   0.000  0.00  0.00           H+0
HETATM   26  O   UNK     0      -5.204   1.743   0.000  0.00  0.00           O+0
CONECT    1    9   12   16                                                  
CONECT    2    9    6                                                       
CONECT    3    4    5                                                       
CONECT    4    3    6                                                       
CONECT    5    3    9   11   15                                             
CONECT    6    4    8    2                                                  
CONECT    7    8    9                                                       
CONECT    8    6    7   10                                                  
CONECT    9    5    7    2    1                                             
CONECT   10    8                                                            
CONECT   11    5                                                            
CONECT   12    1   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12                                                            
CONECT   15   16   17   18    5                                             
CONECT   16   15   19   25    1                                             
CONECT   17   15   20                                                       
CONECT   18   15   21                                                       
CONECT   19   16   22   23   20                                             
CONECT   20   17   24   19                                                  
CONECT   21   18   22   26                                                  
CONECT   22   19   21                                                       
CONECT   23   19                                                            
CONECT   24   20                                                            
CONECT   25   16                                                            
CONECT   26   21                                                            
MASTER        0    0    0    0    0    0    0    0   26    0   60    0
END

COMPND    HMDB0035041
HETATM    1  C1  UNL     1       4.489   0.342   0.940  1.00  0.00           C  
HETATM    2  C2  UNL     1       3.395   0.144   0.232  1.00  0.00           C  
HETATM    3  C3  UNL     1       2.276  -0.741   0.658  1.00  0.00           C  
HETATM    4  C4  UNL     1       1.175  -0.327  -0.302  1.00  0.00           C  
HETATM    5  C5  UNL     1       1.987  -0.182  -1.589  1.00  0.00           C  
HETATM    6  C6  UNL     1       3.091   0.755  -1.084  1.00  0.00           C  
HETATM    7  C7  UNL     1       2.528   2.154  -0.938  1.00  0.00           C  
HETATM    8  C8  UNL     1       1.028   2.117  -0.798  1.00  0.00           C  
HETATM    9  C9  UNL     1       0.652   0.999   0.169  1.00  0.00           C  
HETATM   10  C10 UNL     1      -0.826   0.807   0.165  1.00  0.00           C  
HETATM   11  C11 UNL     1      -1.588   1.544   1.210  1.00  0.00           C  
HETATM   12  C12 UNL     1      -3.075   1.317   0.907  1.00  0.00           C  
HETATM   13  O1  UNL     1      -3.854   1.808   1.927  1.00  0.00           O  
HETATM   14  C13 UNL     1      -3.409  -0.115   0.682  1.00  0.00           C  
HETATM   15  C14 UNL     1      -2.425  -0.815  -0.261  1.00  0.00           C  
HETATM   16  C15 UNL     1      -2.843  -2.206  -0.541  1.00  0.00           C  
HETATM   17  C16 UNL     1      -2.299   0.051  -1.450  1.00  0.00           C  
HETATM   18  O2  UNL     1      -2.906  -0.082  -2.535  1.00  0.00           O  
HETATM   19  O3  UNL     1      -1.381   1.039  -1.135  1.00  0.00           O  
HETATM   20  C17 UNL     1      -1.071  -0.674   0.380  1.00  0.00           C  
HETATM   21  C18 UNL     1       0.051  -1.285  -0.417  1.00  0.00           C  
HETATM   22  C19 UNL     1       0.349  -2.669  -0.002  1.00  0.00           C  
HETATM   23  O4  UNL     1       0.284  -3.640  -0.832  1.00  0.00           O  
HETATM   24  O5  UNL     1       0.718  -3.037   1.288  1.00  0.00           O  
HETATM   25  H1  UNL     1       4.687  -0.115   1.897  1.00  0.00           H  
HETATM   26  H2  UNL     1       5.282   1.009   0.572  1.00  0.00           H  
HETATM   27  H3  UNL     1       1.955  -0.543   1.701  1.00  0.00           H  
HETATM   28  H4  UNL     1       2.539  -1.815   0.545  1.00  0.00           H  
HETATM   29  H5  UNL     1       1.411   0.258  -2.402  1.00  0.00           H  
HETATM   30  H6  UNL     1       2.459  -1.142  -1.800  1.00  0.00           H  
HETATM   31  H7  UNL     1       3.927   0.733  -1.785  1.00  0.00           H  
HETATM   32  H8  UNL     1       2.762   2.759  -1.839  1.00  0.00           H  
HETATM   33  H9  UNL     1       2.963   2.689  -0.077  1.00  0.00           H  
HETATM   34  H10 UNL     1       0.528   1.985  -1.768  1.00  0.00           H  
HETATM   35  H11 UNL     1       0.664   3.055  -0.338  1.00  0.00           H  
HETATM   36  H12 UNL     1       0.993   1.292   1.162  1.00  0.00           H  
HETATM   37  H13 UNL     1      -1.414   1.071   2.205  1.00  0.00           H  
HETATM   38  H14 UNL     1      -1.413   2.623   1.211  1.00  0.00           H  
HETATM   39  H15 UNL     1      -3.333   1.888  -0.015  1.00  0.00           H  
HETATM   40  H16 UNL     1      -3.595   1.473   2.824  1.00  0.00           H  
HETATM   41  H17 UNL     1      -3.455  -0.660   1.637  1.00  0.00           H  
HETATM   42  H18 UNL     1      -4.401  -0.171   0.209  1.00  0.00           H  
HETATM   43  H19 UNL     1      -2.613  -2.429  -1.624  1.00  0.00           H  
HETATM   44  H20 UNL     1      -2.408  -2.980   0.098  1.00  0.00           H  
HETATM   45  H21 UNL     1      -3.967  -2.262  -0.483  1.00  0.00           H  
HETATM   46  H22 UNL     1      -1.061  -0.960   1.441  1.00  0.00           H  
HETATM   47  H23 UNL     1      -0.281  -1.311  -1.473  1.00  0.00           H  
HETATM   48  H24 UNL     1       1.425  -3.749   1.425  1.00  0.00           H  
CONECT    1    2    2   25   26
CONECT    2    3    6
CONECT    3    4   27   28
CONECT    4    5    9   21
CONECT    5    6   29   30
CONECT    6    7   31
CONECT    7    8   32   33
CONECT    8    9   34   35
CONECT    9   10   36
CONECT   10   11   19   20
CONECT   11   12   37   38
CONECT   12   13   14   39
CONECT   13   40
CONECT   14   15   41   42
CONECT   15   16   17   20
CONECT   16   43   44   45
CONECT   17   18   18   19
CONECT   20   21   46
CONECT   21   22   47
CONECT   22   23   23   24
CONECT   24   48
END

