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Record Information

Version

5.0

Status

Expected but not Quantified

Creation Date

2012-09-12 01:55:05 UTC

Update Date

2022-03-07 02:56:34 UTC

HMDB ID

HMDB0040389

Secondary Accession Numbers

HMDB40389

Metabolite Identification

Common Name

Erinacine C

Description

Neoacrimarine B belongs to the class of organic compounds known as acridones. These are acridines containing a ketone group attached to the C9 carbon atom of the acridine moiety. Neoacrimarine B is an extremely weak basic (essentially neutral) compound (based on its pKa). Outside of the human body, Neoacrimarine B has been detected, but not quantified in, citrus. This could make neoacrimarine b a potential biomarker for the consumption of these foods.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv0541 05061311482D          

 31 35  0  0  0  0            999 V2000
    1.2510    0.1911    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6461    0.5001    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7287   -2.8213    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0288   -1.8571    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2960    0.5221    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6794   -0.0260    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6693   -1.4804    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0879   -2.1913    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5649   -2.4922    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3157   -2.1502    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5882    1.0532    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8257   -2.2037    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0377   -0.0571    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1090    0.3817    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2161   -0.8626    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7234   -0.8498    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1435   -1.4423    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9726   -1.1917    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6430   -0.7865    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5061   -0.3415    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8248   -0.8919    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1883   -1.1028    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5070   -1.6532    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8933   -2.0129    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3949   -1.3290    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4094    0.9739    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.9617   -1.3369    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.9608   -0.0251    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.0074   -2.3091    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.3243   -0.2360    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6888   -1.7587    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  6  5  1  0  0  0  0
  8  7  1  0  0  0  0
 10  9  1  0  0  0  0
 13  1  1  0  0  0  0
 13  2  1  0  0  0  0
 14  5  2  0  0  0  0
 14 11  1  0  0  0  0
 15  7  1  0  0  0  0
 15 13  1  0  0  0  0
 16  6  1  0  0  0  0
 17 12  1  0  0  0  0
 18 15  2  0  0  0  0
 18 16  1  0  0  0  0
 19 17  1  0  0  0  0
 20 14  1  0  0  0  0
 21 19  1  0  0  0  0
 22 20  1  0  0  0  0
 23 21  1  0  0  0  0
 24  3  1  0  0  0  0
 24  8  1  0  0  0  0
 24  9  1  0  0  0  0
 24 18  1  0  0  0  0
 25  4  1  0  0  0  0
 25 10  1  0  0  0  0
 25 16  1  0  0  0  0
 25 22  1  0  0  0  0
 26 11  1  0  0  0  0
 27 17  1  0  0  0  0
 28 19  1  0  0  0  0
 29 12  1  0  0  0  0
 29 23  1  0  0  0  0
 30 20  1  0  0  0  0
 30 21  1  0  0  0  0
 31 22  1  0  0  0  0
 31 23  1  0  0  0  0
M  END

HMDB0040389
     RDKit          3D
Erinacine C
 69 73  0  0  0  0  0  0  0  0999 V2000
   -2.5227   -0.2452    3.0171 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7429   -0.0550    2.2203 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2931    1.3521    2.5079 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6413   -0.1532    0.7304 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6282   -0.3513   -0.0828 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1684   -0.5611    0.1471 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8459   -2.0319    0.3306 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3639   -2.1740    1.1340 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4790   -1.4577    1.0451 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5015   -1.9063    2.0453 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7904   -0.8266    2.8678 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9339   -0.3564    0.2164 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8244   -0.7704   -0.8051 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4686    0.3154   -1.3409 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7817    1.6345   -1.0286 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2888    2.5552   -1.9738 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5862    2.8388   -1.5507 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4940    1.6428   -1.6098 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6734    2.0015   -0.9198 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9106    0.4400   -0.9474 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0963    0.4773    0.4255 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4335    1.4604   -1.2052 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9105    0.5572   -0.3237 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2852   -0.0943   -0.9714 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1975   -1.1668   -1.8820 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9906    0.9404   -1.8500 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2203    0.3396   -2.4613 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1021   -0.3517   -1.4868 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5110   -1.7364   -1.9259 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4237    0.4570   -1.4004 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9089   -0.0546   -0.0989 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.8899    0.6892    3.0177 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5726   -0.7491    2.5133 H   0  0  0  0  0  0  0  0  0  0  0  0
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    0.3415   -2.9555    1.8862 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2232   -2.8119    2.5771 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4369   -2.0851    1.4388 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6703   -0.8940    3.3013 H   0  0  0  0  0  0  0  0  0  0  0  0
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    3.4469    0.2238   -2.4575 H   0  0  0  0  0  0  0  0  0  0  0  0
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    5.0367    3.6818   -2.0862 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5100    3.1304   -0.4734 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8099    1.3922   -2.6455 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4425    2.1446    0.0492 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4442   -0.4583   -1.3300 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0926   -0.4580    0.7620 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.5947   -1.7020   -2.4374 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8865   -1.8929   -1.4618 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1663    1.8474   -1.2802 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2896    1.1761   -2.6795 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9105   -0.3562   -3.2958 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7537    1.1683   -2.9915 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9319   -2.0984   -2.8039 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.5771   -1.8075   -2.2222 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.6727    0.5668    0.3906 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
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  5  6  1  0
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 30 31  1  0
 31  4  1  0
 28  5  1  0
 24  6  1  0
 23 12  1  0
 20 14  1  0
  1 32  1  0
  1 33  1  0
  1 34  1  0
  2 35  1  0
  3 36  1  0
  3 37  1  0
  3 38  1  0
  6 39  1  0
  7 40  1  0
  7 41  1  0
  8 42  1  0
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 11 45  1  0
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 14 47  1  0
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 29 63  1  0
 29 64  1  0
 29 65  1  0
 30 66  1  0
 30 67  1  0
 31 68  1  0
 31 69  1  0
M  END


  Mrv0541 05061311482D          

 31 35  0  0  0  0            999 V2000
    1.2510    0.1911    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6461    0.5001    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7287   -2.8213    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0288   -1.8571    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2960    0.5221    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6794   -0.0260    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6693   -1.4804    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0879   -2.1913    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5649   -2.4922    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3157   -2.1502    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5882    1.0532    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8257   -2.2037    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0377   -0.0571    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1090    0.3817    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2161   -0.8626    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7234   -0.8498    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1435   -1.4423    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9726   -1.1917    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6430   -0.7865    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5061   -0.3415    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8248   -0.8919    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1883   -1.1028    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5070   -1.6532    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8933   -2.0129    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3949   -1.3290    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4094    0.9739    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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    7.0074   -2.3091    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.3243   -0.2360    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6888   -1.7587    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  6  5  1  0  0  0  0
  8  7  1  0  0  0  0
 10  9  1  0  0  0  0
 13  1  1  0  0  0  0
 13  2  1  0  0  0  0
 14  5  2  0  0  0  0
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 15  7  1  0  0  0  0
 15 13  1  0  0  0  0
 16  6  1  0  0  0  0
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 18 15  2  0  0  0  0
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 20 14  1  0  0  0  0
 21 19  1  0  0  0  0
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 25  4  1  0  0  0  0
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 25 16  1  0  0  0  0
 25 22  1  0  0  0  0
 26 11  1  0  0  0  0
 27 17  1  0  0  0  0
 28 19  1  0  0  0  0
 29 12  1  0  0  0  0
 29 23  1  0  0  0  0
 30 20  1  0  0  0  0
 30 21  1  0  0  0  0
 31 22  1  0  0  0  0
 31 23  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0040389

> <DATABASE_NAME>
hmdb

> <SMILES>
CC(C)C1=C2C3CC=C(CO)C4OC5C(O)C(O)COC5OC4C3(C)CCC2(C)CC1

> <INCHI_IDENTIFIER>
InChI=1S/C25H38O6/c1-13(2)15-7-8-24(3)9-10-25(4)16(18(15)24)6-5-14(11-26)20-22(25)31-23-21(30-20)19(28)17(27)12-29-23/h5,13,16-17,19-23,26-28H,6-12H2,1-4H3

> <INCHI_KEY>
DMPGFSQMXITJPT-UHFFFAOYSA-N

> <FORMULA>
C25H38O6

> <MOLECULAR_WEIGHT>
434.5656

> <EXACT_MASS>
434.266838948

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_AVERAGE_POLARIZABILITY>
48.70213006902053

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
13-(hydroxymethyl)-2,5-dimethyl-8-(propan-2-yl)-15,20,22-trioxapentacyclo[12.8.0.0²,¹⁰.0⁵,⁹.0¹⁶,²¹]docosa-8,12-diene-17,18-diol

> <ALOGPS_LOGP>
2.50

> <JCHEM_LOGP>
2.3078391346666667

> <ALOGPS_LOGS>
-3.64

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.265070178350502

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.826333856947972

> <JCHEM_PKA_STRONGEST_BASIC>
-2.7616621121864258

> <JCHEM_POLAR_SURFACE_AREA>
88.38000000000001

> <JCHEM_REFRACTIVITY>
116.66879999999996

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
9.90e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
13-(hydroxymethyl)-8-isopropyl-2,5-dimethyl-15,20,22-trioxapentacyclo[12.8.0.0²,¹⁰.0⁵,⁹.0¹⁶,²¹]docosa-8,12-diene-17,18-diol

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0040389
     RDKit          3D
Erinacine C
 69 73  0  0  0  0  0  0  0  0999 V2000
   -2.5227   -0.2452    3.0171 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7429   -0.0550    2.2203 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2931    1.3521    2.5079 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6413   -0.1532    0.7304 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6282   -0.3513   -0.0828 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1684   -0.5611    0.1471 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8459   -2.0319    0.3306 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3639   -2.1740    1.1340 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4790   -1.4577    1.0451 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5015   -1.9063    2.0453 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7904   -0.8266    2.8678 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9339   -0.3564    0.2164 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8244   -0.7704   -0.8051 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4686    0.3154   -1.3409 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7817    1.6345   -1.0286 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2888    2.5552   -1.9738 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5862    2.8388   -1.5507 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4940    1.6428   -1.6098 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6734    2.0015   -0.9198 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9106    0.4400   -0.9474 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0963    0.4773    0.4255 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4335    1.4604   -1.2052 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9105    0.5572   -0.3237 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2852   -0.0943   -0.9714 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1975   -1.1668   -1.8820 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9906    0.9404   -1.8500 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2203    0.3396   -2.4613 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1021   -0.3517   -1.4868 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5110   -1.7364   -1.9259 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4237    0.4570   -1.4004 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9089   -0.0546   -0.0989 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7980   -0.3117    4.1387 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9302   -1.1418    2.8511 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8899    0.6892    3.0177 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5726   -0.7491    2.5133 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7126    2.1155    1.9497 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1138    1.5609    3.5917 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3644    1.3603    2.3108 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8934   -0.0863    1.1093 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8246   -2.5924   -0.6266 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6981   -2.4708    0.8920 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3415   -2.9555    1.8862 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2232   -2.8119    2.5771 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4369   -2.0851    1.4388 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6703   -0.8940    3.3013 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5936    0.2880    0.8772 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4469    0.2238   -2.4575 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0712    2.0429   -0.0438 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0367    3.6818   -2.0862 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5100    3.1304   -0.4734 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8099    1.3922   -2.6455 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4425    2.1446    0.0492 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4442   -0.4583   -1.3300 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0926   -0.4580    0.7620 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4955    1.1535    0.5427 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7841   -0.6353   -2.6916 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5947   -1.7020   -2.4374 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8865   -1.8929   -1.4618 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1663    1.8474   -1.2802 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2896    1.1761   -2.6795 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9105   -0.3562   -3.2958 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7537    1.1683   -2.9915 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9319   -2.0984   -2.8039 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3946   -2.4150   -1.0520 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5771   -1.8075   -2.2222 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2102    1.5343   -1.4170 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0875    0.1902   -2.2200 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3490   -1.0632   -0.2312 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6727    0.5668    0.3906 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  1  0
  9 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 18 20  1  0
 20 21  1  0
 15 22  1  0
 22 23  1  0
 23 24  1  0
 24 25  1  0
 24 26  1  0
 26 27  1  0
 27 28  1  0
 28 29  1  0
 28 30  1  0
 30 31  1  0
 31  4  1  0
 28  5  1  0
 24  6  1  0
 23 12  1  0
 20 14  1  0
  1 32  1  0
  1 33  1  0
  1 34  1  0
  2 35  1  0
  3 36  1  0
  3 37  1  0
  3 38  1  0
  6 39  1  0
  7 40  1  0
  7 41  1  0
  8 42  1  0
 10 43  1  0
 10 44  1  0
 11 45  1  0
 12 46  1  0
 14 47  1  0
 15 48  1  0
 17 49  1  0
 17 50  1  0
 18 51  1  0
 19 52  1  0
 20 53  1  0
 21 54  1  0
 23 55  1  0
 25 56  1  0
 25 57  1  0
 25 58  1  0
 26 59  1  0
 26 60  1  0
 27 61  1  0
 27 62  1  0
 29 63  1  0
 29 64  1  0
 29 65  1  0
 30 66  1  0
 30 67  1  0
 31 68  1  0
 31 69  1  0
M  END

HEADER    PROTEIN                                 06-MAY-13   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-MAY-13         0                                  
HETATM    1  C   UNK     0       2.335   0.357   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       4.939   0.934   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.094  -5.266   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       9.387  -3.467   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       8.019   0.975   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.868  -0.049   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.116  -2.763   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       3.897  -4.090   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       6.654  -4.652   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       8.056  -4.014   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      10.431   1.966   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      14.608  -4.114   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.804  -0.107   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       9.537   0.713   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.137  -1.610   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       6.950  -1.586   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      15.201  -2.692   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       5.549  -2.225   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      14.267  -1.468   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      10.278  -0.637   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      12.740  -1.665   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       9.685  -2.059   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      12.146  -3.086   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       5.401  -3.757   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       8.204  -2.481   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      11.964   1.818   0.000  0.00  0.00           O+0
HETATM   27  O   UNK     0      16.729  -2.496   0.000  0.00  0.00           O+0
HETATM   28  O   UNK     0      14.860  -0.047   0.000  0.00  0.00           O+0
HETATM   29  O   UNK     0      13.080  -4.310   0.000  0.00  0.00           O+0
HETATM   30  O   UNK     0      11.805  -0.441   0.000  0.00  0.00           O+0
HETATM   31  O   UNK     0      10.619  -3.283   0.000  0.00  0.00           O+0
CONECT    1   13                                                            
CONECT    2   13                                                            
CONECT    3   24                                                            
CONECT    4   25                                                            
CONECT    5    6   14                                                       
CONECT    6    5   16                                                       
CONECT    7    8   15                                                       
CONECT    8    7   24                                                       
CONECT    9   10   24                                                       
CONECT   10    9   25                                                       
CONECT   11   14   26                                                       
CONECT   12   17   29                                                       
CONECT   13    1    2   15                                                  
CONECT   14    5   11   20                                                  
CONECT   15    7   13   18                                                  
CONECT   16    6   18   25                                                  
CONECT   17   12   19   27                                                  
CONECT   18   15   16   24                                                  
CONECT   19   17   21   28                                                  
CONECT   20   14   22   30                                                  
CONECT   21   19   23   30                                                  
CONECT   22   20   25   31                                                  
CONECT   23   21   29   31                                                  
CONECT   24    3    8    9   18                                             
CONECT   25    4   10   16   22                                             
CONECT   26   11                                                            
CONECT   27   17                                                            
CONECT   28   19                                                            
CONECT   29   12   23                                                       
CONECT   30   20   21                                                       
CONECT   31   22   23                                                       
MASTER        0    0    0    0    0    0    0    0   31    0   70    0
END

COMPND    HMDB0040389
HETATM    1  C1  UNL     1      -2.523  -0.245   3.017  1.00  0.00           C  
HETATM    2  C2  UNL     1      -3.743  -0.055   2.220  1.00  0.00           C  
HETATM    3  C3  UNL     1      -4.293   1.352   2.508  1.00  0.00           C  
HETATM    4  C4  UNL     1      -3.641  -0.153   0.730  1.00  0.00           C  
HETATM    5  C5  UNL     1      -2.628  -0.351  -0.083  1.00  0.00           C  
HETATM    6  C6  UNL     1      -1.168  -0.561   0.147  1.00  0.00           C  
HETATM    7  C7  UNL     1      -0.846  -2.032   0.331  1.00  0.00           C  
HETATM    8  C8  UNL     1       0.364  -2.174   1.134  1.00  0.00           C  
HETATM    9  C9  UNL     1       1.479  -1.458   1.045  1.00  0.00           C  
HETATM   10  C10 UNL     1       2.501  -1.906   2.045  1.00  0.00           C  
HETATM   11  O1  UNL     1       2.790  -0.827   2.868  1.00  0.00           O  
HETATM   12  C11 UNL     1       1.934  -0.356   0.216  1.00  0.00           C  
HETATM   13  O2  UNL     1       2.824  -0.770  -0.805  1.00  0.00           O  
HETATM   14  C12 UNL     1       3.469   0.315  -1.341  1.00  0.00           C  
HETATM   15  C13 UNL     1       2.782   1.634  -1.029  1.00  0.00           C  
HETATM   16  O3  UNL     1       3.289   2.555  -1.974  1.00  0.00           O  
HETATM   17  C14 UNL     1       4.586   2.839  -1.551  1.00  0.00           C  
HETATM   18  C15 UNL     1       5.494   1.643  -1.610  1.00  0.00           C  
HETATM   19  O4  UNL     1       6.673   2.001  -0.920  1.00  0.00           O  
HETATM   20  C16 UNL     1       4.911   0.440  -0.947  1.00  0.00           C  
HETATM   21  O5  UNL     1       5.096   0.477   0.425  1.00  0.00           O  
HETATM   22  O6  UNL     1       1.433   1.460  -1.205  1.00  0.00           O  
HETATM   23  C17 UNL     1       0.911   0.557  -0.324  1.00  0.00           C  
HETATM   24  C18 UNL     1      -0.285  -0.094  -0.971  1.00  0.00           C  
HETATM   25  C19 UNL     1       0.198  -1.167  -1.882  1.00  0.00           C  
HETATM   26  C20 UNL     1      -0.991   0.940  -1.850  1.00  0.00           C  
HETATM   27  C21 UNL     1      -2.220   0.340  -2.461  1.00  0.00           C  
HETATM   28  C22 UNL     1      -3.102  -0.352  -1.487  1.00  0.00           C  
HETATM   29  C23 UNL     1      -3.511  -1.736  -1.926  1.00  0.00           C  
HETATM   30  C24 UNL     1      -4.424   0.457  -1.400  1.00  0.00           C  
HETATM   31  C25 UNL     1      -4.909  -0.055  -0.099  1.00  0.00           C  
HETATM   32  H1  UNL     1      -2.798  -0.312   4.139  1.00  0.00           H  
HETATM   33  H2  UNL     1      -1.930  -1.142   2.851  1.00  0.00           H  
HETATM   34  H3  UNL     1      -1.890   0.689   3.018  1.00  0.00           H  
HETATM   35  H4  UNL     1      -4.573  -0.749   2.513  1.00  0.00           H  
HETATM   36  H5  UNL     1      -3.713   2.115   1.950  1.00  0.00           H  
HETATM   37  H6  UNL     1      -4.114   1.561   3.592  1.00  0.00           H  
HETATM   38  H7  UNL     1      -5.364   1.360   2.311  1.00  0.00           H  
HETATM   39  H8  UNL     1      -0.893  -0.086   1.109  1.00  0.00           H  
HETATM   40  H9  UNL     1      -0.825  -2.592  -0.627  1.00  0.00           H  
HETATM   41  H10 UNL     1      -1.698  -2.471   0.892  1.00  0.00           H  
HETATM   42  H11 UNL     1       0.341  -2.955   1.886  1.00  0.00           H  
HETATM   43  H12 UNL     1       2.223  -2.812   2.577  1.00  0.00           H  
HETATM   44  H13 UNL     1       3.437  -2.085   1.439  1.00  0.00           H  
HETATM   45  H14 UNL     1       3.670  -0.894   3.301  1.00  0.00           H  
HETATM   46  H15 UNL     1       2.594   0.288   0.877  1.00  0.00           H  
HETATM   47  H16 UNL     1       3.447   0.224  -2.458  1.00  0.00           H  
HETATM   48  H17 UNL     1       3.071   2.043  -0.044  1.00  0.00           H  
HETATM   49  H18 UNL     1       5.037   3.682  -2.086  1.00  0.00           H  
HETATM   50  H19 UNL     1       4.510   3.130  -0.473  1.00  0.00           H  
HETATM   51  H20 UNL     1       5.810   1.392  -2.645  1.00  0.00           H  
HETATM   52  H21 UNL     1       6.442   2.145   0.049  1.00  0.00           H  
HETATM   53  H22 UNL     1       5.444  -0.458  -1.330  1.00  0.00           H  
HETATM   54  H23 UNL     1       5.093  -0.458   0.762  1.00  0.00           H  
HETATM   55  H24 UNL     1       0.496   1.154   0.543  1.00  0.00           H  
HETATM   56  H25 UNL     1       0.784  -0.635  -2.692  1.00  0.00           H  
HETATM   57  H26 UNL     1      -0.595  -1.702  -2.437  1.00  0.00           H  
HETATM   58  H27 UNL     1       0.886  -1.893  -1.462  1.00  0.00           H  
HETATM   59  H28 UNL     1      -1.166   1.847  -1.280  1.00  0.00           H  
HETATM   60  H29 UNL     1      -0.290   1.176  -2.680  1.00  0.00           H  
HETATM   61  H30 UNL     1      -1.910  -0.356  -3.296  1.00  0.00           H  
HETATM   62  H31 UNL     1      -2.754   1.168  -2.991  1.00  0.00           H  
HETATM   63  H32 UNL     1      -2.932  -2.098  -2.804  1.00  0.00           H  
HETATM   64  H33 UNL     1      -3.395  -2.415  -1.052  1.00  0.00           H  
HETATM   65  H34 UNL     1      -4.577  -1.808  -2.222  1.00  0.00           H  
HETATM   66  H35 UNL     1      -4.210   1.534  -1.417  1.00  0.00           H  
HETATM   67  H36 UNL     1      -5.088   0.190  -2.220  1.00  0.00           H  
HETATM   68  H37 UNL     1      -5.349  -1.063  -0.231  1.00  0.00           H  
HETATM   69  H38 UNL     1      -5.673   0.567   0.391  1.00  0.00           H  
CONECT    1    2   32   33   34
CONECT    2    3    4   35
CONECT    3   36   37   38
CONECT    4    5    5   31
CONECT    5    6   28
CONECT    6    7   24   39
CONECT    7    8   40   41
CONECT    8    9    9   42
CONECT    9   10   12
CONECT   10   11   43   44
CONECT   11   45
CONECT   12   13   23   46
CONECT   13   14
CONECT   14   15   20   47
CONECT   15   16   22   48
CONECT   16   17
CONECT   17   18   49   50
CONECT   18   19   20   51
CONECT   19   52
CONECT   20   21   53
CONECT   21   54
CONECT   22   23
CONECT   23   24   55
CONECT   24   25   26
CONECT   25   56   57   58
CONECT   26   27   59   60
CONECT   27   28   61   62
CONECT   28   29   30
CONECT   29   63   64   65
CONECT   30   31   66   67
CONECT   31   68   69
END

HMDB0040389
     RDKit          3D
Erinacine C
 69 73  0  0  0  0  0  0  0  0999 V2000
   -2.5227   -0.2452    3.0171 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7429   -0.0550    2.2203 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2931    1.3521    2.5079 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6413   -0.1532    0.7304 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6282   -0.3513   -0.0828 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1684   -0.5611    0.1471 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8459   -2.0319    0.3306 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3639   -2.1740    1.1340 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4790   -1.4577    1.0451 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5015   -1.9063    2.0453 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7904   -0.8266    2.8678 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9339   -0.3564    0.2164 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8244   -0.7704   -0.8051 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4686    0.3154   -1.3409 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7817    1.6345   -1.0286 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2888    2.5552   -1.9738 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5862    2.8388   -1.5507 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4940    1.6428   -1.6098 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6734    2.0015   -0.9198 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9106    0.4400   -0.9474 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0963    0.4773    0.4255 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4335    1.4604   -1.2052 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9105    0.5572   -0.3237 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2852   -0.0943   -0.9714 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1975   -1.1668   -1.8820 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9906    0.9404   -1.8500 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2203    0.3396   -2.4613 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1021   -0.3517   -1.4868 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5110   -1.7364   -1.9259 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4237    0.4570   -1.4004 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9089   -0.0546   -0.0989 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7980   -0.3117    4.1387 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9302   -1.1418    2.8511 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8899    0.6892    3.0177 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5726   -0.7491    2.5133 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7126    2.1155    1.9497 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1138    1.5609    3.5917 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3644    1.3603    2.3108 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8934   -0.0863    1.1093 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8246   -2.5924   -0.6266 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6981   -2.4708    0.8920 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3415   -2.9555    1.8862 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2232   -2.8119    2.5771 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4369   -2.0851    1.4388 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6703   -0.8940    3.3013 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5936    0.2880    0.8772 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4469    0.2238   -2.4575 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0712    2.0429   -0.0438 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0367    3.6818   -2.0862 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5100    3.1304   -0.4734 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8099    1.3922   -2.6455 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4425    2.1446    0.0492 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4442   -0.4583   -1.3300 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0926   -0.4580    0.7620 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4955    1.1535    0.5427 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7841   -0.6353   -2.6916 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5947   -1.7020   -2.4374 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8865   -1.8929   -1.4618 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1663    1.8474   -1.2802 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2896    1.1761   -2.6795 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9105   -0.3562   -3.2958 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7537    1.1683   -2.9915 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9319   -2.0984   -2.8039 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3946   -2.4150   -1.0520 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5771   -1.8075   -2.2222 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2102    1.5343   -1.4170 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0875    0.1902   -2.2200 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3490   -1.0632   -0.2312 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6727    0.5668    0.3906 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  1  0
  9 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 18 20  1  0
 20 21  1  0
 15 22  1  0
 22 23  1  0
 23 24  1  0
 24 25  1  0
 24 26  1  0
 26 27  1  0
 27 28  1  0
 28 29  1  0
 28 30  1  0
 30 31  1  0
 31  4  1  0
 28  5  1  0
 24  6  1  0
 23 12  1  0
 20 14  1  0
  1 32  1  0
  1 33  1  0
  1 34  1  0
  2 35  1  0
  3 36  1  0
  3 37  1  0
  3 38  1  0
  6 39  1  0
  7 40  1  0
  7 41  1  0
  8 42  1  0
 10 43  1  0
 10 44  1  0
 11 45  1  0
 12 46  1  0
 14 47  1  0
 15 48  1  0
 17 49  1  0
 17 50  1  0
 18 51  1  0
 19 52  1  0
 20 53  1  0
 21 54  1  0
 23 55  1  0
 25 56  1  0
 25 57  1  0
 25 58  1  0
 26 59  1  0
 26 60  1  0
 27 61  1  0
 27 62  1  0
 29 63  1  0
 29 64  1  0
 29 65  1  0
 30 66  1  0
 30 67  1  0
 31 68  1  0
 31 69  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
Apadoline	HMDB
Erinacine C	MeSH

Chemical Formula

C₂₅H₃₈O₆

Average Molecular Weight

434.5656

Monoisotopic Molecular Weight

434.266838948

IUPAC Name

13-(hydroxymethyl)-2,5-dimethyl-8-(propan-2-yl)-15,20,22-trioxapentacyclo[12.8.0.0²,¹⁰.0⁵,⁹.0¹⁶,²¹]docosa-8,12-diene-17,18-diol

Traditional Name

13-(hydroxymethyl)-8-isopropyl-2,5-dimethyl-15,20,22-trioxapentacyclo[12.8.0.0²,¹⁰.0⁵,⁹.0¹⁶,²¹]docosa-8,12-diene-17,18-diol

CAS Registry Number

156101-09-6

SMILES

CC(C)C1=C2C3CC=C(CO)C4OC5C(O)C(O)COC5OC4C3(C)CCC2(C)CC1

InChI Identifier

InChI=1S/C25H38O6/c1-13(2)15-7-8-24(3)9-10-25(4)16(18(15)24)6-5-14(11-26)20-22(25)31-23-21(30-20)19(28)17(27)12-29-23/h5,13,16-17,19-23,26-28H,6-12H2,1-4H3

InChI Key

DMPGFSQMXITJPT-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as acridones. These are acridines containing a ketone group attached to the C9 carbon atom of the acridine moiety.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Quinolines and derivatives

Sub Class

Benzoquinolines

Direct Parent

Acridones

Alternative Parents

Substituents

Acridone
Pyranocoumarin
Linear pyranocoumarin
Pyranochromene
2,2-dimethyl-1-benzopyran
Coumarin
Dihydroquinolone
Chromane
Benzopyran
Dihydroquinoline
1-benzopyran
Anisole
Pyranone
Alkyl aryl ether
1-hydroxy-2-unsubstituted benzenoid
Benzenoid
Pyridine
Pyran
Heteroaromatic compound
Vinylogous amide
Vinylogous acid
Lactone
Oxacycle
Azacycle
Ether
Hydrocarbon derivative
Organic oxygen compound
Organonitrogen compound
Organooxygen compound
Organic nitrogen compound
Organopnictogen compound
Organic oxide
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Cell membrane (HMDB: HMDB0040389)

