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Record Information

Version

5.0

Status

Expected but not Quantified

Creation Date

2012-09-11 22:05:47 UTC

Update Date

2022-03-07 02:55:07 UTC

HMDB ID

HMDB0036912

Secondary Accession Numbers

HMDB36912

Metabolite Identification

Common Name

Salmoxanthin

Description

Salmoxanthin belongs to the class of organic compounds known as xanthophylls. These are carotenoids containing an oxygenated carotene backbone. Carotenes are characterized by the presence of two end-groups (mostly cyclohexene rings, but also cyclopentene rings or acyclic groups) linked by a long branched alkyl chain. Carotenes belonging form a subgroup of the carotenoids family. Xanthophylls arise by oxygenation of the carotene backbone. Based on a literature review a small amount of articles have been published on Salmoxanthin.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

  Mrv0541 05061309242D          

 44 46  0  0  0  0            999 V2000
   -6.4086    2.9684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2836    1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  -10.1211    1.1933    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6737   -0.2195    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6131   -0.2195    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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 43 39  1  0  0  0  0
 44 38  1  0  0  0  0
 44 40  1  0  0  0  0
M  END

HMDB0036912
     RDKit          3D
Salmoxanthin
100102  0  0  0  0  0  0  0  0999 V2000
   11.6382    2.0598    1.5478 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

  Mrv0541 05061309242D          

 44 46  0  0  0  0            999 V2000
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   -2.2836    1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  -10.1211    1.1933    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6737   -0.2195    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6131   -0.2195    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0164    2.3645    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7586    1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.4586    0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1711    2.2539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5211    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4086    1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2836    0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6461    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0461   -0.6039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.8836    1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1914    0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.7086    1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0164    0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.0396    3.3486    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.5283    2.0058    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9961    2.2539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6961    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4711    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2211   -0.6039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2643    3.0664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.6716    2.8183    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.7530    1.7236    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.1211    2.2539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.4468    3.1004    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.3458    2.5361    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 12 11  2  0  0  0  0
 15 11  1  0  0  0  0
 16 12  1  0  0  0  0
 17 13  2  0  0  0  0
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 23 21  2  0  0  0  0
 24 22  2  0  0  0  0
 29  1  1  0  0  0  0
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 31  3  1  0  0  0  0
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 31 21  1  0  0  0  0
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 33  5  1  0  0  0  0
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 35 27  1  0  0  0  0
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 36  6  1  0  0  0  0
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 37  9  1  0  0  0  0
 37 27  1  0  0  0  0
 38 10  1  0  0  0  0
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 39 23  1  0  0  0  0
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 42 35  1  0  0  0  0
 43 39  1  0  0  0  0
 44 38  1  0  0  0  0
 44 40  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0036912

> <DATABASE_NAME>
hmdb

> <SMILES>
C/C(/C=C/C=C(/C)\C=C\C12OC1(C)CC(O)CC2(C)C)=C\C=C\C=C(\C)/C=C/C=C(/C)\C=C\C1(O)C(C)=CC(O)CC1(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C40H56O4/c1-29(17-13-19-31(3)21-23-39(43)33(5)25-34(41)26-36(39,6)7)15-11-12-16-30(2)18-14-20-32(4)22-24-40-37(8,9)27-35(42)28-38(40,10)44-40/h11-25,34-35,41-43H,26-28H2,1-10H3/b12-11+,17-13+,18-14+,23-21+,24-22+,29-15-,30-16+,31-19-,32-20-

> <INCHI_KEY>
SVQBXFMDOMCWNO-IEYSKXRHSA-N

> <FORMULA>
C40H56O4

> <MOLECULAR_WEIGHT>
600.8702

> <EXACT_MASS>
600.41786028

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_AVERAGE_POLARIZABILITY>
74.26774684637101

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
1-[(1E,3Z,5E,7Z,9E,11E,13E,15Z,17E)-18-{4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]heptan-1-yl}-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl]-2,6,6-trimethylcyclohex-2-ene-1,4-diol

> <ALOGPS_LOGP>
7.63

> <JCHEM_LOGP>
7.156133017999999

> <ALOGPS_LOGS>
-5.87

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.704962411108209

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.424747691689642

> <JCHEM_PKA_STRONGEST_BASIC>
-2.7377022034819802

> <JCHEM_POLAR_SURFACE_AREA>
73.22

> <JCHEM_REFRACTIVITY>
194.9716

> <JCHEM_ROTATABLE_BOND_COUNT>
10

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
8.03e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
1-[(1E,3Z,5E,7Z,9E,11E,13E,15Z,17E)-18-{4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]heptan-1-yl}-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl]-2,6,6-trimethylcyclohex-2-ene-1,4-diol

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0036912
     RDKit          3D
Salmoxanthin
100102  0  0  0  0  0  0  0  0999 V2000
   11.6382    2.0598    1.5478 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.4546    0.7499    0.8268 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.3856   -0.1525    0.8796 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.2942   -1.4663    0.2040 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.5757   -1.8538   -0.1693 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.3872   -1.3191   -1.0063 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0499   -0.7483   -0.6113 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3049   -1.7001    0.3156 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2638   -0.5349   -1.8981 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.1925    0.5672    0.0879 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0152    1.6449   -0.8027 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.0851    0.7337    1.0982 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8048    0.6406    0.7549 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7992    0.8091    1.7672 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2068    1.0893    3.1923 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5328    0.7350    1.5287 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0006    0.4748    0.2150 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6670    0.4014    0.0061 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2321    0.1361   -1.3519 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2304   -0.0413   -2.4535 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9495    0.0478   -1.6305 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9478    0.2107   -0.5991 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3577    0.1161   -0.9160 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3789    0.2749    0.1019 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6779    0.2023   -0.0896 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1747   -0.0625   -1.4430 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6364    0.3736    0.9960 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9418    0.3194    0.8850 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8526    0.4962    1.9989 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1409    0.4357    1.8459 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0069    0.6328    3.0664 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7465    0.1909    0.5613 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.0894    0.1425    0.4846 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8356   -0.0980   -0.7551 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.5509    0.6189   -1.9132 O   0  0  0  0  0  0  0  0  0  0  0  0
  -10.6719    1.0602   -1.2157 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.4802    2.4112   -0.5653 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.0468    0.6955   -1.6626 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.6598   -0.2736   -0.6807 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.6318    0.3549    0.5817 O   0  0  0  0  0  0  0  0  0  0  0  0
  -11.8905   -1.5483   -0.5654 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.4579   -1.4410   -1.0136 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.3292   -1.8455   -2.4766 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.6700   -2.4673   -0.2084 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0396    1.8738    2.5705 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.3865    2.7039    1.0401 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.6786    2.5929    1.6741 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.3048    0.0459    1.4532 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.8390   -2.1779    0.9383 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.7316   -2.8297   -0.0282 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.2401   -2.3006   -1.5067 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.8547   -0.6165   -1.7234 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.8800   -2.6502    0.3691 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.2416   -1.3034    1.3400 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.2840   -1.8656   -0.1256 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.3412   -1.1486   -1.8585 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.8385   -0.8965   -2.7993 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.0628    0.5310   -2.1030 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.9017    2.0817   -0.9903 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.3121    0.9323    2.1270 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5328    0.4434   -0.2636 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3384    1.2594    3.8333 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8378    0.2371    3.5619 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8941    1.9755    3.2209 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8056    0.8731    2.3488 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6650    0.3353   -0.6192 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0542    0.5459    0.8607 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9648    0.7911   -2.4789 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6741   -0.0154   -3.4076 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6970   -1.0391   -2.3678 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6653   -0.1554   -2.6755 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1378    0.4052    0.4242 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5895   -0.0781   -1.9516 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0729    0.4742    1.1342 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4873   -0.6229   -2.1039 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5436    0.8699   -1.8711 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0753   -0.7426   -1.3665 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2351    0.5650    1.9955 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3356    0.1360   -0.0937 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3990    0.6876    3.0029 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.6704    1.4816    2.8748 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5397   -0.3241    3.2202 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3992    0.8420    3.9437 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2562    0.0371   -0.3750 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.6435    0.2906    1.3982 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.4879    2.8778   -0.4360 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9741    2.3819    0.4002 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9203    3.1212   -1.2217 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.1133    0.3647   -2.7096 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.6884    1.6238   -1.6072 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.7095   -0.4840   -0.9021 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.1378    1.2079    0.5470 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.9192   -1.9138    0.4905 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.3990   -2.3279   -1.1909 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.2645   -2.2892   -2.8592 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.5414   -2.6304   -2.6170 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9806   -0.9657   -3.0474 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2776   -3.4162   -0.2816 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7131   -2.6481   -0.6946 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.6190   -2.2202    0.8612 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  4  6  1  0
  6  7  1  0
  7  8  1  0
  7  9  1  0
  7 10  1  0
 10 11  1  0
 10 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  1  0
 14 16  2  0
 16 17  1  0
 17 18  2  0
 18 19  1  0
 19 20  1  0
 19 21  2  0
 21 22  1  0
 22 23  2  0
 23 24  1  0
 24 25  2  0
 25 26  1  0
 25 27  1  0
 27 28  2  0
 28 29  1  0
 29 30  2  0
 30 31  1  0
 30 32  1  0
 32 33  2  0
 33 34  1  0
 34 35  1  0
 35 36  1  0
 36 37  1  0
 36 38  1  0
 38 39  1  0
 39 40  1  0
 39 41  1  0
 41 42  1  0
 42 43  1  0
 42 44  1  0
 10  2  1  0
 36 34  1  0
 42 34  1  0
  1 45  1  0
  1 46  1  0
  1 47  1  0
  3 48  1  0
  4 49  1  0
  5 50  1  0
  6 51  1  0
  6 52  1  0
  8 53  1  0
  8 54  1  0
  8 55  1  0
  9 56  1  0
  9 57  1  0
  9 58  1  0
 11 59  1  0
 12 60  1  0
 13 61  1  0
 15 62  1  0
 15 63  1  0
 15 64  1  0
 16 65  1  0
 17 66  1  0
 18 67  1  0
 20 68  1  0
 20 69  1  0
 20 70  1  0
 21 71  1  0
 22 72  1  0
 23 73  1  0
 24 74  1  0
 26 75  1  0
 26 76  1  0
 26 77  1  0
 27 78  1  0
 28 79  1  0
 29 80  1  0
 31 81  1  0
 31 82  1  0
 31 83  1  0
 32 84  1  0
 33 85  1  0
 37 86  1  0
 37 87  1  0
 37 88  1  0
 38 89  1  0
 38 90  1  0
 39 91  1  0
 40 92  1  0
 41 93  1  0
 41 94  1  0
 43 95  1  0
 43 96  1  0
 43 97  1  0
 44 98  1  0
 44 99  1  0
 44100  1  0
M  END

HEADER    PROTEIN                                 06-MAY-13   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-MAY-13         0                                  
HETATM    1  C   UNK     0     -11.963   5.541   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -4.263   2.874   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0     -16.583   0.206   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.357  -2.461   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0     -17.980   6.714   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0     -20.842   1.884   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0     -18.893   2.227   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.991  -0.410   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       3.011  -0.410   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.897   4.414   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -8.883   2.874   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -7.343   2.874   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0     -13.503   2.874   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -2.723   0.206   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -9.653   4.207   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -6.573   1.540   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0     -11.963   2.874   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -4.263   0.206   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0     -14.273   1.540   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -1.953  -1.127   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0     -16.583   2.874   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       0.357   0.206   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0     -18.123   2.874   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       1.897   0.206   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0     -20.607   6.251   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0     -21.519   3.744   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       5.335   1.540   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       4.001   3.850   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0     -11.193   4.207   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      -5.033   1.540   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0     -15.813   1.540   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      -0.413  -1.127   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0     -19.160   5.724   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0     -21.787   5.261   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       5.335   3.080   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0     -20.072   3.217   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       4.001   0.770   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0       2.667   3.080   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0     -18.893   4.207   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM   41  O   UNK     0     -23.234   5.787   0.000  0.00  0.00           O+0
HETATM   42  O   UNK     0       6.668   3.850   0.000  0.00  0.00           O+0
HETATM   43  O   UNK     0     -17.445   4.734   0.000  0.00  0.00           O+0
HETATM   44  O   UNK     0       1.334   2.310   0.000  0.00  0.00           O+0
CONECT    1   29                                                            
CONECT    2   30                                                            
CONECT    3   31                                                            
CONECT    4   32                                                            
CONECT    5   33                                                            
CONECT    6   36                                                            
CONECT    7   36                                                            
CONECT    8   37                                                            
CONECT    9   37                                                            
CONECT   10   38                                                            
CONECT   11   12   15                                                       
CONECT   12   11   16                                                       
CONECT   13   17   19                                                       
CONECT   14   18   20                                                       
CONECT   15   11   29                                                       
CONECT   16   12   30                                                       
CONECT   17   13   29                                                       
CONECT   18   14   30                                                       
CONECT   19   13   31                                                       
CONECT   20   14   32                                                       
CONECT   21   23   31                                                       
CONECT   22   24   32                                                       
CONECT   23   21   39                                                       
CONECT   24   22   40                                                       
CONECT   25   33   34                                                       
CONECT   26   34   36                                                       
CONECT   27   35   37                                                       
CONECT   28   35   38                                                       
CONECT   29    1   15   17                                                  
CONECT   30    2   16   18                                                  
CONECT   31    3   19   21                                                  
CONECT   32    4   20   22                                                  
CONECT   33    5   25   39                                                  
CONECT   34   25   26   41                                                  
CONECT   35   27   28   42                                                  
CONECT   36    6    7   26   39                                             
CONECT   37    8    9   27   40                                             
CONECT   38   10   28   40   44                                             
CONECT   39   23   33   36   43                                             
CONECT   40   24   37   38   44                                             
CONECT   41   34                                                            
CONECT   42   35                                                            
CONECT   43   39                                                            
CONECT   44   38   40                                                       
MASTER        0    0    0    0    0    0    0    0   44    0   92    0
END

COMPND    HMDB0036912
HETATM    1  C1  UNL     1      11.638   2.060   1.548  1.00  0.00           C  
HETATM    2  C2  UNL     1      11.455   0.750   0.827  1.00  0.00           C  
HETATM    3  C3  UNL     1      12.386  -0.152   0.880  1.00  0.00           C  
HETATM    4  C4  UNL     1      12.294  -1.466   0.204  1.00  0.00           C  
HETATM    5  O1  UNL     1      13.576  -1.854  -0.169  1.00  0.00           O  
HETATM    6  C5  UNL     1      11.387  -1.319  -1.006  1.00  0.00           C  
HETATM    7  C6  UNL     1      10.050  -0.748  -0.611  1.00  0.00           C  
HETATM    8  C7  UNL     1       9.305  -1.700   0.316  1.00  0.00           C  
HETATM    9  C8  UNL     1       9.264  -0.535  -1.898  1.00  0.00           C  
HETATM   10  C9  UNL     1      10.193   0.567   0.088  1.00  0.00           C  
HETATM   11  O2  UNL     1      10.015   1.645  -0.803  1.00  0.00           O  
HETATM   12  C10 UNL     1       9.085   0.734   1.098  1.00  0.00           C  
HETATM   13  C11 UNL     1       7.805   0.641   0.755  1.00  0.00           C  
HETATM   14  C12 UNL     1       6.799   0.809   1.767  1.00  0.00           C  
HETATM   15  C13 UNL     1       7.207   1.089   3.192  1.00  0.00           C  
HETATM   16  C14 UNL     1       5.533   0.735   1.529  1.00  0.00           C  
HETATM   17  C15 UNL     1       5.001   0.475   0.215  1.00  0.00           C  
HETATM   18  C16 UNL     1       3.667   0.401   0.006  1.00  0.00           C  
HETATM   19  C17 UNL     1       3.232   0.136  -1.352  1.00  0.00           C  
HETATM   20  C18 UNL     1       4.230  -0.041  -2.454  1.00  0.00           C  
HETATM   21  C19 UNL     1       1.950   0.048  -1.630  1.00  0.00           C  
HETATM   22  C20 UNL     1       0.948   0.211  -0.599  1.00  0.00           C  
HETATM   23  C21 UNL     1      -0.358   0.116  -0.916  1.00  0.00           C  
HETATM   24  C22 UNL     1      -1.379   0.275   0.102  1.00  0.00           C  
HETATM   25  C23 UNL     1      -2.678   0.202  -0.090  1.00  0.00           C  
HETATM   26  C24 UNL     1      -3.175  -0.063  -1.443  1.00  0.00           C  
HETATM   27  C25 UNL     1      -3.636   0.374   0.996  1.00  0.00           C  
HETATM   28  C26 UNL     1      -4.942   0.319   0.885  1.00  0.00           C  
HETATM   29  C27 UNL     1      -5.853   0.496   1.999  1.00  0.00           C  
HETATM   30  C28 UNL     1      -7.141   0.436   1.846  1.00  0.00           C  
HETATM   31  C29 UNL     1      -8.007   0.633   3.066  1.00  0.00           C  
HETATM   32  C30 UNL     1      -7.746   0.191   0.561  1.00  0.00           C  
HETATM   33  C31 UNL     1      -9.089   0.142   0.485  1.00  0.00           C  
HETATM   34  C32 UNL     1      -9.836  -0.098  -0.755  1.00  0.00           C  
HETATM   35  O3  UNL     1      -9.551   0.619  -1.913  1.00  0.00           O  
HETATM   36  C33 UNL     1     -10.672   1.060  -1.216  1.00  0.00           C  
HETATM   37  C34 UNL     1     -10.480   2.411  -0.565  1.00  0.00           C  
HETATM   38  C35 UNL     1     -12.047   0.695  -1.663  1.00  0.00           C  
HETATM   39  C36 UNL     1     -12.660  -0.274  -0.681  1.00  0.00           C  
HETATM   40  O4  UNL     1     -12.632   0.355   0.582  1.00  0.00           O  
HETATM   41  C37 UNL     1     -11.891  -1.548  -0.565  1.00  0.00           C  
HETATM   42  C38 UNL     1     -10.458  -1.441  -1.014  1.00  0.00           C  
HETATM   43  C39 UNL     1     -10.329  -1.845  -2.477  1.00  0.00           C  
HETATM   44  C40 UNL     1      -9.670  -2.467  -0.208  1.00  0.00           C  
HETATM   45  H1  UNL     1      12.040   1.874   2.570  1.00  0.00           H  
HETATM   46  H2  UNL     1      12.387   2.704   1.040  1.00  0.00           H  
HETATM   47  H3  UNL     1      10.679   2.593   1.674  1.00  0.00           H  
HETATM   48  H4  UNL     1      13.305   0.046   1.453  1.00  0.00           H  
HETATM   49  H5  UNL     1      11.839  -2.178   0.938  1.00  0.00           H  
HETATM   50  H6  UNL     1      13.732  -2.830  -0.028  1.00  0.00           H  
HETATM   51  H7  UNL     1      11.240  -2.301  -1.507  1.00  0.00           H  
HETATM   52  H8  UNL     1      11.855  -0.617  -1.723  1.00  0.00           H  
HETATM   53  H9  UNL     1       9.880  -2.650   0.369  1.00  0.00           H  
HETATM   54  H10 UNL     1       9.242  -1.303   1.340  1.00  0.00           H  
HETATM   55  H11 UNL     1       8.284  -1.866  -0.126  1.00  0.00           H  
HETATM   56  H12 UNL     1       8.341  -1.149  -1.858  1.00  0.00           H  
HETATM   57  H13 UNL     1       9.839  -0.896  -2.799  1.00  0.00           H  
HETATM   58  H14 UNL     1       9.063   0.531  -2.103  1.00  0.00           H  
HETATM   59  H15 UNL     1      10.902   2.082  -0.990  1.00  0.00           H  
HETATM   60  H16 UNL     1       9.312   0.932   2.127  1.00  0.00           H  
HETATM   61  H17 UNL     1       7.533   0.443  -0.264  1.00  0.00           H  
HETATM   62  H18 UNL     1       6.338   1.259   3.833  1.00  0.00           H  
HETATM   63  H19 UNL     1       7.838   0.237   3.562  1.00  0.00           H  
HETATM   64  H20 UNL     1       7.894   1.975   3.221  1.00  0.00           H  
HETATM   65  H21 UNL     1       4.806   0.873   2.349  1.00  0.00           H  
HETATM   66  H22 UNL     1       5.665   0.335  -0.619  1.00  0.00           H  
HETATM   67  H23 UNL     1       3.054   0.546   0.861  1.00  0.00           H  
HETATM   68  H24 UNL     1       4.965   0.791  -2.479  1.00  0.00           H  
HETATM   69  H25 UNL     1       3.674  -0.015  -3.408  1.00  0.00           H  
HETATM   70  H26 UNL     1       4.697  -1.039  -2.368  1.00  0.00           H  
HETATM   71  H27 UNL     1       1.665  -0.155  -2.676  1.00  0.00           H  
HETATM   72  H28 UNL     1       1.138   0.405   0.424  1.00  0.00           H  
HETATM   73  H29 UNL     1      -0.590  -0.078  -1.952  1.00  0.00           H  
HETATM   74  H30 UNL     1      -1.073   0.474   1.134  1.00  0.00           H  
HETATM   75  H31 UNL     1      -2.487  -0.623  -2.104  1.00  0.00           H  
HETATM   76  H32 UNL     1      -3.544   0.870  -1.871  1.00  0.00           H  
HETATM   77  H33 UNL     1      -4.075  -0.743  -1.366  1.00  0.00           H  
HETATM   78  H34 UNL     1      -3.235   0.565   1.995  1.00  0.00           H  
HETATM   79  H35 UNL     1      -5.336   0.136  -0.094  1.00  0.00           H  
HETATM   80  H36 UNL     1      -5.399   0.688   3.003  1.00  0.00           H  
HETATM   81  H37 UNL     1      -8.670   1.482   2.875  1.00  0.00           H  
HETATM   82  H38 UNL     1      -8.540  -0.324   3.220  1.00  0.00           H  
HETATM   83  H39 UNL     1      -7.399   0.842   3.944  1.00  0.00           H  
HETATM   84  H40 UNL     1      -7.256   0.037  -0.375  1.00  0.00           H  
HETATM   85  H41 UNL     1      -9.643   0.291   1.398  1.00  0.00           H  
HETATM   86  H42 UNL     1     -11.488   2.878  -0.436  1.00  0.00           H  
HETATM   87  H43 UNL     1      -9.974   2.382   0.400  1.00  0.00           H  
HETATM   88  H44 UNL     1      -9.920   3.121  -1.222  1.00  0.00           H  
HETATM   89  H45 UNL     1     -12.113   0.365  -2.710  1.00  0.00           H  
HETATM   90  H46 UNL     1     -12.688   1.624  -1.607  1.00  0.00           H  
HETATM   91  H47 UNL     1     -13.710  -0.484  -0.902  1.00  0.00           H  
HETATM   92  H48 UNL     1     -13.138   1.208   0.547  1.00  0.00           H  
HETATM   93  H49 UNL     1     -11.919  -1.914   0.491  1.00  0.00           H  
HETATM   94  H50 UNL     1     -12.399  -2.328  -1.191  1.00  0.00           H  
HETATM   95  H51 UNL     1     -11.265  -2.289  -2.859  1.00  0.00           H  
HETATM   96  H52 UNL     1      -9.541  -2.630  -2.617  1.00  0.00           H  
HETATM   97  H53 UNL     1      -9.981  -0.966  -3.047  1.00  0.00           H  
HETATM   98  H54 UNL     1     -10.278  -3.416  -0.282  1.00  0.00           H  
HETATM   99  H55 UNL     1      -8.713  -2.648  -0.695  1.00  0.00           H  
HETATM  100  H56 UNL     1      -9.619  -2.220   0.861  1.00  0.00           H  
CONECT    1    2   45   46   47
CONECT    2    3    3   10
CONECT    3    4   48
CONECT    4    5    6   49
CONECT    5   50
CONECT    6    7   51   52
CONECT    7    8    9   10
CONECT    8   53   54   55
CONECT    9   56   57   58
CONECT   10   11   12
CONECT   11   59
CONECT   12   13   13   60
CONECT   13   14   61
CONECT   14   15   16   16
CONECT   15   62   63   64
CONECT   16   17   65
CONECT   17   18   18   66
CONECT   18   19   67
CONECT   19   20   21   21
CONECT   20   68   69   70
CONECT   21   22   71
CONECT   22   23   23   72
CONECT   23   24   73
CONECT   24   25   25   74
CONECT   25   26   27
CONECT   26   75   76   77
CONECT   27   28   28   78
CONECT   28   29   79
CONECT   29   30   30   80
CONECT   30   31   32
CONECT   31   81   82   83
CONECT   32   33   33   84
CONECT   33   34   85
CONECT   34   35   36   42
CONECT   35   36
CONECT   36   37   38
CONECT   37   86   87   88
CONECT   38   39   89   90
CONECT   39   40   41   91
CONECT   40   92
CONECT   41   42   93   94
CONECT   42   43   44
CONECT   43   95   96   97
CONECT   44   98   99  100
END

HMDB0036912
     RDKit          3D
Salmoxanthin
100102  0  0  0  0  0  0  0  0999 V2000
   11.6382    2.0598    1.5478 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.4546    0.7499    0.8268 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.3856   -0.1525    0.8796 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.2942   -1.4663    0.2040 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.5757   -1.8538   -0.1693 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.3872   -1.3191   -1.0063 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0499   -0.7483   -0.6113 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3049   -1.7001    0.3156 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2638   -0.5349   -1.8981 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.1925    0.5672    0.0879 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0152    1.6449   -0.8027 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.0851    0.7337    1.0982 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8048    0.6406    0.7549 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7992    0.8091    1.7672 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2068    1.0893    3.1923 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5328    0.7350    1.5287 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0006    0.4748    0.2150 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6670    0.4014    0.0061 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2321    0.1361   -1.3519 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2304   -0.0413   -2.4535 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9495    0.0478   -1.6305 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9478    0.2107   -0.5991 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.3789    0.2749    0.1019 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6779    0.2023   -0.0896 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1747   -0.0625   -1.4430 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6364    0.3736    0.9960 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9418    0.3194    0.8850 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8526    0.4962    1.9989 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1409    0.4357    1.8459 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -7.7465    0.1909    0.5613 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.0894    0.1425    0.4846 C   0  0  0  0  0  0  0  0  0  0  0  0
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   11.2401   -2.3006   -1.5067 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.8547   -0.6165   -1.7234 H   0  0  0  0  0  0  0  0  0  0  0  0
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   10.9017    2.0817   -0.9903 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.3121    0.9323    2.1270 H   0  0  0  0  0  0  0  0  0  0  0  0
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    6.3384    1.2594    3.8333 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8378    0.2371    3.5619 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8941    1.9755    3.2209 H   0  0  0  0  0  0  0  0  0  0  0  0
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    3.6741   -0.0154   -3.4076 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6970   -1.0391   -2.3678 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6653   -0.1554   -2.6755 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1378    0.4052    0.4242 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5895   -0.0781   -1.9516 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0729    0.4742    1.1342 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4873   -0.6229   -2.1039 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5436    0.8699   -1.8711 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0753   -0.7426   -1.3665 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2351    0.5650    1.9955 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3356    0.1360   -0.0937 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3990    0.6876    3.0029 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.6704    1.4816    2.8748 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5397   -0.3241    3.2202 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3992    0.8420    3.9437 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2562    0.0371   -0.3750 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.6435    0.2906    1.3982 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.4879    2.8778   -0.4360 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9741    2.3819    0.4002 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9203    3.1212   -1.2217 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.1133    0.3647   -2.7096 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.6884    1.6238   -1.6072 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.7095   -0.4840   -0.9021 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.1378    1.2079    0.5470 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.9192   -1.9138    0.4905 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.3990   -2.3279   -1.1909 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.2645   -2.2892   -2.8592 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -9.9806   -0.9657   -3.0474 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2776   -3.4162   -0.2816 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7131   -2.6481   -0.6946 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.6190   -2.2202    0.8612 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
5,6-Epoxy-5,6-dihydro-b,e-carotene-3,3',6'-triol	HMDB

Chemical Formula

C₄₀H₅₆O₄

Average Molecular Weight

600.8702

Monoisotopic Molecular Weight

600.41786028

IUPAC Name

1-[(1E,3Z,5E,7Z,9E,11E,13E,15Z,17E)-18-{4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]heptan-1-yl}-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl]-2,6,6-trimethylcyclohex-2-ene-1,4-diol

Traditional Name

CAS Registry Number

75138-59-9

SMILES

C/C(/C=C/C=C(/C)\C=C\C12OC1(C)CC(O)CC2(C)C)=C\C=C\C=C(\C)/C=C/C=C(/C)\C=C\C1(O)C(C)=CC(O)CC1(C)C

InChI Identifier

InChI=1S/C40H56O4/c1-29(17-13-19-31(3)21-23-39(43)33(5)25-34(41)26-36(39,6)7)15-11-12-16-30(2)18-14-20-32(4)22-24-40-37(8,9)27-35(42)28-38(40,10)44-40/h11-25,34-35,41-43H,26-28H2,1-10H3/b12-11+,17-13+,18-14+,23-21+,24-22+,29-15-,30-16+,31-19-,32-20-

InChI Key

SVQBXFMDOMCWNO-IEYSKXRHSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as xanthophylls. These are carotenoids containing an oxygenated carotene backbone. Carotenes are characterized by the presence of two end-groups (mostly cyclohexene rings, but also cyclopentene rings or acyclic groups) linked by a long branched alkyl chain. Carotenes belonging form a subgroup of the carotenoids family. Xanthophylls arise by oxygenation of the carotene backbone.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Tetraterpenoids

Direct Parent

Xanthophylls

Alternative Parents

Substituents

Xanthophyll
Oxepane
Tertiary alcohol
Cyclic alcohol
Secondary alcohol
Oxacycle
Organoheterocyclic compound
Ether
Oxirane
Dialkyl ether
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Cellular substructure

Route of exposure

Enteral

Ingestion (HMDB: HMDB0036912)

Source

Endogenous

Endogenous (HMDB: HMDB0036912)

Animal

Animal (HMDB: HMDB0036912)

Exogenous

Food

Food (HMDB: HMDB0036912)

Aquatic origin

Fish

Fishes (FooDB: FOOD00865)

Exogenous (HMDB: HMDB0036912)

Process

Naturally occurring process

Biological process

Chemical reaction

Lipid Peroxidation (HMDB: HMDB0036912)

Biochemical pathway

Metabolic pathway

Fatty Acid Metabolism (HMDB: HMDB0036912)

Lipid metabolism pathway (HMDB: HMDB0036912)

Cellular process

Cell signaling (HMDB: HMDB0036912)

Biochemical process

Lipid transport (HMDB: HMDB0036912)

Role

Biological role

Energy source (HMDB: HMDB0036912)

Industrial application

Manufacturing industry

Material processing agent

Solid material processing agent

Protective agent

Antioxidant (HMDB: HMDB0036912)

Fluid processing agent

Surfactant

Surfactant (HMDB: HMDB0036912)

Physical Properties

State

Solid

Experimental Molecular Properties

Property	Value	Reference
Melting Point	208 °C	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
Water Solubility	0.0008 g/L	ALOGPS
logP	7.63	ALOGPS
logP	7.16	ChemAxon
logS	-5.9	ALOGPS
pKa (Strongest Acidic)	13.42	ChemAxon
pKa (Strongest Basic)	-2.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	73.22 Å²	ChemAxon
Rotatable Bond Count	10	ChemAxon
Refractivity	194.97 m³·mol⁻¹	ChemAxon
Polarizability	74.27 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DarkChem	[M+H]+	249.783	31661259
DarkChem	[M-H]-	244.699	31661259
DeepCCS	[M-2H]-	286.149	30932474
DeepCCS	[M+Na]+	260.338	30932474
AllCCS	[M+H]+	266.0	32859911
AllCCS	[M+H-H2O]+	264.4	32859911
AllCCS	[M+NH4]+	267.4	32859911
AllCCS	[M+Na]+	267.9	32859911
AllCCS	[M-H]-	240.2	32859911
AllCCS	[M+Na-2H]-	244.7	32859911
AllCCS	[M+HCOO]-	249.8	32859911

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
Salmoxanthin	C/C(/C=C/C=C(/C)\C=C\C12OC1(C)CC(O)CC2(C)C)=C\C=C\C=C(\C)/C=C/C=C(/C)\C=C\C1(O)C(C)=CC(O)CC1(C)C	5923.3	Standard polar	33892256
Salmoxanthin	C/C(/C=C/C=C(/C)\C=C\C12OC1(C)CC(O)CC2(C)C)=C\C=C\C=C(\C)/C=C/C=C(/C)\C=C\C1(O)C(C)=CC(O)CC1(C)C	4687.8	Standard non polar	33892256
Salmoxanthin	C/C(/C=C/C=C(/C)\C=C\C12OC1(C)CC(O)CC2(C)C)=C\C=C\C=C(\C)/C=C/C=C(/C)\C=C\C1(O)C(C)=CC(O)CC1(C)C	4621.3	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
Salmoxanthin,1TMS,isomer #1	CC1=CC(O)CC(C)(C)C1(O)/C=C/C(C)=C\C=C\C(C)=C/C=C/C=C(C)/C=C/C=C(C)\C=C\C12OC1(C)CC(O[Si](C)(C)C)CC2(C)C	4787.3	Semi standard non polar	33892256
Salmoxanthin,1TMS,isomer #2	CC1=CC(O)CC(C)(C)C1(/C=C/C(C)=C\C=C\C(C)=C/C=C/C=C(C)/C=C/C=C(C)\C=C\C12OC1(C)CC(O)CC2(C)C)O[Si](C)(C)C	4784.7	Semi standard non polar	33892256
Salmoxanthin,1TMS,isomer #3	CC1=CC(O[Si](C)(C)C)CC(C)(C)C1(O)/C=C/C(C)=C\C=C\C(C)=C/C=C/C=C(C)/C=C/C=C(C)\C=C\C12OC1(C)CC(O)CC2(C)C	4796.4	Semi standard non polar	33892256
Salmoxanthin,2TMS,isomer #1	CC1=CC(O[Si](C)(C)C)CC(C)(C)C1(O)/C=C/C(C)=C\C=C\C(C)=C/C=C/C=C(C)/C=C/C=C(C)\C=C\C12OC1(C)CC(O[Si](C)(C)C)CC2(C)C	4713.9	Semi standard non polar	33892256
Salmoxanthin,2TMS,isomer #2	CC1=CC(O)CC(C)(C)C1(/C=C/C(C)=C\C=C\C(C)=C/C=C/C=C(C)/C=C/C=C(C)\C=C\C12OC1(C)CC(O[Si](C)(C)C)CC2(C)C)O[Si](C)(C)C	4710.5	Semi standard non polar	33892256
Salmoxanthin,2TMS,isomer #3	CC1=CC(O[Si](C)(C)C)CC(C)(C)C1(/C=C/C(C)=C\C=C\C(C)=C/C=C/C=C(C)/C=C/C=C(C)\C=C\C12OC1(C)CC(O)CC2(C)C)O[Si](C)(C)C	4731.5	Semi standard non polar	33892256
Salmoxanthin,3TMS,isomer #1	CC1=CC(O[Si](C)(C)C)CC(C)(C)C1(/C=C/C(C)=C\C=C\C(C)=C/C=C/C=C(C)/C=C/C=C(C)\C=C\C12OC1(C)CC(O[Si](C)(C)C)CC2(C)C)O[Si](C)(C)C	4645.2	Semi standard non polar	33892256
Salmoxanthin,1TBDMS,isomer #1	CC1=CC(O)CC(C)(C)C1(O)/C=C/C(C)=C\C=C\C(C)=C/C=C/C=C(C)/C=C/C=C(C)\C=C\C12OC1(C)CC(O[Si](C)(C)C(C)(C)C)CC2(C)C	5030.2	Semi standard non polar	33892256
Salmoxanthin,1TBDMS,isomer #2	CC1=CC(O)CC(C)(C)C1(/C=C/C(C)=C\C=C\C(C)=C/C=C/C=C(C)/C=C/C=C(C)\C=C\C12OC1(C)CC(O)CC2(C)C)O[Si](C)(C)C(C)(C)C	5008.3	Semi standard non polar	33892256
Salmoxanthin,1TBDMS,isomer #3	CC1=CC(O[Si](C)(C)C(C)(C)C)CC(C)(C)C1(O)/C=C/C(C)=C\C=C\C(C)=C/C=C/C=C(C)/C=C/C=C(C)\C=C\C12OC1(C)CC(O)CC2(C)C	5035.9	Semi standard non polar	33892256
Salmoxanthin,2TBDMS,isomer #1	CC1=CC(O[Si](C)(C)C(C)(C)C)CC(C)(C)C1(O)/C=C/C(C)=C\C=C\C(C)=C/C=C/C=C(C)/C=C/C=C(C)\C=C\C12OC1(C)CC(O[Si](C)(C)C(C)(C)C)CC2(C)C	5198.1	Semi standard non polar	33892256
Salmoxanthin,2TBDMS,isomer #2	CC1=CC(O)CC(C)(C)C1(/C=C/C(C)=C\C=C\C(C)=C/C=C/C=C(C)/C=C/C=C(C)\C=C\C12OC1(C)CC(O[Si](C)(C)C(C)(C)C)CC2(C)C)O[Si](C)(C)C(C)(C)C	5185.7	Semi standard non polar	33892256
Salmoxanthin,2TBDMS,isomer #3	CC1=CC(O[Si](C)(C)C(C)(C)C)CC(C)(C)C1(/C=C/C(C)=C\C=C\C(C)=C/C=C/C=C(C)/C=C/C=C(C)\C=C\C12OC1(C)CC(O)CC2(C)C)O[Si](C)(C)C(C)(C)C	5206.8	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - Salmoxanthin GC-MS (Non-derivatized) - 70eV, Positive	splash10-0540-3100090000-ce30bc8ae2a2b5e28861	2017-09-01	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Salmoxanthin GC-MS (1 TMS) - 70eV, Positive	splash10-0a4i-5300019000-3f85fa17b6d2541e5144	2017-10-06	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Salmoxanthin GC-MS (TMS_1_2) - 70eV, Positive	Not Available	2021-10-16	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Salmoxanthin GC-MS (TMS_1_3) - 70eV, Positive	Not Available	2021-10-16	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Salmoxanthin GC-MS (TMS_2_1) - 70eV, Positive	Not Available	2021-10-16	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Salmoxanthin GC-MS (TMS_2_2) - 70eV, Positive	Not Available	2021-10-16	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Salmoxanthin GC-MS (TMS_2_3) - 70eV, Positive	Not Available	2021-10-16	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Salmoxanthin GC-MS (TMS_3_1) - 70eV, Positive	Not Available	2021-10-16	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Salmoxanthin GC-MS (TBDMS_1_1) - 70eV, Positive	Not Available	2021-10-16	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Salmoxanthin GC-MS (TBDMS_1_2) - 70eV, Positive	Not Available	2021-10-16	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Salmoxanthin GC-MS (TBDMS_1_3) - 70eV, Positive	Not Available	2021-10-16	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Salmoxanthin GC-MS (TBDMS_2_1) - 70eV, Positive	Not Available	2021-10-16	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Salmoxanthin GC-MS (TBDMS_2_2) - 70eV, Positive	Not Available	2021-10-16	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Salmoxanthin GC-MS (TBDMS_2_3) - 70eV, Positive	Not Available	2021-10-16	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Salmoxanthin GC-MS ("Salmoxanthin,1TMS,#1" TMS) - 70eV, Positive	Not Available	2021-10-20	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Salmoxanthin 10V, Positive-QTOF	splash10-001i-0011692000-bee1227e29229d0a0fbd	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Salmoxanthin 20V, Positive-QTOF	splash10-03e9-0044940000-5be78769d4524cb3cade	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Salmoxanthin 40V, Positive-QTOF	splash10-03di-2593210000-9fd96f693c579c5b1190	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Salmoxanthin 10V, Negative-QTOF	splash10-0002-0100090000-71409182ef0801132ce2	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Salmoxanthin 20V, Negative-QTOF	splash10-000t-0100190000-532ad4463b66d38156b1	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Salmoxanthin 40V, Negative-QTOF	splash10-053b-1400490000-831acc637c260773d286	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Salmoxanthin 10V, Negative-QTOF	splash10-0002-0400090000-24c301a1e4256c0c1c69	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Salmoxanthin 20V, Negative-QTOF	splash10-0002-0202290000-e56509125f42b24f37b0	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Salmoxanthin 40V, Negative-QTOF	splash10-000b-0429160000-78f01008931d56b84558	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Salmoxanthin 10V, Positive-QTOF	splash10-00lr-0010191000-3bf98436adf32d19a96a	2021-09-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Salmoxanthin 20V, Positive-QTOF	splash10-0gc0-0043790000-3a34ab456d0c89ef6544	2021-09-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Salmoxanthin 40V, Positive-QTOF	splash10-02c2-2079610000-d1fcf27c7374d710cf17	2021-09-23	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Extracellular
Membrane

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB015876

KNApSAcK ID

C00046367

Chemspider ID

35014310

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

131752088

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
(). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.

Showing metabocard for Salmoxanthin (HMDB0036912)

MOL for HMDB0036912 (Salmoxanthin)

3D MOL for HMDB0036912 (Salmoxanthin)

3D SDF for HMDB0036912 (Salmoxanthin)

3D-SDF for HMDB0036912 (Salmoxanthin)

PDB for HMDB0036912 (Salmoxanthin)

3D PDB for HMDB0036912 (Salmoxanthin)

SMILES for HMDB0036912 (Salmoxanthin)

INCHI for HMDB0036912 (Salmoxanthin)

Structure for HMDB0036912 (Salmoxanthin)

3D Structure for HMDB0036912 (Salmoxanthin)

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra

MS/MS Spectra