Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 21:57:15 UTC
Update Date2022-03-07 02:55:03 UTC
HMDB IDHMDB0036779
Secondary Accession Numbers
  • HMDB36779
Metabolite Identification
Common NameDiosbulbin E
Description6-Hexyltetrahydro-2H-pyran-2-one, also known as 1,5-undecanolactone or 5-hydroxyundecanoic acid lactone, 8CI, belongs to the class of organic compounds known as delta valerolactones. These are cyclic organic compounds containing an oxan-2- one moiety. 6-Hexyltetrahydro-2H-pyran-2-one is an extremely weak basic (essentially neutral) compound (based on its pKa). 6-Hexyltetrahydro-2H-pyran-2-one is a coconut, creamy, and fatty tasting compound. Outside of the human body,.
Structure
Data?1563862925
Synonyms
ValueSource
1,5-UndecanolactoneHMDB
5-Hydroxyundecanoic acid lactone, 8ciHMDB
FEMA 3294HMDB
Diosbulbin-eHMDB
Chemical FormulaC19H22O6
Average Molecular Weight346.3744
Monoisotopic Molecular Weight346.141638436
IUPAC Name8-(furan-3-yl)-3-hydroxy-10-methyl-7,14-dioxatetracyclo[11.2.1.0²,¹¹.0⁵,¹⁰]hexadecane-6,15-dione
Traditional Name8-(furan-3-yl)-3-hydroxy-10-methyl-7,14-dioxatetracyclo[11.2.1.0²,¹¹.0⁵,¹⁰]hexadecane-6,15-dione
CAS Registry Number67567-14-0
SMILES
CC12CC(OC(=O)C1CC(O)C1C3CC(CC21)OC3=O)C1=COC=C1
InChI Identifier
InChI=1S/C19H22O6/c1-19-7-15(9-2-3-23-8-9)25-18(22)13(19)6-14(20)16-11-4-10(5-12(16)19)24-17(11)21/h2-3,8,10-16,20H,4-7H2,1H3
InChI KeyOEIFXOHVCYVTGK-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as delta valerolactones. These are cyclic organic compounds containing an oxan-2- one moiety.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassLactones
Sub ClassDelta valerolactones
Direct ParentDelta valerolactones
Alternative Parents
Substituents
  • Delta_valerolactone
  • Delta valerolactone
  • Oxane
  • Carboxylic acid ester
  • Oxacycle
  • Monocarboxylic acid or derivatives
  • Carboxylic acid derivative
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Carbonyl group
  • Aliphatic heteromonocyclic compound
Molecular FrameworkAliphatic heteromonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Process
Role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point235 - 237 °CNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.3 g/LALOGPS
logP1.57ALOGPS
logP1.27ChemAxon
logS-3.1ALOGPS
pKa (Strongest Acidic)14.88ChemAxon
pKa (Strongest Basic)-2.9ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area85.97 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity85.21 m³·mol⁻¹ChemAxon
Polarizability35.2 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+180.74631661259
DarkChem[M-H]-177.4631661259
DeepCCS[M-2H]-214.26930932474
DeepCCS[M+Na]+189.79430932474
AllCCS[M+H]+183.132859911
AllCCS[M+H-H2O]+180.132859911
AllCCS[M+NH4]+185.832859911
AllCCS[M+Na]+186.632859911
AllCCS[M-H]-186.232859911
AllCCS[M+Na-2H]-186.032859911
AllCCS[M+HCOO]-185.832859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Diosbulbin ECC12CC(OC(=O)C1CC(O)C1C3CC(CC21)OC3=O)C1=COC=C13740.1Standard polar33892256
Diosbulbin ECC12CC(OC(=O)C1CC(O)C1C3CC(CC21)OC3=O)C1=COC=C12728.5Standard non polar33892256
Diosbulbin ECC12CC(OC(=O)C1CC(O)C1C3CC(CC21)OC3=O)C1=COC=C13336.0Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Diosbulbin E,1TMS,isomer #1CC12CC(C3=COC=C3)OC(=O)C1CC(O[Si](C)(C)C)C1C3CC(CC12)OC3=O3105.9Semi standard non polar33892256
Diosbulbin E,1TBDMS,isomer #1CC12CC(C3=COC=C3)OC(=O)C1CC(O[Si](C)(C)C(C)(C)C)C1C3CC(CC12)OC3=O3352.9Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Diosbulbin E GC-MS (Non-derivatized) - 70eV, Positivesplash10-11vj-2397000000-6c8b0fa5d547b97270b42017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Diosbulbin E GC-MS (1 TMS) - 70eV, Positivesplash10-00e9-3049000000-4a86c80c14361645df782017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Diosbulbin E GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Diosbulbin E 10V, Positive-QTOFsplash10-002b-0019000000-c0a0d553848729345e322016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Diosbulbin E 20V, Positive-QTOFsplash10-005a-2169000000-3b9f1e8b1c919a611de02016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Diosbulbin E 40V, Positive-QTOFsplash10-00dj-4972000000-25b3f71d352f164159cc2016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Diosbulbin E 10V, Negative-QTOFsplash10-0f6t-0019000000-dce92c1ea641ebdf780c2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Diosbulbin E 20V, Negative-QTOFsplash10-0f6t-1039000000-8a4800175181e1372abc2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Diosbulbin E 40V, Negative-QTOFsplash10-066r-2091000000-204962e55551127160622016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Diosbulbin E 10V, Negative-QTOFsplash10-0002-0009000000-c3b51449574c3fb8238f2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Diosbulbin E 20V, Negative-QTOFsplash10-00kb-1009000000-fbea152ff669710887b52021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Diosbulbin E 40V, Negative-QTOFsplash10-014l-9088000000-f787a8fde2c0a6b132aa2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Diosbulbin E 10V, Positive-QTOFsplash10-0002-0029000000-7a849bfa0f4135c533732021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Diosbulbin E 20V, Positive-QTOFsplash10-0kbb-0096000000-4310ed1cf8ebb405c2362021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Diosbulbin E 40V, Positive-QTOFsplash10-0fr6-5498000000-fffe6b52a59ab11560bd2021-09-22Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB015726
KNApSAcK IDNot Available
Chemspider ID55148
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound61204
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .