Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 23:27:53 UTC
Update Date2023-02-21 17:26:23 UTC
HMDB IDHMDB0038183
Secondary Accession Numbers
  • HMDB38183
Metabolite Identification
Common Name3-(4-Methyl-3-pentenyl)thiophene
Description3-(4-Methyl-3-pentenyl)thiophene belongs to the class of organic compounds known as heteroaromatic compounds. Heteroaromatic compounds are compounds containing an aromatic ring where a carbon atom is linked to an hetero atom. 3-(4-Methyl-3-pentenyl)thiophene has been detected, but not quantified in, alcoholic beverages. This could make 3-(4-methyl-3-pentenyl)thiophene a potential biomarker for the consumption of these foods. Based on a literature review very few articles have been published on 3-(4-Methyl-3-pentenyl)thiophene.
Structure
Data?1677000383
Synonyms
ValueSource
3-(4-Methylpent-3-enyl)thiopheneHMDB
Chemical FormulaC10H14S
Average Molecular Weight166.283
Monoisotopic Molecular Weight166.081621138
IUPAC Name3-(4-methylpent-3-en-1-yl)thiophene
Traditional Name3-(4-methylpent-3-en-1-yl)thiophene
CAS Registry Number62469-65-2
SMILES
CC(C)=CCCC1=CSC=C1
InChI Identifier
InChI=1S/C10H14S/c1-9(2)4-3-5-10-6-7-11-8-10/h4,6-8H,3,5H2,1-2H3
InChI KeyUAGFAMQTBLSQSU-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as heteroaromatic compounds. Heteroaromatic compounds are compounds containing an aromatic ring where a carbon atom is linked to an hetero atom.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassHeteroaromatic compounds
Sub ClassNot Available
Direct ParentHeteroaromatic compounds
Alternative Parents
Substituents
  • Heteroaromatic compound
  • Thiophene
  • Hydrocarbon derivative
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
Role
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.068 g/LALOGPS
logP4.07ALOGPS
logP3.93ChemAxon
logS-3.4ALOGPS
pKa (Strongest Basic)-7.3ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count0ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area0 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity52.01 m³·mol⁻¹ChemAxon
Polarizability19.85 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+138.03231661259
DarkChem[M-H]-132.24931661259
DeepCCS[M+H]+136.45430932474
DeepCCS[M-H]-132.96830932474
DeepCCS[M-2H]-170.16930932474
DeepCCS[M+Na]+145.70830932474
AllCCS[M+H]+132.832859911
AllCCS[M+H-H2O]+128.432859911
AllCCS[M+NH4]+136.832859911
AllCCS[M+Na]+138.032859911
AllCCS[M-H]-136.432859911
AllCCS[M+Na-2H]-137.732859911
AllCCS[M+HCOO]-139.332859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
3-(4-Methyl-3-pentenyl)thiopheneCC(C)=CCCC1=CSC=C11684.1Standard polar33892256
3-(4-Methyl-3-pentenyl)thiopheneCC(C)=CCCC1=CSC=C11250.4Standard non polar33892256
3-(4-Methyl-3-pentenyl)thiopheneCC(C)=CCCC1=CSC=C11258.4Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 3-(4-Methyl-3-pentenyl)thiophene GC-MS (Non-derivatized) - 70eV, Positivesplash10-0002-9200000000-1f1c533fba64525525ff2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-(4-Methyl-3-pentenyl)thiophene GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-(4-Methyl-3-pentenyl)thiophene 10V, Negative-QTOFsplash10-014i-0900000000-34c27e591be4eb74a8992016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-(4-Methyl-3-pentenyl)thiophene 20V, Negative-QTOFsplash10-014i-0900000000-19b712238a757045a3c82016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-(4-Methyl-3-pentenyl)thiophene 40V, Negative-QTOFsplash10-0a4i-9600000000-70e7234f6e67104f0cdc2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-(4-Methyl-3-pentenyl)thiophene 10V, Negative-QTOFsplash10-014i-0900000000-bebbf52954e96b1ac25f2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-(4-Methyl-3-pentenyl)thiophene 20V, Negative-QTOFsplash10-014i-0900000000-8732ac2899a6fa4066a42021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-(4-Methyl-3-pentenyl)thiophene 40V, Negative-QTOFsplash10-01qa-9800000000-797e8a4a4628e926eb402021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-(4-Methyl-3-pentenyl)thiophene 10V, Positive-QTOFsplash10-014i-0900000000-8114812dc552170af5a02016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-(4-Methyl-3-pentenyl)thiophene 20V, Positive-QTOFsplash10-014i-3900000000-42ce9268b16625b675202016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-(4-Methyl-3-pentenyl)thiophene 40V, Positive-QTOFsplash10-0ldi-9300000000-4cf9f520976898272fbf2016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-(4-Methyl-3-pentenyl)thiophene 10V, Positive-QTOFsplash10-03di-1900000000-864f1121282312d78d7e2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-(4-Methyl-3-pentenyl)thiophene 20V, Positive-QTOFsplash10-01tc-9700000000-be8392c1a4ec16f5f57d2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-(4-Methyl-3-pentenyl)thiophene 40V, Positive-QTOFsplash10-00p3-9100000000-434de61361c7450dd4cc2021-09-22Wishart LabView Spectrum

IR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+)2023-02-04FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+)2023-02-04FELIX labView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB017422
KNApSAcK IDNot Available
Chemspider ID492107
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound566107
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .