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Record Information

Version

5.0

Status

Expected but not Quantified

Creation Date

2012-09-11 23:03:18 UTC

Update Date

2022-03-07 02:55:31 UTC

HMDB ID

HMDB0037795

Secondary Accession Numbers

HMDB37795

Metabolite Identification

Common Name

(3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one

Description

(3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one belongs to the class of organic compounds known as xanthophylls. These are carotenoids containing an oxygenated carotene backbone. Carotenes are characterized by the presence of two end-groups (mostly cyclohexene rings, but also cyclopentene rings or acyclic groups) linked by a long branched alkyl chain. Carotenes belonging form a subgroup of the carotenoids family. Xanthophylls arise by oxygenation of the carotene backbone. Based on a literature review a small amount of articles have been published on (3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

  Mrv0541 02241210252D          

 45 47  0  0  0  0            999 V2000
   -8.5096    0.2542    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5096   -0.5703    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7964   -0.9826    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0844   -0.5703    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0844    0.2542    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7964    0.6652    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5110    1.0774    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    6.4702   -0.5662    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0  0  0  0
  1  6  1  0  0  0  0
  2  3  1  0  0  0  0
  2  9  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  4 10  1  0  0  0  0
  4 11  1  0  0  0  0
  5  6  1  0  0  0  0
  5  9  1  0  0  0  0
  5 12  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
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 33 35  1  0  0  0  0
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 38 39  1  0  0  0  0
 38 43  1  0  0  0  0
 38 44  1  0  0  0  0
 39 40  1  0  0  0  0
 39 45  1  0  0  0  0
 40 41  1  0  0  0  0
M  END

HMDB0037795
     RDKit          3D
(3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-carote...
101103  0  0  0  0  0  0  0  0999 V2000
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 42 95  1  0
 44 96  1  0
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 45 99  1  0
 45100  1  0
 45101  1  0
M  END

  Mrv0541 02241210252D          

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  1  2  1  0  0  0  0
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M  END
> <DATABASE_ID>
HMDB0037795

> <DATABASE_NAME>
hmdb

> <SMILES>
C\C(\C=C\C=C(/C)\C=C\C12OC(CC1(C)C)CC2(C)O)=C/C=C/C=C(\C)/C=C/C=C(\C)/C(/O)=C/C(=O)C1(C)CCC(O)C1(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C40H56O5/c1-28(17-13-18-30(3)21-24-40-36(5,6)26-32(45-40)27-39(40,10)44)15-11-12-16-29(2)19-14-20-31(4)33(41)25-35(43)38(9)23-22-34(42)37(38,7)8/h11-21,24-25,32,34,41-42,44H,22-23,26-27H2,1-10H3/b12-11+,17-13+,19-14+,24-21+,28-15+,29-16+,30-18+,31-20+,33-25-

> <INCHI_KEY>
JBFAUTAUPAPLMY-UQDXBYLISA-N

> <FORMULA>
C40H56O5

> <MOLECULAR_WEIGHT>
616.8696

> <EXACT_MASS>
616.412774902

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_AVERAGE_POLARIZABILITY>
75.42763275401185

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2Z,4E,6E,8E,10E,12E,14E,16E,18E)-3-hydroxy-1-(3-hydroxy-1,2,2-trimethylcyclopentyl)-19-{2-hydroxy-2,6,6-trimethyl-7-oxabicyclo[2.2.1]heptan-1-yl}-4,8,13,17-tetramethylnonadeca-2,4,6,8,10,12,14,16,18-nonaen-1-one

> <ALOGPS_LOGP>
7.38

> <JCHEM_LOGP>
7.443840254000001

> <ALOGPS_LOGS>
-5.91

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.666261929241639

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.877527154367911

> <JCHEM_PKA_STRONGEST_BASIC>
-2.936215935348791

> <JCHEM_POLAR_SURFACE_AREA>
86.99

> <JCHEM_REFRACTIVITY>
195.39020000000008

> <JCHEM_ROTATABLE_BOND_COUNT>
11

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
7.55e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2Z,4E,6E,8E,10E,12E,14E,16E,18E)-3-hydroxy-1-(3-hydroxy-1,2,2-trimethylcyclopentyl)-19-{2-hydroxy-2,6,6-trimethyl-7-oxabicyclo[2.2.1]heptan-1-yl}-4,8,13,17-tetramethylnonadeca-2,4,6,8,10,12,14,16,18-nonaen-1-one

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0037795
     RDKit          3D
(3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-carote...
101103  0  0  0  0  0  0  0  0999 V2000
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   13.2015   -1.4849    1.7409 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.8253   -1.6165    0.9197 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.4335   -2.6699    0.4428 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.8024   -1.4870   -2.2557 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.5678   -2.3738   -1.3399 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.1438   -0.8105   -2.0946 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  6  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 14 16  1  0
 12 17  1  0
 17 18  1  0
 18 19  1  0
 18 20  1  0
  2 21  2  0
 21 22  1  0
 22 23  2  0
 23 24  1  0
 24 25  2  0
 25 26  1  0
 25 27  1  0
 27 28  2  0
 28 29  1  0
 29 30  2  0
 30 31  1  0
 30 32  1  0
 32 33  1  0
 32 34  2  0
 34 35  1  0
 35 36  2  0
 35 37  1  0
 37 38  1  0
 37 39  1  0
 39 40  1  0
 40 41  1  0
 41 42  1  0
 41 43  1  0
 43 44  1  0
 43 45  1  0
 14 10  1  0
 43 37  1  0
 18 10  1  0
  1 46  1  0
  1 47  1  0
  1 48  1  0
  3 49  1  0
  4 50  1  0
  5 51  1  0
  7 52  1  0
  7 53  1  0
  7 54  1  0
  8 55  1  0
  9 56  1  0
 12 57  1  0
 13 58  1  0
 13 59  1  0
 15 60  1  0
 15 61  1  0
 15 62  1  0
 16 63  1  0
 16 64  1  0
 16 65  1  0
 17 66  1  0
 17 67  1  0
 19 68  1  0
 19 69  1  0
 19 70  1  0
 20 71  1  0
 21 72  1  0
 22 73  1  0
 23 74  1  0
 24 75  1  0
 26 76  1  0
 26 77  1  0
 26 78  1  0
 27 79  1  0
 28 80  1  0
 29 81  1  0
 31 82  1  0
 31 83  1  0
 31 84  1  0
 33 85  1  0
 34 86  1  0
 38 87  1  0
 38 88  1  0
 38 89  1  0
 39 90  1  0
 39 91  1  0
 40 92  1  0
 40 93  1  0
 41 94  1  0
 42 95  1  0
 44 96  1  0
 44 97  1  0
 44 98  1  0
 45 99  1  0
 45100  1  0
 45101  1  0
M  END

HEADER    PROTEIN                                 24-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-FEB-12         0                                  
HETATM    1  C   UNK     0     -15.885   0.475   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0     -15.885  -1.065   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0     -14.553  -1.834   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0     -13.224  -1.065   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0     -13.224   0.475   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0     -14.553   1.242   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0     -15.887   2.011   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0     -13.219   2.011   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0     -14.551  -0.295   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0     -12.827  -2.552   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0     -11.890  -0.295   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0     -11.890   1.244   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0     -10.556   0.475   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -9.222   1.244   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -7.888   0.475   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -9.222   2.783   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -6.554   1.244   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -5.220   0.475   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -3.886   1.244   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -2.552   0.475   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -3.886   2.783   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      -1.219   1.244   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       0.115   0.475   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       1.449   1.244   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       2.783   0.475   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       4.117   1.244   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       2.783  -1.065   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       5.451   0.475   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       6.785   1.244   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       8.119   0.475   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       9.453   1.244   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       8.119  -1.065   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      10.787   0.475   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0       9.453   2.783   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0      12.121   1.244   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      13.455   0.475   0.000  0.00  0.00           C+0
HETATM   37  O   UNK     0      12.121   2.783   0.000  0.00  0.00           O+0
HETATM   38  C   UNK     0      13.617  -1.057   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      15.120  -1.378   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      15.887  -0.046   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      14.856   1.095   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0      13.455   2.014   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0      12.078  -1.057   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      13.455  -2.588   0.000  0.00  0.00           C+0
HETATM   45  O   UNK     0      15.746  -2.783   0.000  0.00  0.00           O+0
CONECT    1    2    6                                                       
CONECT    2    1    3    9                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5   10   11                                             
CONECT    5    4    6    9   12                                             
CONECT    6    1    5    7    8                                             
CONECT    7    6                                                            
CONECT    8    6                                                            
CONECT    9    2    5                                                       
CONECT   10    4                                                            
CONECT   11    4                                                            
CONECT   12    5   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14   17                                                       
CONECT   16   14                                                            
CONECT   17   15   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20   21                                                  
CONECT   20   19   22                                                       
CONECT   21   19                                                            
CONECT   22   20   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26   27                                                  
CONECT   26   25   28                                                       
CONECT   27   25                                                            
CONECT   28   26   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31   32                                                  
CONECT   31   30   33   34                                                  
CONECT   32   30                                                            
CONECT   33   31   35                                                       
CONECT   34   31                                                            
CONECT   35   33   36   37                                                  
CONECT   36   35   38   41   42                                             
CONECT   37   35                                                            
CONECT   38   36   39   43   44                                             
CONECT   39   38   40   45                                                  
CONECT   40   39   41                                                       
CONECT   41   36   40                                                       
CONECT   42   36                                                            
CONECT   43   38                                                            
CONECT   44   38                                                            
CONECT   45   39                                                            
MASTER        0    0    0    0    0    0    0    0   45    0   94    0
END

