Hmdb loader
Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2012-09-11 23:04:33 UTC
Update Date2022-09-22 18:35:11 UTC
HMDB IDHMDB0037817
Secondary Accession Numbers
  • HMDB37817
Metabolite Identification
Common NameAldosine
DescriptionAldosine belongs to the class of organic compounds known as alpha amino acids. These are amino acids in which the amino group is attached to the carbon atom immediately adjacent to the carboxylate group (alpha carbon). Based on a literature review a small amount of articles have been published on Aldosine.
Structure
Data?1563863092
Synonyms
ValueSource
5-(6-Carboxy-2-piperidinyl)-1,2,3,4-tetrahydro-2-pyridinecarboxylic acid, 9ciHMDB
5-(6-Carboxypiperidin-2-yl)-1,2,3,4-tetrahydropyridine-2-carboxylateGenerator
AldosineMeSH
Chemical FormulaC12H18N2O4
Average Molecular Weight254.2823
Monoisotopic Molecular Weight254.126657074
IUPAC Name5-(6-carboxypiperidin-2-yl)-1,2,3,4-tetrahydropyridine-2-carboxylic acid
Traditional Name5-(6-carboxypiperidin-2-yl)-1,2,3,4-tetrahydropyridine-2-carboxylic acid
CAS Registry Number142759-11-3
SMILES
OC(=O)C1CCC(=CN1)C1CCCC(N1)C(O)=O
InChI Identifier
InChI=1S/C12H18N2O4/c15-11(16)9-5-4-7(6-13-9)8-2-1-3-10(14-8)12(17)18/h6,8-10,13-14H,1-5H2,(H,15,16)(H,17,18)
InChI KeyFZNMMFIPIGBAJL-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as alpha amino acids. These are amino acids in which the amino group is attached to the carbon atom immediately adjacent to the carboxylate group (alpha carbon).
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentAlpha amino acids
Alternative Parents
Substituents
  • Alpha-amino acid
  • Piperidinecarboxylic acid
  • Tetrahydropyridine
  • Dicarboxylic acid or derivatives
  • Hydropyridine
  • Piperidine
  • Amino acid
  • Allylamine
  • Carboxylic acid
  • Secondary aliphatic amine
  • Enamine
  • Secondary amine
  • Organoheterocyclic compound
  • Azacycle
  • Organonitrogen compound
  • Organic nitrogen compound
  • Carbonyl group
  • Organooxygen compound
  • Organic oxygen compound
  • Amine
  • Organic oxide
  • Organopnictogen compound
  • Hydrocarbon derivative
  • Aliphatic heteromonocyclic compound
Molecular FrameworkAliphatic heteromonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
Role
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility3.37 g/LALOGPS
logP-1.4ALOGPS
logP-4.6ChemAxon
logS-1.9ALOGPS
pKa (Strongest Acidic)1.36ChemAxon
pKa (Strongest Basic)9.94ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area98.66 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity62.89 m³·mol⁻¹ChemAxon
Polarizability26.42 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+160.41631661259
DarkChem[M-H]-153.43931661259
DeepCCS[M+H]+154.75830932474
DeepCCS[M-H]-152.430932474
DeepCCS[M-2H]-186.47530932474
DeepCCS[M+Na]+161.3430932474
AllCCS[M+H]+160.632859911
AllCCS[M+H-H2O]+156.832859911
AllCCS[M+NH4]+164.132859911
AllCCS[M+Na]+165.132859911
AllCCS[M-H]-160.632859911
AllCCS[M+Na-2H]-160.532859911
AllCCS[M+HCOO]-160.532859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
AldosineOC(=O)C1CCC(=CN1)C1CCCC(N1)C(O)=O3676.7Standard polar33892256
AldosineOC(=O)C1CCC(=CN1)C1CCCC(N1)C(O)=O2220.1Standard non polar33892256
AldosineOC(=O)C1CCC(=CN1)C1CCCC(N1)C(O)=O2557.0Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Aldosine,1TMS,isomer #1C[Si](C)(C)OC(=O)C1CCC(C2CCCC(C(=O)O)N2)=CN12454.5Semi standard non polar33892256
Aldosine,1TMS,isomer #2C[Si](C)(C)OC(=O)C1CCCC(C2=CNC(C(=O)O)CC2)N12469.4Semi standard non polar33892256
Aldosine,1TMS,isomer #3C[Si](C)(C)N1C=C(C2CCCC(C(=O)O)N2)CCC1C(=O)O2463.5Semi standard non polar33892256
Aldosine,1TMS,isomer #4C[Si](C)(C)N1C(C(=O)O)CCCC1C1=CNC(C(=O)O)CC12434.7Semi standard non polar33892256
Aldosine,2TMS,isomer #1C[Si](C)(C)OC(=O)C1CCC(C2CCCC(C(=O)O[Si](C)(C)C)N2)=CN12430.1Semi standard non polar33892256
Aldosine,2TMS,isomer #2C[Si](C)(C)OC(=O)C1CCC(C2CCCC(C(=O)O)N2[Si](C)(C)C)=CN12383.9Semi standard non polar33892256
Aldosine,2TMS,isomer #3C[Si](C)(C)OC(=O)C1CCC(C2CCCC(C(=O)O)N2)=CN1[Si](C)(C)C2454.9Semi standard non polar33892256
Aldosine,2TMS,isomer #4C[Si](C)(C)OC(=O)C1CCCC(C2=CN([Si](C)(C)C)C(C(=O)O)CC2)N12465.5Semi standard non polar33892256
Aldosine,2TMS,isomer #5C[Si](C)(C)OC(=O)C1CCCC(C2=CNC(C(=O)O)CC2)N1[Si](C)(C)C2385.0Semi standard non polar33892256
Aldosine,2TMS,isomer #6C[Si](C)(C)N1C=C(C2CCCC(C(=O)O)N2[Si](C)(C)C)CCC1C(=O)O2417.1Semi standard non polar33892256
Aldosine,3TMS,isomer #1C[Si](C)(C)OC(=O)C1CCC(C2CCCC(C(=O)O[Si](C)(C)C)N2[Si](C)(C)C)=CN12376.7Semi standard non polar33892256
Aldosine,3TMS,isomer #1C[Si](C)(C)OC(=O)C1CCC(C2CCCC(C(=O)O[Si](C)(C)C)N2[Si](C)(C)C)=CN12413.9Standard non polar33892256
Aldosine,3TMS,isomer #2C[Si](C)(C)OC(=O)C1CCCC(C2=CN([Si](C)(C)C)C(C(=O)O[Si](C)(C)C)CC2)N12471.0Semi standard non polar33892256
Aldosine,3TMS,isomer #2C[Si](C)(C)OC(=O)C1CCCC(C2=CN([Si](C)(C)C)C(C(=O)O[Si](C)(C)C)CC2)N12390.3Standard non polar33892256
Aldosine,3TMS,isomer #3C[Si](C)(C)OC(=O)C1CCC(C2CCCC(C(=O)O)N2[Si](C)(C)C)=CN1[Si](C)(C)C2436.3Semi standard non polar33892256
Aldosine,3TMS,isomer #3C[Si](C)(C)OC(=O)C1CCC(C2CCCC(C(=O)O)N2[Si](C)(C)C)=CN1[Si](C)(C)C2376.9Standard non polar33892256
Aldosine,3TMS,isomer #4C[Si](C)(C)OC(=O)C1CCCC(C2=CN([Si](C)(C)C)C(C(=O)O)CC2)N1[Si](C)(C)C2453.1Semi standard non polar33892256
Aldosine,3TMS,isomer #4C[Si](C)(C)OC(=O)C1CCCC(C2=CN([Si](C)(C)C)C(C(=O)O)CC2)N1[Si](C)(C)C2401.6Standard non polar33892256
Aldosine,4TMS,isomer #1C[Si](C)(C)OC(=O)C1CCC(C2CCCC(C(=O)O[Si](C)(C)C)N2[Si](C)(C)C)=CN1[Si](C)(C)C2469.1Semi standard non polar33892256
Aldosine,4TMS,isomer #1C[Si](C)(C)OC(=O)C1CCC(C2CCCC(C(=O)O[Si](C)(C)C)N2[Si](C)(C)C)=CN1[Si](C)(C)C2426.7Standard non polar33892256
Aldosine,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)C1CCC(C2CCCC(C(=O)O)N2)=CN12720.3Semi standard non polar33892256
Aldosine,1TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC(=O)C1CCCC(C2=CNC(C(=O)O)CC2)N12726.9Semi standard non polar33892256
Aldosine,1TBDMS,isomer #3CC(C)(C)[Si](C)(C)N1C=C(C2CCCC(C(=O)O)N2)CCC1C(=O)O2720.9Semi standard non polar33892256
Aldosine,1TBDMS,isomer #4CC(C)(C)[Si](C)(C)N1C(C(=O)O)CCCC1C1=CNC(C(=O)O)CC12670.0Semi standard non polar33892256
Aldosine,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)C1CCC(C2CCCC(C(=O)O[Si](C)(C)C(C)(C)C)N2)=CN12884.9Semi standard non polar33892256
Aldosine,2TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC(=O)C1CCC(C2CCCC(C(=O)O)N2[Si](C)(C)C(C)(C)C)=CN12859.3Semi standard non polar33892256
Aldosine,2TBDMS,isomer #3CC(C)(C)[Si](C)(C)OC(=O)C1CCC(C2CCCC(C(=O)O)N2)=CN1[Si](C)(C)C(C)(C)C2927.1Semi standard non polar33892256
Aldosine,2TBDMS,isomer #4CC(C)(C)[Si](C)(C)OC(=O)C1CCCC(C2=CN([Si](C)(C)C(C)(C)C)C(C(=O)O)CC2)N12920.7Semi standard non polar33892256
Aldosine,2TBDMS,isomer #5CC(C)(C)[Si](C)(C)OC(=O)C1CCCC(C2=CNC(C(=O)O)CC2)N1[Si](C)(C)C(C)(C)C2864.5Semi standard non polar33892256
Aldosine,2TBDMS,isomer #6CC(C)(C)[Si](C)(C)N1C=C(C2CCCC(C(=O)O)N2[Si](C)(C)C(C)(C)C)CCC1C(=O)O2905.2Semi standard non polar33892256
Aldosine,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)C1CCC(C2CCCC(C(=O)O[Si](C)(C)C(C)(C)C)N2[Si](C)(C)C(C)(C)C)=CN13035.0Semi standard non polar33892256
Aldosine,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)C1CCC(C2CCCC(C(=O)O[Si](C)(C)C(C)(C)C)N2[Si](C)(C)C(C)(C)C)=CN13047.1Standard non polar33892256
Aldosine,3TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC(=O)C1CCCC(C2=CN([Si](C)(C)C(C)(C)C)C(C(=O)O[Si](C)(C)C(C)(C)C)CC2)N13095.2Semi standard non polar33892256
Aldosine,3TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC(=O)C1CCCC(C2=CN([Si](C)(C)C(C)(C)C)C(C(=O)O[Si](C)(C)C(C)(C)C)CC2)N13025.6Standard non polar33892256
Aldosine,3TBDMS,isomer #3CC(C)(C)[Si](C)(C)OC(=O)C1CCC(C2CCCC(C(=O)O)N2[Si](C)(C)C(C)(C)C)=CN1[Si](C)(C)C(C)(C)C3116.3Semi standard non polar33892256
Aldosine,3TBDMS,isomer #3CC(C)(C)[Si](C)(C)OC(=O)C1CCC(C2CCCC(C(=O)O)N2[Si](C)(C)C(C)(C)C)=CN1[Si](C)(C)C(C)(C)C3020.5Standard non polar33892256
Aldosine,3TBDMS,isomer #4CC(C)(C)[Si](C)(C)OC(=O)C1CCCC(C2=CN([Si](C)(C)C(C)(C)C)C(C(=O)O)CC2)N1[Si](C)(C)C(C)(C)C3114.5Semi standard non polar33892256
Aldosine,3TBDMS,isomer #4CC(C)(C)[Si](C)(C)OC(=O)C1CCCC(C2=CN([Si](C)(C)C(C)(C)C)C(C(=O)O)CC2)N1[Si](C)(C)C(C)(C)C3034.5Standard non polar33892256
Aldosine,4TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)C1CCC(C2CCCC(C(=O)O[Si](C)(C)C(C)(C)C)N2[Si](C)(C)C(C)(C)C)=CN1[Si](C)(C)C(C)(C)C3300.1Semi standard non polar33892256
Aldosine,4TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC(=O)C1CCC(C2CCCC(C(=O)O[Si](C)(C)C(C)(C)C)N2[Si](C)(C)C(C)(C)C)=CN1[Si](C)(C)C(C)(C)C3227.1Standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Aldosine GC-MS (Non-derivatized) - 70eV, Positivesplash10-004i-1920000000-9598121ab51da7fde43f2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Aldosine GC-MS (2 TMS) - 70eV, Positivesplash10-001i-3192000000-5ef58f684d744e0ccf1c2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Aldosine GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Aldosine 10V, Positive-QTOFsplash10-0a4i-0190000000-d001626fda507f603c3d2016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Aldosine 20V, Positive-QTOFsplash10-0a4i-0890000000-ea4aa938410da8881da32016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Aldosine 40V, Positive-QTOFsplash10-03ei-2900000000-a1678d5d62555e26cb0e2016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Aldosine 10V, Negative-QTOFsplash10-0udi-0190000000-a7bb938ec1bbc3d1cc052016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Aldosine 20V, Negative-QTOFsplash10-0pb9-0590000000-7d957b91af85997032542016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Aldosine 40V, Negative-QTOFsplash10-07eo-4910000000-fc71073b0968201ed5c82016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Aldosine 10V, Positive-QTOFsplash10-0a4i-0090000000-a3bf448958a8f82935582021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Aldosine 20V, Positive-QTOFsplash10-0bt9-0970000000-f82d09b32ec6dbe35ffc2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Aldosine 40V, Positive-QTOFsplash10-03l0-2910000000-53579ce68f735b1679ad2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Aldosine 10V, Negative-QTOFsplash10-0udi-0090000000-760f1f998460637256152021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Aldosine 20V, Negative-QTOFsplash10-0udi-0090000000-6f1ea50a250b2dca9eb32021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Aldosine 40V, Negative-QTOFsplash10-001l-7900000000-5003f73f44a6a9c5f2332021-09-24Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-24Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
Biospecimen Locations
  • Blood
  • Urine
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodExpected but not QuantifiedNot QuantifiedAdult (>18 years old)BothAsthma details
UrineDetected but not QuantifiedNot QuantifiedAdult (>18 years old)BothAsthma details
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB016962
KNApSAcK IDNot Available
Chemspider ID28686448
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound57357510
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Nakamura F, Suyama K: An amino acid derived from aldol crosslink of elastin and collagen: structure, distribution, aging, and two models of hyperglycemia. Arch Biochem Biophys. 1996 Jan 15;325(2):167-73. [PubMed:8561494 ]
  2. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .