Hmdb loader

Showing metabocard for Araliasaponin VI (HMDB0037258)

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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 22:29:52 UTC
Update Date2022-03-07 02:55:15 UTC
HMDB IDHMDB0037258
Secondary Accession Numbers
  • HMDB37258
Metabolite Identification
Common NameAraliasaponin VI
DescriptionAraliasaponin VI belongs to the class of organic compounds known as triterpene saponins. These are glycosylated derivatives of triterpene sapogenins. The sapogenin moiety backbone is usually based on the oleanane, ursane, taraxastane, bauerane, lanostane, lupeol, lupane, dammarane, cycloartane, friedelane, hopane, 9b,19-cyclo-lanostane, cycloartane, or cycloartanol skeleton. Based on a literature review a small amount of articles have been published on Araliasaponin VI.
Structure
Data?1563863001
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0037258 (Araliasaponin VI)


  Mrv0541 05061309402D          

 78 86  0  0  0  0            999 V2000
   10.5558    4.3338    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4952    4.3338    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2690   -1.0551    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2084   -1.0551    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4532    1.6394    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8895    1.6394    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5966    0.4019    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8821    2.4644    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1677    2.0519    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1677   -0.4231    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0243    0.8144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7387    1.2269    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    9.3111    3.2894    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
Download

3D MOL for HMDB0037258 (Araliasaponin VI)

HMDB0037258
     RDKit          3D
Araliasaponin VI
166174  0  0  0  0  0  0  0  0999 V2000
    9.0417    0.8874   -3.3927 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3916    0.8169   -2.0041 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4183    2.2029   -1.4428 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0439   -0.2127   -1.1430 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3331   -1.5349   -1.1323 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9270   -1.4248   -0.5237 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1528   -1.4429    0.9526 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5836   -2.3554    1.6223 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.9250   -0.5509    1.6302 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.0754   -0.6543    3.0280 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5836    0.4322    3.7213 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.3765    1.5457    3.7390 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4004    2.3097    2.4317 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1232    2.7387    2.0996 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.7800    1.3389    4.2151 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.5269    2.4784    3.9375 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.4105    0.1859    3.4669 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.5490   -0.1987    4.2086 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.5018   -0.9977    3.4129 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4339   -1.5875    4.6935 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.1410   -2.6281   -0.8906 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5576   -3.7359   -0.1442 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -6.0253    0.5652    0.6756 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7840   -0.5691    1.4332 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0448   -1.1867    1.6551 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9034   -2.1719    2.6349 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0241   -3.1570    2.4909 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0180   -3.7780    1.2608 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9306   -1.4762    3.9652 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2341   -2.2154    4.9250 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2588   -0.1140    3.8071 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6615    0.2217    5.0129 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1503   -0.2008    2.7489 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5793    1.0896    2.7222 O   0  0  0  0  0  0  0  0  0  0  0  0
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    0.4311   -1.8358   -0.3800 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
Download

3D SDF for HMDB0037258 (Araliasaponin VI)


  Mrv0541 05061309402D          

 78 86  0  0  0  0            999 V2000
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    4.3098   -3.7231    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.8834   -0.4231    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0230   -1.2481    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8808   -2.8981    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.4545    0.4019    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.7400    0.8144    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7374    0.8144    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3098   -1.2481    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.8834    2.0519    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5953    0.8144    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3098   -0.4231    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4519   -0.4231    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8809   -1.2481    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.4545    2.0519    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
> <DATABASE_ID>
HMDB0037258

> <DATABASE_NAME>
hmdb

> <SMILES>
CC1(C)CCC2(C(O)CC3(C)C(=CCC4C5(C)CCC(OC6OC(CO)C(O)C(OC7OC(CO)C(O)C(O)C7O)C6OC6OC(CO)C(O)C(O)C6O)C(C)(C)C5CCC34C)C2C1)C(=O)OC1OC(CO)C(O)C(O)C1O

> <INCHI_IDENTIFIER>
InChI=1S/C54H88O24/c1-49(2)14-15-54(48(70)78-46-41(69)38(66)34(62)26(20-57)73-46)23(16-49)22-8-9-29-51(5)12-11-31(50(3,4)28(51)10-13-52(29,6)53(22,7)17-30(54)59)75-47-43(77-45-40(68)37(65)33(61)25(19-56)72-45)42(35(63)27(21-58)74-47)76-44-39(67)36(64)32(60)24(18-55)71-44/h8,23-47,55-69H,9-21H2,1-7H3

> <INCHI_KEY>
OIMHYZAWACXBBH-UHFFFAOYSA-N

> <FORMULA>
C54H88O24

> <MOLECULAR_WEIGHT>
1121.2621

> <EXACT_MASS>
1120.566553744

> <JCHEM_ACCEPTOR_COUNT>
23

> <JCHEM_AVERAGE_POLARIZABILITY>
117.38758012957987

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
15

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 5-hydroxy-10-{[5-hydroxy-6-(hydroxymethyl)-3,4-bis({[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})oxan-2-yl]oxy}-2,2,6a,6b,9,9,12a-heptamethyl-1,2,3,4,4a,5,6,6a,6b,7,8,8a,9,10,11,12,12a,12b,13,14b-icosahydropicene-4a-carboxylate

> <ALOGPS_LOGP>
0.31

> <JCHEM_LOGP>
-2.216552663999999

> <ALOGPS_LOGS>
-2.73

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
9

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.189308654027315

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.750304034056784

> <JCHEM_PKA_STRONGEST_BASIC>
-3.648397751599263

> <JCHEM_POLAR_SURFACE_AREA>
394.3600000000001

> <JCHEM_REFRACTIVITY>
264.81110000000007

> <JCHEM_ROTATABLE_BOND_COUNT>
13

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.09e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 5-hydroxy-10-{[5-hydroxy-6-(hydroxymethyl)-3,4-bis({[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})oxan-2-yl]oxy}-2,2,6a,6b,9,9,12a-heptamethyl-1,3,4,5,6,7,8,8a,10,11,12,12b,13,14b-tetradecahydropicene-4a-carboxylate

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for HMDB0037258 (Araliasaponin VI)

HMDB0037258
     RDKit          3D
Araliasaponin VI
166174  0  0  0  0  0  0  0  0999 V2000
    9.0417    0.8874   -3.3927 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3916    0.8169   -2.0041 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4183    2.2029   -1.4428 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0439   -0.2127   -1.1430 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3331   -1.5349   -1.1323 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9270   -1.4248   -0.5237 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1528   -1.4429    0.9526 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5836   -2.3554    1.6223 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.9250   -0.5509    1.6302 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.0754   -0.6543    3.0280 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5836    0.4322    3.7213 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.3765    1.5457    3.7390 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4004    2.3097    2.4317 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1232    2.7387    2.0996 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.7800    1.3389    4.2151 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.5269    2.4784    3.9375 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.4105    0.1859    3.4669 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.5490   -0.1987    4.2086 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.5018   -0.9977    3.4129 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4339   -1.5875    4.6935 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.1410   -2.6281   -0.8906 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5576   -3.7359   -0.1442 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6611   -2.5059   -0.8511 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0843   -1.2120   -1.3153 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9957   -1.2046   -2.8265 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8835   -0.0165   -0.9304 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3242    1.1533   -0.6088 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8774    1.4500   -0.5815 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1717    0.3009   -1.3144 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7038    0.4521   -1.4395 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3434    0.2727   -2.9180 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2033    1.8671   -1.1086 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0974    1.8879   -0.3960 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1421    0.9290   -0.8766 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2571    1.1087   -0.0233 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3793    1.5335   -0.6940 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8482    2.7080   -0.1656 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9943    3.1709   -0.8124 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6143    4.5443   -1.3822 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2380    5.4052   -0.3709 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4283    2.3324   -1.9673 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7622    2.6178   -3.1576 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4733    0.8411   -1.6661 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7286    0.4716   -1.2464 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3371   -0.4219   -2.0903 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.4267    0.1604   -2.7267 O   0  0  0  0  0  0  0  0  0  0  0  0
  -10.4727    0.5055   -1.9316 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5750    2.0182   -1.7061 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.7398    2.6841   -2.9089 O   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5270   -0.1414   -0.5979 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9981    0.6820    0.4242 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9095   -1.5143   -0.5580 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.8602   -2.5180   -0.7226 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7637   -1.7123   -1.4887 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2199   -2.5266   -2.5529 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4655    0.4787   -0.5999 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0253    0.5652    0.6756 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7840   -0.5691    1.4332 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0448   -1.1867    1.6551 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9034   -2.1719    2.6349 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0241   -3.1570    2.4909 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0180   -3.7780    1.2608 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9306   -1.4762    3.9652 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2341   -2.2154    4.9250 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2588   -0.1140    3.8071 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6615    0.2217    5.0129 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1503   -0.2008    2.7489 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5793    1.0896    2.7222 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5599   -0.4631   -0.7754 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1691   -1.0835    0.4911 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9746   -1.3357   -1.9184 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0655   -0.4534   -0.5271 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4311   -1.8358   -0.3800 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7574   -2.1298   -0.9993 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6669   -0.9917   -0.7566 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8871   -0.9444    0.7623 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3742   -0.1161   -0.9132 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9565    0.3926   -2.2434 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.8453    1.6384   -3.3654 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.2794    1.1800   -4.1664 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.4461   -0.0925   -3.6688 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9444    2.8703   -2.2117 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8639    2.3452   -0.5175 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.4783    2.5649   -1.3773 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.0544   -0.4138   -1.5845 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.2200    0.2158   -0.1559 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.9599   -2.2420   -0.5527 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.2822   -1.9129   -2.1673 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.4730   -1.5282    3.3662 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8982    2.2546    4.4798 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.9217    1.7808    1.6351 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.0070    3.2344    2.6375 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0752    3.7030    1.9944 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7888    1.1942    5.3023 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.2893    2.6099    4.5464 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.6919    0.5280    2.4527 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.2522    0.4722    4.1952 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.8816   -1.7231    2.6770 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7020   -0.9263    5.3865 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4149   -2.9058   -1.9341 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7657   -4.2090    0.1993 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1766   -3.3243   -1.4229 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3485   -2.6575    0.2047 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3235   -0.2499   -3.2804 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6630   -2.0285   -3.2196 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0069   -1.4179   -3.2198 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    1.9778   -0.3371 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7900    2.3935   -1.2022 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5602    1.5718    0.4449 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6360    0.3967   -2.3468 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7511   -0.6488   -3.3504 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9343    1.0995   -3.4267 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6860    0.4696   -3.1659 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9233    2.3990   -0.4391 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1219    2.4973   -2.0130 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5289    2.9233   -0.5400 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0167    1.7866    0.7178 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5251    1.1921   -1.8750 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1570    1.6415   -1.7995 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8387    3.3536   -0.1287 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4333    4.9838   -1.9636 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7137    4.4196   -2.0522 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2511    5.4659   -0.2677 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5028    2.6238   -2.1731 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6443    1.8296   -3.7213 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1557    0.3489   -2.6094 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6039   -0.6304   -2.9162 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.4158    0.2511   -2.5006 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.4875    2.1852   -1.0699 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.6823    2.3920   -1.2059 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.3764    3.4430   -2.8565 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.6057   -0.2710   -0.3183 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.4684    0.5329    1.2731 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.5234   -1.6336    0.4946 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.7378   -3.2453   -0.0819 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9309   -2.2929   -1.0402 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.1852   -2.6822   -2.5163 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9729   -0.4857   -0.7985 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1434   -1.2948    0.8814 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9196   -2.6520    2.4405 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9878   -2.5998    2.6591 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9255   -3.9104    3.3003 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0876   -3.9539    0.9725 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9676   -1.3285    4.2907 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3685   -3.1727    4.6748 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9781    0.6561    3.4733 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7227    1.2073    5.1126 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4012   -0.9436    3.0383 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2847    1.7797    2.8083 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7244   -0.3382    1.0947 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9153   -1.8612    0.2236 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4116   -1.6114    1.1039 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1707   -1.7842   -2.4937 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6328   -2.1975   -1.5967 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6711   -0.7226   -2.5632 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0101    0.0415    0.4934 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5021   -2.1419    0.7080 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3017   -2.5834   -0.8068 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6198   -2.4461   -2.0357 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1704   -3.0381   -0.4759 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9281   -0.6701    1.0254 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2364   -0.2532    1.2836 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7216   -1.9542    1.2118 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7503    0.6709   -0.1868 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4167    1.3076   -2.5243 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9738   -0.3927   -3.0058 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
Download

PDB for HMDB0037258 (Araliasaponin VI)

HEADER    PROTEIN                                 06-MAY-13   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-MAY-13         0                                  
HETATM    1  C   UNK     0      19.704   8.090   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      17.724   8.090   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      11.702  -1.970   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       9.722  -1.970   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      12.046   3.060   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      14.727   3.060   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      16.047   0.750   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      14.713   4.600   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      13.380   3.830   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      13.380  -0.790   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       9.379   1.520   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      10.712   2.290   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      14.713  -0.020   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      20.048   6.140   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      20.048   4.600   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      17.381   6.140   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      17.381   1.520   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       0.043   3.830   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      10.712  -2.330   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      26.716   3.830   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       5.377   3.830   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      16.047   3.830   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      17.381   4.600   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       0.043   2.290   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       9.379  -3.100   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      25.383   3.060   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       5.378   2.290   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      12.046  -0.020   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      13.380   2.290   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      18.714   2.290   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       9.379  -0.020   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      -1.291   1.520   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       9.379  -4.640   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      25.383   1.520   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       4.044   1.520   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      -1.291  -0.020   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       8.045  -5.410   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      24.049   0.750   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0       0.043  -0.790   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0       6.711  -4.640   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      22.715   1.520   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0       4.044  -0.020   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0       5.377  -0.790   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0       1.376  -0.020   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0       6.711  -3.100   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      22.715   3.060   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0       6.711  -0.020   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      20.048   3.060   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      18.714   6.910   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      10.712  -0.790   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0      12.046   1.520   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0      14.713   1.520   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0      16.047   2.290   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0      18.714   3.830   0.000  0.00  0.00           C+0
HETATM   55  O   UNK     0      -1.291   4.600   0.000  0.00  0.00           O+0
HETATM   56  O   UNK     0      12.046  -3.100   0.000  0.00  0.00           O+0
HETATM   57  O   UNK     0      28.050   3.060   0.000  0.00  0.00           O+0
HETATM   58  O   UNK     0       4.044   4.600   0.000  0.00  0.00           O+0
HETATM   59  O   UNK     0      19.341   0.883   0.000  0.00  0.00           O+0
HETATM   60  O   UNK     0      -2.625   2.290   0.000  0.00  0.00           O+0
HETATM   61  O   UNK     0      10.712  -5.410   0.000  0.00  0.00           O+0
HETATM   62  O   UNK     0      26.716   0.750   0.000  0.00  0.00           O+0
HETATM   63  O   UNK     0       2.710   2.290   0.000  0.00  0.00           O+0
HETATM   64  O   UNK     0      -2.625  -0.790   0.000  0.00  0.00           O+0
HETATM   65  O   UNK     0       8.045  -6.950   0.000  0.00  0.00           O+0
HETATM   66  O   UNK     0      24.049  -0.790   0.000  0.00  0.00           O+0
HETATM   67  O   UNK     0       0.043  -2.330   0.000  0.00  0.00           O+0
HETATM   68  O   UNK     0       5.377  -5.410   0.000  0.00  0.00           O+0
HETATM   69  O   UNK     0      21.382   0.750   0.000  0.00  0.00           O+0
HETATM   70  O   UNK     0      20.048   1.520   0.000  0.00  0.00           O+0
HETATM   71  O   UNK     0       1.376   1.520   0.000  0.00  0.00           O+0
HETATM   72  O   UNK     0       8.045  -2.330   0.000  0.00  0.00           O+0
HETATM   73  O   UNK     0      24.049   3.830   0.000  0.00  0.00           O+0
HETATM   74  O   UNK     0       6.711   1.520   0.000  0.00  0.00           O+0
HETATM   75  O   UNK     0       8.045  -0.790   0.000  0.00  0.00           O+0
HETATM   76  O   UNK     0       2.710  -0.790   0.000  0.00  0.00           O+0
HETATM   77  O   UNK     0       5.378  -2.330   0.000  0.00  0.00           O+0
HETATM   78  O   UNK     0      21.382   3.830   0.000  0.00  0.00           O+0
CONECT    1   49                                                            
CONECT    2   49                                                            
CONECT    3   50                                                            
CONECT    4   50                                                            
CONECT    5   51                                                            
CONECT    6   52                                                            
CONECT    7   53                                                            
CONECT    8    9   22                                                       
CONECT    9    8   29                                                       
CONECT   10   13   28                                                       
CONECT   11   12   31                                                       
CONECT   12   11   51                                                       
CONECT   13   10   52                                                       
CONECT   14   15   49                                                       
CONECT   15   14   54                                                       
CONECT   16   23   49                                                       
CONECT   17   30   53                                                       
CONECT   18   24   55                                                       
CONECT   19   25   56                                                       
CONECT   20   26   57                                                       
CONECT   21   27   58                                                       
CONECT   22    8   23   53                                                  
CONECT   23   16   22   54                                                  
CONECT   24   18   32   71                                                  
CONECT   25   19   33   72                                                  
CONECT   26   20   34   73                                                  
CONECT   27   21   35   74                                                  
CONECT   28   10   50   51                                                  
CONECT   29    9   51   52                                                  
CONECT   30   17   54   59                                                  
CONECT   31   11   50   75                                                  
CONECT   32   24   36   60                                                  
CONECT   33   25   37   61                                                  
CONECT   34   26   38   62                                                  
CONECT   35   27   42   63                                                  
CONECT   36   32   39   64                                                  
CONECT   37   33   40   65                                                  
CONECT   38   34   41   66                                                  
CONECT   39   36   44   67                                                  
CONECT   40   37   45   68                                                  
CONECT   41   38   46   69                                                  
CONECT   42   35   43   76                                                  
CONECT   43   42   47   77                                                  
CONECT   44   39   71   76                                                  
CONECT   45   40   72   77                                                  
CONECT   46   41   73   78                                                  
CONECT   47   43   74   75                                                  
CONECT   48   54   70   78                                                  
CONECT   49    1    2   14   16                                             
CONECT   50    3    4   28   31                                             
CONECT   51    5   12   28   29                                             
CONECT   52    6   13   29   53                                             
CONECT   53    7   17   22   52                                             
CONECT   54   15   23   30   48                                             
CONECT   55   18                                                            
CONECT   56   19                                                            
CONECT   57   20                                                            
CONECT   58   21                                                            
CONECT   59   30                                                            
CONECT   60   32                                                            
CONECT   61   33                                                            
CONECT   62   34                                                            
CONECT   63   35                                                            
CONECT   64   36                                                            
CONECT   65   37                                                            
CONECT   66   38                                                            
CONECT   67   39                                                            
CONECT   68   40                                                            
CONECT   69   41                                                            
CONECT   70   48                                                            
CONECT   71   24   44                                                       
CONECT   72   25   45                                                       
CONECT   73   26   46                                                       
CONECT   74   27   47                                                       
CONECT   75   31   47                                                       
CONECT   76   42   44                                                       
CONECT   77   43   45                                                       
CONECT   78   46   48                                                       
MASTER        0    0    0    0    0    0    0    0   78    0  172    0
END
Download

3D PDB for HMDB0037258 (Araliasaponin VI)

COMPND    HMDB0037258
HETATM    1  C1  UNL     1       9.042   0.887  -3.393  1.00  0.00           C  
HETATM    2  C2  UNL     1       8.392   0.817  -2.004  1.00  0.00           C  
HETATM    3  C3  UNL     1       8.418   2.203  -1.443  1.00  0.00           C  
HETATM    4  C4  UNL     1       9.044  -0.213  -1.143  1.00  0.00           C  
HETATM    5  C5  UNL     1       8.333  -1.535  -1.132  1.00  0.00           C  
HETATM    6  C6  UNL     1       6.927  -1.425  -0.524  1.00  0.00           C  
HETATM    7  C7  UNL     1       7.153  -1.443   0.953  1.00  0.00           C  
HETATM    8  O1  UNL     1       6.584  -2.355   1.622  1.00  0.00           O  
HETATM    9  O2  UNL     1       7.925  -0.551   1.630  1.00  0.00           O  
HETATM   10  C8  UNL     1       8.075  -0.654   3.028  1.00  0.00           C  
HETATM   11  O3  UNL     1       7.584   0.432   3.721  1.00  0.00           O  
HETATM   12  C9  UNL     1       8.377   1.546   3.739  1.00  0.00           C  
HETATM   13  C10 UNL     1       8.400   2.310   2.432  1.00  0.00           C  
HETATM   14  O4  UNL     1       7.123   2.739   2.100  1.00  0.00           O  
HETATM   15  C11 UNL     1       9.780   1.339   4.215  1.00  0.00           C  
HETATM   16  O5  UNL     1      10.527   2.478   3.937  1.00  0.00           O  
HETATM   17  C12 UNL     1      10.411   0.186   3.467  1.00  0.00           C  
HETATM   18  O6  UNL     1      11.549  -0.199   4.209  1.00  0.00           O  
HETATM   19  C13 UNL     1       9.502  -0.998   3.413  1.00  0.00           C  
HETATM   20  O7  UNL     1       9.434  -1.587   4.694  1.00  0.00           O  
HETATM   21  C14 UNL     1       6.141  -2.628  -0.891  1.00  0.00           C  
HETATM   22  O8  UNL     1       6.558  -3.736  -0.144  1.00  0.00           O  
HETATM   23  C15 UNL     1       4.661  -2.506  -0.851  1.00  0.00           C  
HETATM   24  C16 UNL     1       4.084  -1.212  -1.315  1.00  0.00           C  
HETATM   25  C17 UNL     1       3.996  -1.205  -2.826  1.00  0.00           C  
HETATM   26  C18 UNL     1       4.883  -0.017  -0.930  1.00  0.00           C  
HETATM   27  C19 UNL     1       4.324   1.153  -0.609  1.00  0.00           C  
HETATM   28  C20 UNL     1       2.877   1.450  -0.582  1.00  0.00           C  
HETATM   29  C21 UNL     1       2.172   0.301  -1.314  1.00  0.00           C  
HETATM   30  C22 UNL     1       0.704   0.452  -1.440  1.00  0.00           C  
HETATM   31  C23 UNL     1       0.343   0.273  -2.918  1.00  0.00           C  
HETATM   32  C24 UNL     1       0.203   1.867  -1.109  1.00  0.00           C  
HETATM   33  C25 UNL     1      -1.097   1.888  -0.396  1.00  0.00           C  
HETATM   34  C26 UNL     1      -2.142   0.929  -0.877  1.00  0.00           C  
HETATM   35  O9  UNL     1      -3.257   1.109  -0.023  1.00  0.00           O  
HETATM   36  C27 UNL     1      -4.379   1.534  -0.694  1.00  0.00           C  
HETATM   37  O10 UNL     1      -4.848   2.708  -0.166  1.00  0.00           O  
HETATM   38  C28 UNL     1      -5.994   3.171  -0.812  1.00  0.00           C  
HETATM   39  C29 UNL     1      -5.614   4.544  -1.382  1.00  0.00           C  
HETATM   40  O11 UNL     1      -5.238   5.405  -0.371  1.00  0.00           O  
HETATM   41  C30 UNL     1      -6.428   2.332  -1.967  1.00  0.00           C  
HETATM   42  O12 UNL     1      -5.762   2.618  -3.158  1.00  0.00           O  
HETATM   43  C31 UNL     1      -6.473   0.841  -1.666  1.00  0.00           C  
HETATM   44  O13 UNL     1      -7.729   0.472  -1.246  1.00  0.00           O  
HETATM   45  C32 UNL     1      -8.337  -0.422  -2.090  1.00  0.00           C  
HETATM   46  O14 UNL     1      -9.427   0.160  -2.727  1.00  0.00           O  
HETATM   47  C33 UNL     1     -10.473   0.505  -1.932  1.00  0.00           C  
HETATM   48  C34 UNL     1     -10.575   2.018  -1.706  1.00  0.00           C  
HETATM   49  O15 UNL     1     -10.740   2.684  -2.909  1.00  0.00           O  
HETATM   50  C35 UNL     1     -10.527  -0.141  -0.598  1.00  0.00           C  
HETATM   51  O16 UNL     1      -9.998   0.682   0.424  1.00  0.00           O  
HETATM   52  C36 UNL     1      -9.909  -1.514  -0.558  1.00  0.00           C  
HETATM   53  O17 UNL     1     -10.860  -2.518  -0.723  1.00  0.00           O  
HETATM   54  C37 UNL     1      -8.764  -1.712  -1.489  1.00  0.00           C  
HETATM   55  O18 UNL     1      -9.220  -2.527  -2.553  1.00  0.00           O  
HETATM   56  C38 UNL     1      -5.466   0.479  -0.600  1.00  0.00           C  
HETATM   57  O19 UNL     1      -6.025   0.565   0.676  1.00  0.00           O  
HETATM   58  C39 UNL     1      -5.784  -0.569   1.433  1.00  0.00           C  
HETATM   59  O20 UNL     1      -7.045  -1.187   1.655  1.00  0.00           O  
HETATM   60  C40 UNL     1      -6.903  -2.172   2.635  1.00  0.00           C  
HETATM   61  C41 UNL     1      -8.024  -3.157   2.491  1.00  0.00           C  
HETATM   62  O21 UNL     1      -8.018  -3.778   1.261  1.00  0.00           O  
HETATM   63  C42 UNL     1      -6.931  -1.476   3.965  1.00  0.00           C  
HETATM   64  O22 UNL     1      -6.234  -2.215   4.925  1.00  0.00           O  
HETATM   65  C43 UNL     1      -6.259  -0.114   3.807  1.00  0.00           C  
HETATM   66  O23 UNL     1      -5.662   0.222   5.013  1.00  0.00           O  
HETATM   67  C44 UNL     1      -5.150  -0.201   2.749  1.00  0.00           C  
HETATM   68  O24 UNL     1      -4.579   1.090   2.722  1.00  0.00           O  
HETATM   69  C45 UNL     1      -1.560  -0.463  -0.775  1.00  0.00           C  
HETATM   70  C46 UNL     1      -2.169  -1.083   0.491  1.00  0.00           C  
HETATM   71  C47 UNL     1      -1.975  -1.336  -1.918  1.00  0.00           C  
HETATM   72  C48 UNL     1      -0.065  -0.453  -0.527  1.00  0.00           C  
HETATM   73  C49 UNL     1       0.431  -1.836  -0.380  1.00  0.00           C  
HETATM   74  C50 UNL     1       1.757  -2.130  -0.999  1.00  0.00           C  
HETATM   75  C51 UNL     1       2.667  -0.992  -0.757  1.00  0.00           C  
HETATM   76  C52 UNL     1       2.887  -0.944   0.762  1.00  0.00           C  
HETATM   77  C53 UNL     1       6.374  -0.116  -0.913  1.00  0.00           C  
HETATM   78  C54 UNL     1       6.957   0.393  -2.243  1.00  0.00           C  
HETATM   79  H1  UNL     1       9.845   1.638  -3.365  1.00  0.00           H  
HETATM   80  H2  UNL     1       8.279   1.180  -4.166  1.00  0.00           H  
HETATM   81  H3  UNL     1       9.446  -0.092  -3.669  1.00  0.00           H  
HETATM   82  H4  UNL     1       7.944   2.870  -2.212  1.00  0.00           H  
HETATM   83  H5  UNL     1       7.864   2.345  -0.517  1.00  0.00           H  
HETATM   84  H6  UNL     1       9.478   2.565  -1.377  1.00  0.00           H  
HETATM   85  H7  UNL     1      10.054  -0.414  -1.584  1.00  0.00           H  
HETATM   86  H8  UNL     1       9.220   0.216  -0.156  1.00  0.00           H  
HETATM   87  H9  UNL     1       8.960  -2.242  -0.553  1.00  0.00           H  
HETATM   88  H10 UNL     1       8.282  -1.913  -2.167  1.00  0.00           H  
HETATM   89  H11 UNL     1       7.473  -1.528   3.366  1.00  0.00           H  
HETATM   90  H12 UNL     1       7.898   2.255   4.480  1.00  0.00           H  
HETATM   91  H13 UNL     1       8.922   1.781   1.635  1.00  0.00           H  
HETATM   92  H14 UNL     1       9.007   3.234   2.638  1.00  0.00           H  
HETATM   93  H15 UNL     1       7.075   3.703   1.994  1.00  0.00           H  
HETATM   94  H16 UNL     1       9.789   1.194   5.302  1.00  0.00           H  
HETATM   95  H17 UNL     1      11.289   2.610   4.546  1.00  0.00           H  
HETATM   96  H18 UNL     1      10.692   0.528   2.453  1.00  0.00           H  
HETATM   97  H19 UNL     1      12.252   0.472   4.195  1.00  0.00           H  
HETATM   98  H20 UNL     1       9.882  -1.723   2.677  1.00  0.00           H  
HETATM   99  H21 UNL     1       9.702  -0.926   5.386  1.00  0.00           H  
HETATM  100  H22 UNL     1       6.415  -2.906  -1.934  1.00  0.00           H  
HETATM  101  H23 UNL     1       5.766  -4.209   0.199  1.00  0.00           H  
HETATM  102  H24 UNL     1       4.177  -3.324  -1.423  1.00  0.00           H  
HETATM  103  H25 UNL     1       4.348  -2.658   0.205  1.00  0.00           H  
HETATM  104  H26 UNL     1       4.324  -0.250  -3.280  1.00  0.00           H  
HETATM  105  H27 UNL     1       4.663  -2.029  -3.220  1.00  0.00           H  
HETATM  106  H28 UNL     1       3.007  -1.418  -3.220  1.00  0.00           H  
HETATM  107  H29 UNL     1       5.001   1.978  -0.337  1.00  0.00           H  
HETATM  108  H30 UNL     1       2.790   2.394  -1.202  1.00  0.00           H  
HETATM  109  H31 UNL     1       2.560   1.572   0.445  1.00  0.00           H  
HETATM  110  H32 UNL     1       2.636   0.397  -2.347  1.00  0.00           H  
HETATM  111  H33 UNL     1       0.751  -0.649  -3.350  1.00  0.00           H  
HETATM  112  H34 UNL     1       0.934   1.100  -3.427  1.00  0.00           H  
HETATM  113  H35 UNL     1      -0.686   0.470  -3.166  1.00  0.00           H  
HETATM  114  H36 UNL     1       0.923   2.399  -0.439  1.00  0.00           H  
HETATM  115  H37 UNL     1       0.122   2.497  -2.013  1.00  0.00           H  
HETATM  116  H38 UNL     1      -1.529   2.923  -0.540  1.00  0.00           H  
HETATM  117  H39 UNL     1      -1.017   1.787   0.718  1.00  0.00           H  
HETATM  118  H40 UNL     1      -2.525   1.192  -1.875  1.00  0.00           H  
HETATM  119  H41 UNL     1      -4.157   1.642  -1.799  1.00  0.00           H  
HETATM  120  H42 UNL     1      -6.839   3.354  -0.129  1.00  0.00           H  
HETATM  121  H43 UNL     1      -6.433   4.984  -1.964  1.00  0.00           H  
HETATM  122  H44 UNL     1      -4.714   4.420  -2.052  1.00  0.00           H  
HETATM  123  H45 UNL     1      -4.251   5.466  -0.268  1.00  0.00           H  
HETATM  124  H46 UNL     1      -7.503   2.624  -2.173  1.00  0.00           H  
HETATM  125  H47 UNL     1      -5.644   1.830  -3.721  1.00  0.00           H  
HETATM  126  H48 UNL     1      -6.156   0.349  -2.609  1.00  0.00           H  
HETATM  127  H49 UNL     1      -7.604  -0.630  -2.916  1.00  0.00           H  
HETATM  128  H50 UNL     1     -11.416   0.251  -2.501  1.00  0.00           H  
HETATM  129  H51 UNL     1     -11.488   2.185  -1.070  1.00  0.00           H  
HETATM  130  H52 UNL     1      -9.682   2.392  -1.206  1.00  0.00           H  
HETATM  131  H53 UNL     1     -11.376   3.443  -2.856  1.00  0.00           H  
HETATM  132  H54 UNL     1     -11.606  -0.271  -0.318  1.00  0.00           H  
HETATM  133  H55 UNL     1     -10.468   0.533   1.273  1.00  0.00           H  
HETATM  134  H56 UNL     1      -9.523  -1.634   0.495  1.00  0.00           H  
HETATM  135  H57 UNL     1     -10.738  -3.245  -0.082  1.00  0.00           H  
HETATM  136  H58 UNL     1      -7.931  -2.293  -1.040  1.00  0.00           H  
HETATM  137  H59 UNL     1     -10.185  -2.682  -2.516  1.00  0.00           H  
HETATM  138  H60 UNL     1      -4.973  -0.486  -0.799  1.00  0.00           H  
HETATM  139  H61 UNL     1      -5.143  -1.295   0.881  1.00  0.00           H  
HETATM  140  H62 UNL     1      -5.920  -2.652   2.441  1.00  0.00           H  
HETATM  141  H63 UNL     1      -8.988  -2.600   2.659  1.00  0.00           H  
HETATM  142  H64 UNL     1      -7.925  -3.910   3.300  1.00  0.00           H  
HETATM  143  H65 UNL     1      -7.088  -3.954   0.972  1.00  0.00           H  
HETATM  144  H66 UNL     1      -7.968  -1.329   4.291  1.00  0.00           H  
HETATM  145  H67 UNL     1      -6.369  -3.173   4.675  1.00  0.00           H  
HETATM  146  H68 UNL     1      -6.978   0.656   3.473  1.00  0.00           H  
HETATM  147  H69 UNL     1      -5.723   1.207   5.113  1.00  0.00           H  
HETATM  148  H70 UNL     1      -4.401  -0.944   3.038  1.00  0.00           H  
HETATM  149  H71 UNL     1      -5.285   1.780   2.808  1.00  0.00           H  
HETATM  150  H72 UNL     1      -2.724  -0.338   1.095  1.00  0.00           H  
HETATM  151  H73 UNL     1      -2.915  -1.861   0.224  1.00  0.00           H  
HETATM  152  H74 UNL     1      -1.412  -1.611   1.104  1.00  0.00           H  
HETATM  153  H75 UNL     1      -1.171  -1.784  -2.494  1.00  0.00           H  
HETATM  154  H76 UNL     1      -2.633  -2.198  -1.597  1.00  0.00           H  
HETATM  155  H77 UNL     1      -2.671  -0.723  -2.563  1.00  0.00           H  
HETATM  156  H78 UNL     1       0.010   0.041   0.493  1.00  0.00           H  
HETATM  157  H79 UNL     1       0.502  -2.142   0.708  1.00  0.00           H  
HETATM  158  H80 UNL     1      -0.302  -2.583  -0.807  1.00  0.00           H  
HETATM  159  H81 UNL     1       1.620  -2.446  -2.036  1.00  0.00           H  
HETATM  160  H82 UNL     1       2.170  -3.038  -0.476  1.00  0.00           H  
HETATM  161  H83 UNL     1       3.928  -0.670   1.025  1.00  0.00           H  
HETATM  162  H84 UNL     1       2.236  -0.253   1.284  1.00  0.00           H  
HETATM  163  H85 UNL     1       2.722  -1.954   1.212  1.00  0.00           H  
HETATM  164  H86 UNL     1       6.750   0.671  -0.187  1.00  0.00           H  
HETATM  165  H87 UNL     1       6.417   1.308  -2.524  1.00  0.00           H  
HETATM  166  H88 UNL     1       6.974  -0.393  -3.006  1.00  0.00           H  
CONECT    1    2   79   80   81
CONECT    2    3    4   78
CONECT    3   82   83   84
CONECT    4    5   85   86
CONECT    5    6   87   88
CONECT    6    7   21   77
CONECT    7    8    8    9
CONECT    9   10
CONECT   10   11   19   89
CONECT   11   12
CONECT   12   13   15   90
CONECT   13   14   91   92
CONECT   14   93
CONECT   15   16   17   94
CONECT   16   95
CONECT   17   18   19   96
CONECT   18   97
CONECT   19   20   98
CONECT   20   99
CONECT   21   22   23  100
CONECT   22  101
CONECT   23   24  102  103
CONECT   24   25   26   75
CONECT   25  104  105  106
CONECT   26   27   27   77
CONECT   27   28  107
CONECT   28   29  108  109
CONECT   29   30   75  110
CONECT   30   31   32   72
CONECT   31  111  112  113
CONECT   32   33  114  115
CONECT   33   34  116  117
CONECT   34   35   69  118
CONECT   35   36
CONECT   36   37   56  119
CONECT   37   38
CONECT   38   39   41  120
CONECT   39   40  121  122
CONECT   40  123
CONECT   41   42   43  124
CONECT   42  125
CONECT   43   44   56  126
CONECT   44   45
CONECT   45   46   54  127
CONECT   46   47
CONECT   47   48   50  128
CONECT   48   49  129  130
CONECT   49  131
CONECT   50   51   52  132
CONECT   51  133
CONECT   52   53   54  134
CONECT   53  135
CONECT   54   55  136
CONECT   55  137
CONECT   56   57  138
CONECT   57   58
CONECT   58   59   67  139
CONECT   59   60
CONECT   60   61   63  140
CONECT   61   62  141  142
CONECT   62  143
CONECT   63   64   65  144
CONECT   64  145
CONECT   65   66   67  146
CONECT   66  147
CONECT   67   68  148
CONECT   68  149
CONECT   69   70   71   72
CONECT   70  150  151  152
CONECT   71  153  154  155
CONECT   72   73  156
CONECT   73   74  157  158
CONECT   74   75  159  160
CONECT   75   76
CONECT   76  161  162  163
CONECT   77   78  164
CONECT   78  165  166
END
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SMILES for HMDB0037258 (Araliasaponin VI)

CC1(C)CCC2(C(O)CC3(C)C(=CCC4C5(C)CCC(OC6OC(CO)C(O)C(OC7OC(CO)C(O)C(O)C7O)C6OC6OC(CO)C(O)C(O)C6O)C(C)(C)C5CCC34C)C2C1)C(=O)OC1OC(CO)C(O)C(O)C1O
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INCHI for HMDB0037258 (Araliasaponin VI)

InChI=1S/C54H88O24/c1-49(2)14-15-54(48(70)78-46-41(69)38(66)34(62)26(20-57)73-46)23(16-49)22-8-9-29-51(5)12-11-31(50(3,4)28(51)10-13-52(29,6)53(22,7)17-30(54)59)75-47-43(77-45-40(68)37(65)33(61)25(19-56)72-45)42(35(63)27(21-58)74-47)76-44-39(67)36(64)32(60)24(18-55)71-44/h8,23-47,55-69H,9-21H2,1-7H3
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View in JSmolView NMR AssignmentsView Stereo Labels
Synonyms
ValueSource
3,4,5-Trihydroxy-6-(hydroxymethyl)oxan-2-yl 5-hydroxy-10-{[5-hydroxy-6-(hydroxymethyl)-3,4-bis({[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})oxan-2-yl]oxy}-2,2,6a,6b,9,9,12a-heptamethyl-1,2,3,4,4a,5,6,6a,6b,7,8,8a,9,10,11,12,12a,12b,13,14b-icosahydropicene-4a-carboxylic acidHMDB
Chemical FormulaC54H88O24
Average Molecular Weight1121.2621
Monoisotopic Molecular Weight1120.566553744
IUPAC Name3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 5-hydroxy-10-{[5-hydroxy-6-(hydroxymethyl)-3,4-bis({[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})oxan-2-yl]oxy}-2,2,6a,6b,9,9,12a-heptamethyl-1,2,3,4,4a,5,6,6a,6b,7,8,8a,9,10,11,12,12a,12b,13,14b-icosahydropicene-4a-carboxylate
Traditional Name3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl 5-hydroxy-10-{[5-hydroxy-6-(hydroxymethyl)-3,4-bis({[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})oxan-2-yl]oxy}-2,2,6a,6b,9,9,12a-heptamethyl-1,3,4,5,6,7,8,8a,10,11,12,12b,13,14b-tetradecahydropicene-4a-carboxylate
CAS Registry Number340982-21-0
SMILES
CC1(C)CCC2(C(O)CC3(C)C(=CCC4C5(C)CCC(OC6OC(CO)C(O)C(OC7OC(CO)C(O)C(O)C7O)C6OC6OC(CO)C(O)C(O)C6O)C(C)(C)C5CCC34C)C2C1)C(=O)OC1OC(CO)C(O)C(O)C1O
InChI Identifier
InChI=1S/C54H88O24/c1-49(2)14-15-54(48(70)78-46-41(69)38(66)34(62)26(20-57)73-46)23(16-49)22-8-9-29-51(5)12-11-31(50(3,4)28(51)10-13-52(29,6)53(22,7)17-30(54)59)75-47-43(77-45-40(68)37(65)33(61)25(19-56)72-45)42(35(63)27(21-58)74-47)76-44-39(67)36(64)32(60)24(18-55)71-44/h8,23-47,55-69H,9-21H2,1-7H3
InChI KeyOIMHYZAWACXBBH-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as triterpene saponins. These are glycosylated derivatives of triterpene sapogenins. The sapogenin moiety backbone is usually based on the oleanane, ursane, taraxastane, bauerane, lanostane, lupeol, lupane, dammarane, cycloartane, friedelane, hopane, 9b,19-cyclo-lanostane, cycloartane, or cycloartanol skeleton.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassTerpene glycosides
Direct ParentTriterpene saponins
Alternative Parents
Substituents
  • Triterpene saponin
  • Triterpenoid
  • Oligosaccharide
  • Fatty acyl glycoside
  • Glycosyl compound
  • O-glycosyl compound
  • Beta-hydroxy acid
  • Fatty acyl
  • Hydroxy acid
  • Oxane
  • Cyclic alcohol
  • Carboxylic acid ester
  • Secondary alcohol
  • Acetal
  • Monocarboxylic acid or derivatives
  • Organoheterocyclic compound
  • Carboxylic acid derivative
  • Oxacycle
  • Polyol
  • Primary alcohol
  • Alcohol
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Carbonyl group
  • Organooxygen compound
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Biological locationRoute of exposureSource
Process
Naturally occurring process
Role
Biological roleIndustrial application
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility2.09 g/LALOGPS
logP0.31ALOGPS
logP-2.2ChemAxon
logS-2.7ALOGPS
pKa (Strongest Acidic)11.75ChemAxon
pKa (Strongest Basic)-3.6ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count23ChemAxon
Hydrogen Donor Count15ChemAxon
Polar Surface Area394.36 ŲChemAxon
Rotatable Bond Count13ChemAxon
Refractivity264.81 m³·mol⁻¹ChemAxon
Polarizability117.39 ųChemAxon
Number of Rings9ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M-2H]-364.33630932474
DeepCCS[M+Na]+338.34330932474
AllCCS[M+H]+326.932859911
AllCCS[M+H-H2O]+327.332859911
AllCCS[M+NH4]+326.432859911
AllCCS[M+Na]+326.332859911
AllCCS[M-H]-292.132859911
AllCCS[M+Na-2H]-298.332859911
AllCCS[M+HCOO]-305.032859911

Predicted Kovats Retention Indices

Not Available
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Araliasaponin VI 10V, Positive-QTOFsplash10-0006-0300102309-2bb17db3ffbd27d2114c2016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Araliasaponin VI 20V, Positive-QTOFsplash10-0007-0200405709-1ef8cafad80ca17bed222016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Araliasaponin VI 40V, Positive-QTOFsplash10-0002-1200502905-10e4f422a6413e6acd392016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Araliasaponin VI 10V, Negative-QTOFsplash10-0ktr-1700002049-a1427905735f79be99612016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Araliasaponin VI 20V, Negative-QTOFsplash10-0fbi-3900005326-9bfb4971723794d6fd662016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Araliasaponin VI 40V, Negative-QTOFsplash10-0059-5900104321-87deb35940f538c623f02016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Araliasaponin VI 10V, Positive-QTOFsplash10-00di-1900001005-532c133b2d725c9919a92021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Araliasaponin VI 20V, Positive-QTOFsplash10-0kmi-2900402204-e9c5a4c2d6dfdd8f636a2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Araliasaponin VI 40V, Positive-QTOFsplash10-05fs-9504201303-4674df4cffe6c203ffd52021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Araliasaponin VI 10V, Negative-QTOFsplash10-014i-1900000005-1f03b04a9c03d8778d7a2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Araliasaponin VI 20V, Negative-QTOFsplash10-066r-9400000002-165dce4859c847614d312021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Araliasaponin VI 40V, Negative-QTOFsplash10-0a6r-9000000603-fde2e92033d1129aa2f62021-09-22Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB016275
KNApSAcK IDC00036737
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound73157213
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.