COMPND    HMDB0037795
HETATM    1  C1  UNL     1      -3.014  -1.527   0.002  1.00  0.00           C  
HETATM    2  C2  UNL     1      -3.392  -0.117   0.203  1.00  0.00           C  
HETATM    3  C3  UNL     1      -4.764   0.343   0.212  1.00  0.00           C  
HETATM    4  C4  UNL     1      -5.753  -0.511   0.083  1.00  0.00           C  
HETATM    5  C5  UNL     1      -7.177  -0.090   0.082  1.00  0.00           C  
HETATM    6  C6  UNL     1      -8.136  -0.987  -0.044  1.00  0.00           C  
HETATM    7  C7  UNL     1      -7.728  -2.399  -0.176  1.00  0.00           C  
HETATM    8  C8  UNL     1      -9.515  -0.565  -0.072  1.00  0.00           C  
HETATM    9  C9  UNL     1     -10.548  -1.337  -0.191  1.00  0.00           C  
HETATM   10  C10 UNL     1     -11.972  -0.973  -0.228  1.00  0.00           C  
HETATM   11  O1  UNL     1     -12.701  -1.766   0.722  1.00  0.00           O  
HETATM   12  C11 UNL     1     -13.981  -1.302   0.421  1.00  0.00           C  
HETATM   13  C12 UNL     1     -13.827   0.186   0.591  1.00  0.00           C  
HETATM   14  C13 UNL     1     -12.345   0.359   0.267  1.00  0.00           C  
HETATM   15  C14 UNL     1     -12.092   1.541  -0.589  1.00  0.00           C  
HETATM   16  C15 UNL     1     -11.681   0.577   1.621  1.00  0.00           C  
HETATM   17  C16 UNL     1     -14.105  -1.527  -1.076  1.00  0.00           C  
HETATM   18  C17 UNL     1     -12.648  -1.480  -1.470  1.00  0.00           C  
HETATM   19  C18 UNL     1     -12.367  -0.796  -2.735  1.00  0.00           C  
HETATM   20  O2  UNL     1     -12.259  -2.843  -1.561  1.00  0.00           O  
HETATM   21  C19 UNL     1      -2.415   0.802   0.344  1.00  0.00           C  
HETATM   22  C20 UNL     1      -1.044   0.398   0.290  1.00  0.00           C  
HETATM   23  C21 UNL     1       0.010   1.201   0.420  1.00  0.00           C  
HETATM   24  C22 UNL     1       1.321   0.612   0.332  1.00  0.00           C  
HETATM   25  C23 UNL     1       2.488   1.260   0.441  1.00  0.00           C  
HETATM   26  C24 UNL     1       2.418   2.719   0.676  1.00  0.00           C  
HETATM   27  C25 UNL     1       3.737   0.524   0.291  1.00  0.00           C  
HETATM   28  C26 UNL     1       4.891   1.144   0.399  1.00  0.00           C  
HETATM   29  C27 UNL     1       6.145   0.397   0.243  1.00  0.00           C  
HETATM   30  C28 UNL     1       7.354   0.928   0.341  1.00  0.00           C  
HETATM   31  C29 UNL     1       7.390   2.389   0.636  1.00  0.00           C  
HETATM   32  C30 UNL     1       8.529   0.097   0.149  1.00  0.00           C  
HETATM   33  O3  UNL     1       8.374  -1.242  -0.132  1.00  0.00           O  
HETATM   34  C31 UNL     1       9.731   0.612   0.243  1.00  0.00           C  
HETATM   35  C32 UNL     1      10.937  -0.225   0.049  1.00  0.00           C  
HETATM   36  O4  UNL     1      10.754  -1.434  -0.210  1.00  0.00           O  
HETATM   37  C33 UNL     1      12.278   0.348   0.157  1.00  0.00           C  
HETATM   38  C34 UNL     1      12.528   0.907   1.539  1.00  0.00           C  
HETATM   39  C35 UNL     1      12.443   1.513  -0.818  1.00  0.00           C  
HETATM   40  C36 UNL     1      13.812   1.410  -1.373  1.00  0.00           C  
HETATM   41  C37 UNL     1      14.491   0.302  -0.621  1.00  0.00           C  
HETATM   42  O5  UNL     1      15.365  -0.407  -1.443  1.00  0.00           O  
HETATM   43  C38 UNL     1      13.355  -0.637  -0.276  1.00  0.00           C  
HETATM   44  C39 UNL     1      13.716  -1.630   0.779  1.00  0.00           C  
HETATM   45  C40 UNL     1      12.946  -1.351  -1.551  1.00  0.00           C  
HETATM   46  H1  UNL     1      -3.813  -2.252   0.024  1.00  0.00           H  
HETATM   47  H2  UNL     1      -2.292  -1.860   0.813  1.00  0.00           H  
HETATM   48  H3  UNL     1      -2.497  -1.606  -0.987  1.00  0.00           H  
HETATM   49  H4  UNL     1      -5.003   1.419   0.322  1.00  0.00           H  
HETATM   50  H5  UNL     1      -5.563  -1.559  -0.030  1.00  0.00           H  
HETATM   51  H6  UNL     1      -7.439   0.953   0.183  1.00  0.00           H  
HETATM   52  H7  UNL     1      -7.020  -2.551  -1.045  1.00  0.00           H  
HETATM   53  H8  UNL     1      -7.075  -2.660   0.717  1.00  0.00           H  
HETATM   54  H9  UNL     1      -8.521  -3.124  -0.320  1.00  0.00           H  
HETATM   55  H10 UNL     1      -9.723   0.514   0.016  1.00  0.00           H  
HETATM   56  H11 UNL     1     -10.354  -2.423  -0.279  1.00  0.00           H  
HETATM   57  H12 UNL     1     -14.785  -1.743   0.994  1.00  0.00           H  
HETATM   58  H13 UNL     1     -14.411   0.740  -0.192  1.00  0.00           H  
HETATM   59  H14 UNL     1     -14.097   0.537   1.594  1.00  0.00           H  
HETATM   60  H15 UNL     1     -11.560   2.310   0.007  1.00  0.00           H  
HETATM   61  H16 UNL     1     -13.022   2.050  -0.937  1.00  0.00           H  
HETATM   62  H17 UNL     1     -11.420   1.278  -1.408  1.00  0.00           H  
HETATM   63  H18 UNL     1     -10.994  -0.269   1.864  1.00  0.00           H  
HETATM   64  H19 UNL     1     -11.165   1.557   1.610  1.00  0.00           H  
HETATM   65  H20 UNL     1     -12.413   0.630   2.457  1.00  0.00           H  
HETATM   66  H21 UNL     1     -14.712  -0.748  -1.565  1.00  0.00           H  
HETATM   67  H22 UNL     1     -14.574  -2.523  -1.229  1.00  0.00           H  
HETATM   68  H23 UNL     1     -12.885   0.153  -2.903  1.00  0.00           H  
HETATM   69  H24 UNL     1     -11.279  -0.602  -2.839  1.00  0.00           H  
HETATM   70  H25 UNL     1     -12.570  -1.530  -3.578  1.00  0.00           H  
HETATM   71  H26 UNL     1     -12.438  -3.234  -0.652  1.00  0.00           H  
HETATM   72  H27 UNL     1      -2.721   1.815   0.494  1.00  0.00           H  
HETATM   73  H28 UNL     1      -0.830  -0.674   0.123  1.00  0.00           H  
HETATM   74  H29 UNL     1      -0.219   2.241   0.583  1.00  0.00           H  
HETATM   75  H30 UNL     1       1.425  -0.461   0.163  1.00  0.00           H  
HETATM   76  H31 UNL     1       2.574   2.887   1.770  1.00  0.00           H  
HETATM   77  H32 UNL     1       1.493   3.188   0.294  1.00  0.00           H  
HETATM   78  H33 UNL     1       3.316   3.213   0.198  1.00  0.00           H  
HETATM   79  H34 UNL     1       3.751  -0.537   0.092  1.00  0.00           H  
HETATM   80  H35 UNL     1       4.983   2.199   0.601  1.00  0.00           H  
HETATM   81  H36 UNL     1       6.086  -0.677   0.031  1.00  0.00           H  
HETATM   82  H37 UNL     1       6.883   2.931  -0.184  1.00  0.00           H  
HETATM   83  H38 UNL     1       8.367   2.778   0.914  1.00  0.00           H  
HETATM   84  H39 UNL     1       6.733   2.524   1.543  1.00  0.00           H  
HETATM   85  H40 UNL     1       7.815  -1.857   0.452  1.00  0.00           H  
HETATM   86  H41 UNL     1       9.925   1.651   0.462  1.00  0.00           H  
HETATM   87  H42 UNL     1      11.941   1.866   1.599  1.00  0.00           H  
HETATM   88  H43 UNL     1      12.132   0.254   2.337  1.00  0.00           H  
HETATM   89  H44 UNL     1      13.582   1.182   1.716  1.00  0.00           H  
HETATM   90  H45 UNL     1      11.642   1.469  -1.592  1.00  0.00           H  
HETATM   91  H46 UNL     1      12.321   2.498  -0.317  1.00  0.00           H  
HETATM   92  H47 UNL     1      14.350   2.382  -1.255  1.00  0.00           H  
HETATM   93  H48 UNL     1      13.743   1.117  -2.446  1.00  0.00           H  
HETATM   94  H49 UNL     1      14.993   0.670   0.299  1.00  0.00           H  
HETATM   95  H50 UNL     1      15.816  -1.098  -0.877  1.00  0.00           H  
HETATM   96  H51 UNL     1      13.201  -1.485   1.741  1.00  0.00           H  
HETATM   97  H52 UNL     1      14.825  -1.616   0.920  1.00  0.00           H  
HETATM   98  H53 UNL     1      13.434  -2.670   0.443  1.00  0.00           H  
HETATM   99  H54 UNL     1      13.802  -1.487  -2.256  1.00  0.00           H  
HETATM  100  H55 UNL     1      12.568  -2.374  -1.340  1.00  0.00           H  
HETATM  101  H56 UNL     1      12.144  -0.810  -2.095  1.00  0.00           H  
CONECT    1    2   46   47   48
CONECT    2    3   21   21
CONECT    3    4    4   49
CONECT    4    5   50
CONECT    5    6    6   51
CONECT    6    7    8
CONECT    7   52   53   54
CONECT    8    9    9   55
CONECT    9   10   56
CONECT   10   11   14   18
CONECT   11   12
CONECT   12   13   17   57
CONECT   13   14   58   59
CONECT   14   15   16
CONECT   15   60   61   62
CONECT   16   63   64   65
CONECT   17   18   66   67
CONECT   18   19   20
CONECT   19   68   69   70
CONECT   20   71
CONECT   21   22   72
CONECT   22   23   23   73
CONECT   23   24   74
CONECT   24   25   25   75
CONECT   25   26   27
CONECT   26   76   77   78
CONECT   27   28   28   79
CONECT   28   29   80
CONECT   29   30   30   81
CONECT   30   31   32
CONECT   31   82   83   84
CONECT   32   33   34   34
CONECT   33   85
CONECT   34   35   86
CONECT   35   36   36   37
CONECT   37   38   39   43
CONECT   38   87   88   89
CONECT   39   40   90   91
CONECT   40   41   92   93
CONECT   41   42   43   94
CONECT   42   95
CONECT   43   44   45
CONECT   44   96   97   98
CONECT   45   99  100  101
END

HMDB0037795
     RDKit          3D
(3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-carote...
101103  0  0  0  0  0  0  0  0999 V2000
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M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
(3S,3's,5R,5'r,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-b,kappa-caroten-6'-one	Generator
(3S,3's,5R,5'r,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-β,kappa-caroten-6'-one	Generator

Chemical Formula

C₄₀H₅₆O₅

Average Molecular Weight

616.8696

Monoisotopic Molecular Weight

616.412774902

IUPAC Name

(2Z,4E,6E,8E,10E,12E,14E,16E,18E)-3-hydroxy-1-(3-hydroxy-1,2,2-trimethylcyclopentyl)-19-{2-hydroxy-2,6,6-trimethyl-7-oxabicyclo[2.2.1]heptan-1-yl}-4,8,13,17-tetramethylnonadeca-2,4,6,8,10,12,14,16,18-nonaen-1-one

Traditional Name

CAS Registry Number

256505-53-0

SMILES

C\C(\C=C\C=C(/C)\C=C\C12OC(CC1(C)C)CC2(C)O)=C/C=C/C=C(\C)/C=C/C=C(\C)/C(/O)=C/C(=O)C1(C)CCC(O)C1(C)C

InChI Identifier

InChI=1S/C40H56O5/c1-28(17-13-18-30(3)21-24-40-36(5,6)26-32(45-40)27-39(40,10)44)15-11-12-16-29(2)19-14-20-31(4)33(41)25-35(43)38(9)23-22-34(42)37(38,7)8/h11-21,24-25,32,34,41-42,44H,22-23,26-27H2,1-10H3/b12-11+,17-13+,19-14+,24-21+,28-15+,29-16+,30-18+,31-20+,33-25-

InChI Key

JBFAUTAUPAPLMY-UQDXBYLISA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as xanthophylls. These are carotenoids containing an oxygenated carotene backbone. Carotenes are characterized by the presence of two end-groups (mostly cyclohexene rings, but also cyclopentene rings or acyclic groups) linked by a long branched alkyl chain. Carotenes belonging form a subgroup of the carotenoids family. Xanthophylls arise by oxygenation of the carotene backbone.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Tetraterpenoids

Direct Parent

Xanthophylls

Alternative Parents

Substituents

Xanthophyll
Cyclopentanol
Monosaccharide
Acryloyl-group
Cyclic alcohol
Enone
Vinylogous acid
Alpha,beta-unsaturated ketone
Tetrahydrofuran
Tertiary alcohol
Ketone
Secondary alcohol
Dialkyl ether
Enol
Oxacycle
Ether
Organoheterocyclic compound
Organic oxygen compound
Hydrocarbon derivative
Alcohol
Carbonyl group
Organic oxide
Organooxygen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Cellular substructure

Route of exposure

Enteral

Ingestion (HMDB: HMDB0037795)

Source

Endogenous

Endogenous (HMDB: HMDB0037795)

Animal

Animal (HMDB: HMDB0037795)

Exogenous

Food

Food (HMDB: HMDB0037795)

Aquatic origin

Mollusk

Mollusks (FooDB: FOOD00868)

Exogenous (HMDB: HMDB0037795)

Process

Naturally occurring process

Biological process

Chemical reaction

Lipid Peroxidation (HMDB: HMDB0037795)

Biochemical pathway

Metabolic pathway

Fatty Acid Metabolism (HMDB: HMDB0037795)

Lipid metabolism pathway (HMDB: HMDB0037795)

Cellular process

Cell signaling (HMDB: HMDB0037795)

Biochemical process

Lipid transport (HMDB: HMDB0037795)

Role

Biological role

Energy source (HMDB: HMDB0037795)

Industrial application

Manufacturing industry

Material processing agent

Solid material processing agent

Protective agent

Antioxidant (HMDB: HMDB0037795)

Fluid processing agent

Surfactant

Surfactant (HMDB: HMDB0037795)

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
Water Solubility	0.00076 g/L	ALOGPS
logP	7.38	ALOGPS
logP	7.44	ChemAxon
logS	-5.9	ALOGPS
pKa (Strongest Acidic)	8.88	ChemAxon
pKa (Strongest Basic)	-2.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	86.99 Å²	ChemAxon
Rotatable Bond Count	11	ChemAxon
Refractivity	195.39 m³·mol⁻¹	ChemAxon
Polarizability	75.43 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M-2H]-	299.253	30932474
DeepCCS	[M+Na]+	273.465	30932474
AllCCS	[M+H]+	262.6	32859911
AllCCS	[M+H-H2O]+	261.1	32859911
AllCCS	[M+NH4]+	263.9	32859911
AllCCS	[M+Na]+	264.3	32859911
AllCCS	[M-H]-	246.3	32859911
AllCCS	[M+Na-2H]-	251.3	32859911
AllCCS	[M+HCOO]-	257.0	32859911

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
(3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one	C\C(\C=C\C=C(/C)\C=C\C12OC(CC1(C)C)CC2(C)O)=C/C=C/C=C(\C)/C=C/C=C(\C)/C(/O)=C/C(=O)C1(C)CCC(O)C1(C)C	6421.8	Standard polar	33892256
(3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one	C\C(\C=C\C=C(/C)\C=C\C12OC(CC1(C)C)CC2(C)O)=C/C=C/C=C(\C)/C=C/C=C(\C)/C(/O)=C/C(=O)C1(C)CCC(O)C1(C)C	4643.7	Standard non polar	33892256
(3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one	C\C(\C=C\C=C(/C)\C=C\C12OC(CC1(C)C)CC2(C)O)=C/C=C/C=C(\C)/C=C/C=C(\C)/C(/O)=C/C(=O)C1(C)CCC(O)C1(C)C	4631.7	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
(3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one,1TMS,isomer #1	CC(/C=C/C=C(C)/C=C/C12OC(CC1(C)C)CC2(C)O[Si](C)(C)C)=C\C=C\C=C(C)\C=C\C=C(C)\C(O)=C\C(=O)C1(C)CCC(O)C1(C)C	4675.4	Semi standard non polar	33892256
(3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one,1TMS,isomer #2	CC(/C=C/C=C(C)/C=C/C12OC(CC1(C)C)CC2(C)O)=C\C=C\C=C(C)\C=C\C=C(C)\C(=C\C(=O)C1(C)CCC(O)C1(C)C)O[Si](C)(C)C	4625.9	Semi standard non polar	33892256
(3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one,1TMS,isomer #3	CC(/C=C/C=C(C)/C=C/C12OC(CC1(C)C)CC2(C)O)=C\C=C\C=C(C)\C=C\C=C(C)\C(O)=C\C(=O)C1(C)CCC(O[Si](C)(C)C)C1(C)C	4636.5	Semi standard non polar	33892256
(3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one,2TMS,isomer #1	CC(/C=C/C=C(C)/C=C/C12OC(CC1(C)C)CC2(C)O[Si](C)(C)C)=C\C=C\C=C(C)\C=C\C=C(C)\C(=C\C(=O)C1(C)CCC(O)C1(C)C)O[Si](C)(C)C	4623.4	Semi standard non polar	33892256
(3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one,2TMS,isomer #2	CC(/C=C/C=C(C)/C=C/C12OC(CC1(C)C)CC2(C)O[Si](C)(C)C)=C\C=C\C=C(C)\C=C\C=C(C)\C(O)=C\C(=O)C1(C)CCC(O[Si](C)(C)C)C1(C)C	4618.5	Semi standard non polar	33892256
(3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one,2TMS,isomer #3	CC(/C=C/C=C(C)/C=C/C12OC(CC1(C)C)CC2(C)O)=C\C=C\C=C(C)\C=C\C=C(C)\C(=C\C(=O)C1(C)CCC(O[Si](C)(C)C)C1(C)C)O[Si](C)(C)C	4586.1	Semi standard non polar	33892256
(3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one,3TMS,isomer #1	CC(/C=C/C=C(C)/C=C/C12OC(CC1(C)C)CC2(C)O[Si](C)(C)C)=C\C=C\C=C(C)\C=C\C=C(C)\C(=C\C(=O)C1(C)CCC(O[Si](C)(C)C)C1(C)C)O[Si](C)(C)C	4558.9	Semi standard non polar	33892256
(3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one,1TBDMS,isomer #1	CC(/C=C/C=C(C)/C=C/C12OC(CC1(C)C)CC2(C)O[Si](C)(C)C(C)(C)C)=C\C=C\C=C(C)\C=C\C=C(C)\C(O)=C\C(=O)C1(C)CCC(O)C1(C)C	4918.0	Semi standard non polar	33892256
(3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one,1TBDMS,isomer #2	CC(/C=C/C=C(C)/C=C/C12OC(CC1(C)C)CC2(C)O)=C\C=C\C=C(C)\C=C\C=C(C)\C(=C\C(=O)C1(C)CCC(O)C1(C)C)O[Si](C)(C)C(C)(C)C	4861.6	Semi standard non polar	33892256
(3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one,1TBDMS,isomer #3	CC(/C=C/C=C(C)/C=C/C12OC(CC1(C)C)CC2(C)O)=C\C=C\C=C(C)\C=C\C=C(C)\C(O)=C\C(=O)C1(C)CCC(O[Si](C)(C)C(C)(C)C)C1(C)C	4881.6	Semi standard non polar	33892256
(3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one,2TBDMS,isomer #1	CC(/C=C/C=C(C)/C=C/C12OC(CC1(C)C)CC2(C)O[Si](C)(C)C(C)(C)C)=C\C=C\C=C(C)\C=C\C=C(C)\C(=C\C(=O)C1(C)CCC(O)C1(C)C)O[Si](C)(C)C(C)(C)C	5103.9	Semi standard non polar	33892256
(3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one,2TBDMS,isomer #2	CC(/C=C/C=C(C)/C=C/C12OC(CC1(C)C)CC2(C)O[Si](C)(C)C(C)(C)C)=C\C=C\C=C(C)\C=C\C=C(C)\C(O)=C\C(=O)C1(C)CCC(O[Si](C)(C)C(C)(C)C)C1(C)C	5108.4	Semi standard non polar	33892256
(3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one,2TBDMS,isomer #3	CC(/C=C/C=C(C)/C=C/C12OC(CC1(C)C)CC2(C)O)=C\C=C\C=C(C)\C=C\C=C(C)\C(=C\C(=O)C1(C)CCC(O[Si](C)(C)C(C)(C)C)C1(C)C)O[Si](C)(C)C(C)(C)C	5071.2	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - (3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one GC-MS (Non-derivatized) - 70eV, Positive	splash10-0pb9-7100294000-70b2c68b664763cace64	2017-09-01	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one GC-MS (1 TMS) - 70eV, Positive	splash10-00di-7100049000-2c6595df0e1bea6c74dc	2017-10-06	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one GC-MS (TMS_1_2) - 70eV, Positive	Not Available	2021-10-16	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one GC-MS (TMS_1_3) - 70eV, Positive	Not Available	2021-10-16	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one GC-MS (TMS_2_1) - 70eV, Positive	Not Available	2021-10-16	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one GC-MS (TMS_2_2) - 70eV, Positive	Not Available	2021-10-16	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one GC-MS (TMS_2_3) - 70eV, Positive	Not Available	2021-10-16	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one GC-MS (TMS_3_1) - 70eV, Positive	Not Available	2021-10-16	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one GC-MS (TBDMS_1_1) - 70eV, Positive	Not Available	2021-10-16	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one GC-MS (TBDMS_1_2) - 70eV, Positive	Not Available	2021-10-16	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one GC-MS (TBDMS_1_3) - 70eV, Positive	Not Available	2021-10-16	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one GC-MS (TBDMS_2_1) - 70eV, Positive	Not Available	2021-10-16	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one GC-MS (TBDMS_2_2) - 70eV, Positive	Not Available	2021-10-16	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one GC-MS (TBDMS_2_3) - 70eV, Positive	Not Available	2021-10-16	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one GC-MS ("(3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one,1TMS,#1" TMS) - 70eV, Positive	Not Available	2021-11-02	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one 10V, Positive-QTOF	splash10-0002-0521942000-06a440d53a07f0e8f10a	2016-08-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one 20V, Positive-QTOF	splash10-052b-3642930000-1c1db9100109609353de	2016-08-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one 40V, Positive-QTOF	splash10-056r-3960100000-cb602f77717137c9f4d8	2016-08-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one 10V, Negative-QTOF	splash10-014i-0500539000-decbf06136b865825d5c	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one 20V, Negative-QTOF	splash10-014j-0800933000-f439dc3a0f87fd1efc0e	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one 40V, Negative-QTOF	splash10-1009-1900240000-02c218983e61abc2d7f1	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one 10V, Negative-QTOF	splash10-014i-0710009000-284ccdd7f575875a4713	2021-09-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one 20V, Negative-QTOF	splash10-014j-0605934000-29bbc3bcd234348c9ca8	2021-09-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one 40V, Negative-QTOF	splash10-0a4i-6539551000-dded066ce27a07be07ae	2021-09-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one 10V, Positive-QTOF	splash10-014i-1204097000-3a885104aa0f8a621557	2021-09-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one 20V, Positive-QTOF	splash10-0a6r-3329220000-e25d6418a9339959f363	2021-09-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one 40V, Positive-QTOF	splash10-00p0-5497300000-430f0c5c73b566084176	2021-09-25	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Membrane

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB016939

KNApSAcK ID

Not Available

Chemspider ID

35014472

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

131752236

PDB ID

Not Available

ChEBI ID

176237

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
(). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.

Showing metabocard for (3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one (HMDB0037795)

MOL for HMDB0037795 ((3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one)

3D MOL for HMDB0037795 ((3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one)

3D SDF for HMDB0037795 ((3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one)

3D-SDF for HMDB0037795 ((3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one)

PDB for HMDB0037795 ((3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one)

3D PDB for HMDB0037795 ((3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one)

SMILES for HMDB0037795 ((3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one)

INCHI for HMDB0037795 ((3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one)

Structure for HMDB0037795 ((3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one)

3D Structure for HMDB0037795 ((3S,3'S,5R,5'R,6R)-3,6-Epoxy-5,6-dihydro-3',5,8'-trihydroxy-beta,kappa-caroten-6'-one)

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra

MS/MS Spectra