HMDB0035041
     RDKit          3D
Gibberellin A51
 48 52  0  0  0  0  0  0  0  0999 V2000
    4.4890    0.3421    0.9400 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3946    0.1440    0.2324 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2763   -0.7414    0.6579 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1753   -0.3268   -0.3015 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9875   -0.1819   -1.5889 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0908    0.7550   -1.0838 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5278    2.1542   -0.9379 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0276    2.1171   -0.7982 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6516    0.9989    0.1685 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8256    0.8068    0.1648 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.5877    1.5442    1.2100 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0751    1.3167    0.9071 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.8542    1.8078    1.9265 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4092   -0.1153    0.6820 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4252   -0.8153   -0.2607 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.8427   -2.2059   -0.5409 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2989    0.0511   -1.4496 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9057   -0.0818   -2.5346 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3806    1.0385   -1.1348 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0712   -0.6745    0.3799 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0512   -1.2854   -0.4167 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.3494   -2.6686   -0.0017 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2836   -3.6397   -0.8315 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7182   -3.0372    1.2879 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6874   -0.1152    1.8973 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2816    1.0090    0.5722 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9551   -0.5429    1.7007 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5394   -1.8147    0.5448 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4108    0.2578   -2.4018 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4586   -1.1416   -1.7998 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9271    0.7328   -1.7853 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7619    2.7590   -1.8390 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9626    2.6885   -0.0770 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5285    1.9845   -1.7682 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6635    3.0549   -0.3378 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9935    1.2915    1.1622 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4141    1.0712    2.2055 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4126    2.6230    1.2111 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3334    1.8881   -0.0154 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5953    1.4735    2.8238 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4546   -0.6602    1.6370 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4009   -0.1710    0.2092 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6126   -2.4287   -1.6235 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4078   -2.9803    0.0977 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9672   -2.2618   -0.4826 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0614   -0.9596    1.4413 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2815   -1.3114   -1.4734 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4246   -3.7487    1.4250 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3
  2  3  1  0
  4  3  1  1
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 12 14  1  0
 14 15  1  0
 15 16  1  6
 15 17  1  0
 17 18  2  0
 17 19  1  0
 15 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  2  0
 22 24  1  0
  6  2  1  0
 10 19  1  6
  9  4  1  0
 20 10  1  0
 21  4  1  0
  1 25  1  0
  1 26  1  0
  3 27  1  0
  3 28  1  0
  5 29  1  0
  5 30  1  0
  6 31  1  6
  7 32  1  0
  7 33  1  0
  8 34  1  0
  8 35  1  0
  9 36  1  1
 11 37  1  0
 11 38  1  0
 12 39  1  6
 13 40  1  0
 14 41  1  0
 14 42  1  0
 16 43  1  0
 16 44  1  0
 16 45  1  0
 20 46  1  1
 21 47  1  6
 24 48  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
GA51	ChEBI
2beta-Hydroxy-ga9	HMDB
2Β-hydroxy-ga9	HMDB
Gibberellin A51	HMDB

Chemical Formula

C₁₉H₂₄O₅

Average Molecular Weight

332.396

Monoisotopic Molecular Weight

332.162373873

IUPAC Name

(1R,2R,5R,8R,9S,10R,11R,13R)-13-hydroxy-11-methyl-6-methylidene-16-oxo-15-oxapentacyclo[9.3.2.1^{5,8}.0^{1,10}.0^{2,8}]heptadecane-9-carboxylic acid

Traditional Name

(1R,2R,5R,8R,9S,10R,11R,13R)-13-hydroxy-11-methyl-6-methylidene-16-oxo-15-oxapentacyclo[9.3.2.1^{5,8}.0^{1,10}.0^{2,8}]heptadecane-9-carboxylic acid

CAS Registry Number

56978-14-4

SMILES

[H][C@@]12CC[C@@H]3C[C@]1(CC3=C)[C@@H](C(O)=O)[C@]1([H])[C@@]3(C)C[C@@H](O)C[C@@]21OC3=O

InChI Identifier

InChI=1S/C19H24O5/c1-9-5-18-6-10(9)3-4-12(18)19-8-11(20)7-17(2,16(23)24-19)14(19)13(18)15(21)22/h10-14,20H,1,3-8H2,2H3,(H,21,22)/t10-,11-,12-,13-,14-,17-,18+,19-/m1/s1

InChI Key

HHDWSDSMWJQURA-MHKXYFPYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as c19-gibberellin 6-carboxylic acids. These are c19-gibberellins with a carboxyl group at the 6-position.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

C19-gibberellin 6-carboxylic acids

Alternative Parents

Substituents

20-norgibberellane-6-carboxylic acid
2-hydroxy,20-norgibberellane
Diterpene lactone
Caprolactone
Oxepane
Dicarboxylic acid or derivatives
Gamma butyrolactone
Cyclic alcohol
Tetrahydrofuran
Carboxylic acid ester
Lactone
Secondary alcohol
Organoheterocyclic compound
Oxacycle
Carboxylic acid
Carboxylic acid derivative
Hydrocarbon derivative
Organic oxide
Alcohol
Carbonyl group
Organooxygen compound
Organic oxygen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

lactone (CHEBI:29599 )
C19-gibberellin (CHEBI:29599 )
gibberellin monocarboxylic acid (CHEBI:29599 )
Gibberellins (C11865 )
Gibberellins (LMPR0104170022 )

Ontology

Physiological effect

Not Available

Disposition

Biological location

Cellular substructure

Source

Exogenous

Exogenous (HMDB: HMDB0035041)

Herbs and Spices (FooDB: FOOD00866)

Nut

Almond (FooDB: FOOD00148)
Brazil nut (FooDB: FOOD00024)
Cashew nut (FooDB: FOOD00011)
Chestnut (FooDB: FOOD00045)
Hazelnut (FooDB: FOOD00376)
Peanut (FooDB: FOOD00016)
Pecan nut (FooDB: FOOD00044)
Pine nut (FooDB: FOOD00138)
Pistachio (FooDB: FOOD00140)
Walnut (FooDB: FOOD00608)
Acorn (FooDB: FOOD00282)
Beech nut (FooDB: FOOD00299)
Butternut (FooDB: FOOD00316)
Chinese chestnut (FooDB: FOOD00331)
European chestnut (FooDB: FOOD00363)
Hickory nut (FooDB: FOOD00377)
Macadamia nut (FooDB: FOOD00525)
Mixed nuts (FooDB: FOOD00771)
Pili nut (FooDB: FOOD00432)
Colorado pinyon (FooDB: FOOD00433)
Black walnut (FooDB: FOOD00093)
Common walnut (FooDB: FOOD00094)
Japanese chestnut (FooDB: FOOD00385)
Common hazelnut (FooDB: FOOD00062)
Macadamia nut (M. tetraphylla) (FooDB: FOOD00225)
Japanese walnut (FooDB: FOOD00240)
Nuts (FooDB: FOOD00869)

Fruit

Pome

Drupe

Apricot (FooDB: FOOD00144)
Prunus (Cherry, Plum) (FooDB: FOOD00143)
Nectarine (FooDB: FOOD00229)
Peach (FooDB: FOOD00149)
European plum (FooDB: FOOD00147)
Sour cherry (FooDB: FOOD00146)
Sweet cherry (FooDB: FOOD00145)
Common chokecherry (FooDB: FOOD00562)
Peach (var.) (FooDB: FOOD00230)

Tropical fruit

Berry

Bilberry (FooDB: FOOD00193)
Rubus (Blackberry, Raspberry) (FooDB: FOOD00160)
Vaccinium (Blueberry, Cranberry, Huckleberry) (FooDB: FOOD00188)
Blackcurrant (FooDB: FOOD00155)
Redcurrant (FooDB: FOOD00156)
Elderberry (FooDB: FOOD00358)
Gooseberry (FooDB: FOOD00157)
Grape (FooDB: FOOD00369)
Lingonberry (FooDB: FOOD00194)
Loganberry (FooDB: FOOD00400)
Strawberry (FooDB: FOOD00083)
Boysenberry (FooDB: FOOD00542)
American cranberry (FooDB: FOOD00192)
Common grape (FooDB: FOOD00204)
Strawberry guava (FooDB: FOOD00482)
Black mulberry (FooDB: FOOD00117)
Red raspberry (FooDB: FOOD00162)
Muscadine grape (FooDB: FOOD00203)
Salmonberry (FooDB: FOOD00456)
Alaska blueberry (FooDB: FOOD00380)
Sea-buckthornberry (FooDB: FOOD00087)
Black elderberry (FooDB: FOOD00166)
Black crowberry (FooDB: FOOD00075)
Black huckleberry (FooDB: FOOD00084)
Mulberry (FooDB: FOOD00116)
Black chokeberry (FooDB: FOOD00136)
Cloudberry (FooDB: FOOD00161)
Black raspberry (FooDB: FOOD00163)
Rowanberry (FooDB: FOOD00176)
Lowbush blueberry (FooDB: FOOD00189)
Sparkleberry (FooDB: FOOD00190)
Highbush blueberry (FooDB: FOOD00191)
Arctic blackberry (FooDB: FOOD00207)
Bayberry (FooDB: FOOD00209)
Elliott's blueberry (FooDB: FOOD00210)
Canada blueberry (FooDB: FOOD00211)
Bog bilberry (FooDB: FOOD00212)
Buffalo currant (FooDB: FOOD00213)
European cranberry (FooDB: FOOD00217)
Deerberry (FooDB: FOOD00218)
Cascade huckleberry (FooDB: FOOD00220)
Oval-leaf huckleberry (FooDB: FOOD00221)
Evergreen huckleberry (FooDB: FOOD00222)
Red huckleberry (FooDB: FOOD00223)
Summer grape (FooDB: FOOD00227)
Fox grape (FooDB: FOOD00228)
Half-highbush blueberry (FooDB: FOOD00248)
Jostaberry (FooDB: FOOD00257)
Sweet rowanberry (FooDB: FOOD00265)
Skunk currant (FooDB: FOOD00267)
Squashberry (FooDB: FOOD00344)
Ohelo berry (FooDB: FOOD00419)
Chinese bayberry (FooDB: FOOD00852)
Saskatoon berry (FooDB: FOOD00884)
Nanking cherry (FooDB: FOOD00885)

Other fruit

Date (FooDB: FOOD00135)
Fig (FooDB: FOOD00081)
Jujube (FooDB: FOOD00388)

Citrus

Grapefruit (FooDB: FOOD00256)
Lemon (FooDB: FOOD00054)
Lime (FooDB: FOOD00053)
Sweet orange (FooDB: FOOD00057)
Mandarin orange (Clementine, Tangerine) (FooDB: FOOD00056)
Persian lime (FooDB: FOOD00543)
Pummelo (FooDB: FOOD00055)
Grapefruit/Pummelo hybrid (FooDB: FOOD00255)
Citrus (FooDB: FOOD00859)

Fruits (FooDB: FOOD00871)

Vegetable

Shoot vegetable

Fruit vegetable

Eggplant (FooDB: FOOD00174)
Avocado (FooDB: FOOD00130)
Groundcherry (FooDB: FOOD00371)
Olive (FooDB: FOOD00121)
Pepper (FooDB: FOOD00040)
Garden tomato (FooDB: FOOD00171)
Mexican groundcherry (FooDB: FOOD00491)
Green bell pepper (FooDB: FOOD00877)
Yellow bell pepper (FooDB: FOOD00878)
Red bell pepper (FooDB: FOOD00880)
Italian sweet red pepper (FooDB: FOOD00881)
Garden tomato (var.) (FooDB: FOOD00173)
Cherry tomato (FooDB: FOOD00172)
Pepper (C. baccatum) (FooDB: FOOD00231)
Pepper (C. chinense) (FooDB: FOOD00232)
Pepper (Capsicum) (FooDB: FOOD00233)
Pepper (C. frutescens) (FooDB: FOOD00428)
Pepper (C. pubescens) (FooDB: FOOD00849)
Orange bell pepper (FooDB: FOOD00879)

Root vegetable

Cabbage

Leaf vegetable

Lettuce (FooDB: FOOD00095)
Swiss chard (FooDB: FOOD00237)
Garden cress (FooDB: FOOD00099)
Endive (FooDB: FOOD00048)
Spinach (FooDB: FOOD00178)
Common beet (FooDB: FOOD00025)
Garland chrysanthemum (FooDB: FOOD00333)
Jute (FooDB: FOOD00389)
Lambsquarters (FooDB: FOOD00394)
New Zealand spinach (FooDB: FOOD00415)
Swamp cabbage (FooDB: FOOD00091)
Rocket salad (ssp.) (FooDB: FOOD00077)
Yautia (FooDB: FOOD00510)
Romaine lettuce (FooDB: FOOD00888)
Rocket salad (FooDB: FOOD00244)
Chicory leaves (FooDB: FOOD00250)
Corn salad (FooDB: FOOD00340)
Malabar spinach (FooDB: FOOD00404)
Ostrich fern (FooDB: FOOD00556)
Green vegetables (FooDB: FOOD00872)

Mushroom

Tuber

Onion-family vegetable

Leek (FooDB: FOOD00007)
Allium (FooDB: FOOD00005)
Wild leek (FooDB: FOOD00396)
Shallot (FooDB: FOOD00243)
Garden onion (FooDB: FOOD00006)
Garden onion (var.) (FooDB: FOOD00226)
Onion-family vegetables (FooDB: FOOD00855)
Green onion (FooDB: FOOD00963)
Red onion (FooDB: FOOD00962)

Other vegetable

Okra (FooDB: FOOD00420)
Horseradish tree (FooDB: FOOD00379)
Sacred lotus (FooDB: FOOD00402)
Tree fern (FooDB: FOOD00797)
Chinese water chestnut (FooDB: FOOD00332)
Nopal (FooDB: FOOD00416)
Carob (FooDB: FOOD00321)
Agave (FooDB: FOOD00563)
Narrowleaf cattail (FooDB: FOOD00564)
Giant butterbur (FooDB: FOOD00314)
Sesbania flower (FooDB: FOOD00469)

Stalk vegetable

Brassica

Brassicas (FooDB: FOOD00857)

Cereal and cereal product

Other bread

Other bread (FooDB: FOOD00269)

Cereal

Cereal product

Dough

Sourdough (FooDB: FOOD00275)

Cereals and cereal products (FooDB: FOOD00858)

Pulse

Bean

Lentil

Lentils (FooDB: FOOD00098)

Pea

Other pulse

White lupine (FooDB: FOOD00403)
Lupine (FooDB: FOOD00104)

Pulses (FooDB: FOOD00867)

Soy

Soy bean (FooDB: FOOD00085)

Soy product

Other soy product (FooDB: FOOD00271)

Abalone (FooDB: FOOD00279)
Conch (FooDB: FOOD00611)

Gourd

Chayote (FooDB: FOOD00325)
Cucumber (FooDB: FOOD00065)
Muskmelon (FooDB: FOOD00064)
Cucurbita (FooDB: FOOD00066)
Watermelon (FooDB: FOOD00052)
Bitter gourd (FooDB: FOOD00115)
Calabash (FooDB: FOOD00318)
Towel gourd (FooDB: FOOD00492)
Winter squash (FooDB: FOOD00283)
Butternut squash (FooDB: FOOD00317)
Wax gourd (FooDB: FOOD00499)
Green zucchini (FooDB: FOOD00875)
Yellow zucchini (FooDB: FOOD00876)
Japanese pumpkin (FooDB: FOOD00886)
Sunburst squash (pattypan squash) (FooDB: FOOD00874)
Tinda (FooDB: FOOD00559)
Horned melon (FooDB: FOOD00761)

Tea

Herbal tea

Greenthread tea (FooDB: FOOD00820)

Cocoa and cocoa product

Cocoa

Cocoa bean (FooDB: FOOD00182)

Endogenous

Endogenous (HMDB: HMDB0035041)

Process

Not Available

Role

Not Available

Physical Properties

State

Solid

Experimental Molecular Properties

Property	Value	Reference
Melting Point	190 - 193 °C	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
Water Solubility	1.43 g/L	ALOGPS
logP	1.31	ALOGPS
logP	1.33	ChemAxon
logS	-2.4	ALOGPS
pKa (Strongest Acidic)	4.29	ChemAxon
pKa (Strongest Basic)	-2.7	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	83.83 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	84.19 m³·mol⁻¹	ChemAxon
Polarizability	34.7 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M-2H]-	215.946	30932474
DeepCCS	[M+Na]+	191.02	30932474
AllCCS	[M+H]+	177.9	32859911
AllCCS	[M+H-H2O]+	175.1	32859911
AllCCS	[M+NH4]+	180.5	32859911
AllCCS	[M+Na]+	181.3	32859911
AllCCS	[M-H]-	182.6	32859911
AllCCS	[M+Na-2H]-	182.3	32859911
AllCCS	[M+HCOO]-	182.1	32859911

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
Gibberellin A51	[H][C@@]12CC[C@@H]3C[C@]1(CC3=C)[C@@H](C(O)=O)[C@]1([H])[C@@]3(C)C[C@@H](O)C[C@@]21OC3=O	4164.5	Standard polar	33892256
Gibberellin A51	[H][C@@]12CC[C@@H]3C[C@]1(CC3=C)[C@@H](C(O)=O)[C@]1([H])[C@@]3(C)C[C@@H](O)C[C@@]21OC3=O	2528.8	Standard non polar	33892256
Gibberellin A51	[H][C@@]12CC[C@@H]3C[C@]1(CC3=C)[C@@H](C(O)=O)[C@]1([H])[C@@]3(C)C[C@@H](O)C[C@@]21OC3=O	2911.1	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
Gibberellin A51,1TMS,isomer #1	C=C1C[C@]23C[C@H]1CC[C@H]2[C@@]12C[C@H](O)C[C@@](C)(C(=O)O1)[C@H]2[C@@H]3C(=O)O[Si](C)(C)C	2593.1	Semi standard non polar	33892256
Gibberellin A51,1TMS,isomer #2	C=C1C[C@]23C[C@H]1CC[C@H]2[C@@]12C[C@H](O[Si](C)(C)C)C[C@@](C)(C(=O)O1)[C@H]2[C@@H]3C(=O)O	2616.1	Semi standard non polar	33892256
Gibberellin A51,2TMS,isomer #1	C=C1C[C@]23C[C@H]1CC[C@H]2[C@@]12C[C@H](O[Si](C)(C)C)C[C@@](C)(C(=O)O1)[C@H]2[C@@H]3C(=O)O[Si](C)(C)C	2615.1	Semi standard non polar	33892256
Gibberellin A51,1TBDMS,isomer #1	C=C1C[C@]23C[C@H]1CC[C@H]2[C@@]12C[C@H](O)C[C@@](C)(C(=O)O1)[C@H]2[C@@H]3C(=O)O[Si](C)(C)C(C)(C)C	2836.7	Semi standard non polar	33892256
Gibberellin A51,1TBDMS,isomer #2	C=C1C[C@]23C[C@H]1CC[C@H]2[C@@]12C[C@H](O[Si](C)(C)C(C)(C)C)C[C@@](C)(C(=O)O1)[C@H]2[C@@H]3C(=O)O	2835.0	Semi standard non polar	33892256
Gibberellin A51,2TBDMS,isomer #1	C=C1C[C@]23C[C@H]1CC[C@H]2[C@@]12C[C@H](O[Si](C)(C)C(C)(C)C)C[C@@](C)(C(=O)O1)[C@H]2[C@@H]3C(=O)O[Si](C)(C)C(C)(C)C	3075.6	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - Gibberellin A51 GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Gibberellin A51 10V, Positive-QTOF	splash10-001i-0019000000-4067663ae0bd9ce1c71f	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Gibberellin A51 20V, Positive-QTOF	splash10-0019-0293000000-49ad03fb087254037a44	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Gibberellin A51 40V, Positive-QTOF	splash10-010u-5986000000-5178b6311879d1b6105b	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Gibberellin A51 10V, Negative-QTOF	splash10-001i-0009000000-b4a4a71de6294c6ea1f1	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Gibberellin A51 20V, Negative-QTOF	splash10-001i-0009000000-b4a4a71de6294c6ea1f1	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Gibberellin A51 40V, Negative-QTOF	splash10-0059-3901000000-f035f369f27eb31a499b	2021-09-22	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Cytoplasm
Extracellular
Membrane

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

KNApSAcK ID

Chemspider ID

KEGG Compound ID

BioCyc ID

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

5281985

PDB ID

Not Available

ChEBI ID

29599

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
(). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.

Showing metabocard for Gibberellin A51 (HMDB0035041)

MOL for HMDB0035041 (Gibberellin A51)

3D MOL for HMDB0035041 (Gibberellin A51)

3D SDF for HMDB0035041 (Gibberellin A51)

3D-SDF for HMDB0035041 (Gibberellin A51)

PDB for HMDB0035041 (Gibberellin A51)

3D PDB for HMDB0035041 (Gibberellin A51)

SMILES for HMDB0035041 (Gibberellin A51)

INCHI for HMDB0035041 (Gibberellin A51)

Structure for HMDB0035041 (Gibberellin A51)

3D Structure for HMDB0035041 (Gibberellin A51)

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra

MS/MS Spectra