Cellular substructure

Route of exposure

Enteral

Ingestion (HMDB: HMDB0040389)

Source

Endogenous

Endogenous (HMDB: HMDB0040389)

Plant

Plant (HMDB: HMDB0040389)

Animal

Animal (HMDB: HMDB0040389)

Exogenous

Food

Food (HMDB: HMDB0040389)

Vegetable

Mushroom

Process

Naturally occurring process

Biological process

Chemical reaction

Lipid peroxidation (HMDB: HMDB0040389)

Biochemical process

Fatty acid metabolism (HMDB: HMDB0040389)

Cellular process

Cell signaling (HMDB: HMDB0040389)

Biochemical pathway

Lipid metabolism pathway (HMDB: HMDB0040389)

Role

Biological role

Membrane stabilizer (HMDB: HMDB0040389)

Nutrient

Nutrient (HMDB: HMDB0040389)

Industrial application

Manufacturing industry

Material processing agent

Fluid processing agent

Surfactant

Surfactant (HMDB: HMDB0040389)

Emulsifier (HMDB: HMDB0040389)

Physical Properties

State

Solid

Experimental Molecular Properties

Property	Value	Reference
Melting Point	115 - 118 °C	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
Water Solubility	0.099 g/L	ALOGPS
logP	2.5	ALOGPS
logP	2.31	ChemAxon
logS	-3.6	ALOGPS
pKa (Strongest Acidic)	12.83	ChemAxon
pKa (Strongest Basic)	-2.8	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	88.38 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	116.67 m³·mol⁻¹	ChemAxon
Polarizability	48.7 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DarkChem	[M+H]+	199.795	31661259
DarkChem	[M-H]-	196.372	31661259
DeepCCS	[M+H]+	207.045	30932474
DeepCCS	[M-H]-	204.687	30932474
DeepCCS	[M-2H]-	238.852	30932474
DeepCCS	[M+Na]+	214.081	30932474
AllCCS	[M+H]+	207.9	32859911
AllCCS	[M+H-H2O]+	205.9	32859911
AllCCS	[M+NH4]+	209.7	32859911
AllCCS	[M+Na]+	210.2	32859911
AllCCS	[M-H]-	201.7	32859911
AllCCS	[M+Na-2H]-	202.8	32859911
AllCCS	[M+HCOO]-	204.1	32859911

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
Erinacine C	CC(C)C1=C2C3CC=C(CO)C4OC5C(O)C(O)COC5OC4C3(C)CCC2(C)CC1	3096.9	Standard polar	33892256
Erinacine C	CC(C)C1=C2C3CC=C(CO)C4OC5C(O)C(O)COC5OC4C3(C)CCC2(C)CC1	3275.6	Standard non polar	33892256
Erinacine C	CC(C)C1=C2C3CC=C(CO)C4OC5C(O)C(O)COC5OC4C3(C)CCC2(C)CC1	3295.7	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
Erinacine C,1TMS,isomer #1	CC(C)C1=C2C3CC=C(CO[Si](C)(C)C)C4OC5C(OCC(O)C5O)OC4C3(C)CCC2(C)CC1	3520.9	Semi standard non polar	33892256
Erinacine C,1TMS,isomer #2	CC(C)C1=C2C3CC=C(CO)C4OC5C(OCC(O)C5O[Si](C)(C)C)OC4C3(C)CCC2(C)CC1	3548.7	Semi standard non polar	33892256
Erinacine C,1TMS,isomer #3	CC(C)C1=C2C3CC=C(CO)C4OC5C(OCC(O[Si](C)(C)C)C5O)OC4C3(C)CCC2(C)CC1	3556.7	Semi standard non polar	33892256
Erinacine C,2TMS,isomer #1	CC(C)C1=C2C3CC=C(CO[Si](C)(C)C)C4OC5C(OCC(O[Si](C)(C)C)C5O)OC4C3(C)CCC2(C)CC1	3514.9	Semi standard non polar	33892256
Erinacine C,2TMS,isomer #2	CC(C)C1=C2C3CC=C(CO[Si](C)(C)C)C4OC5C(OCC(O)C5O[Si](C)(C)C)OC4C3(C)CCC2(C)CC1	3493.4	Semi standard non polar	33892256
Erinacine C,2TMS,isomer #3	CC(C)C1=C2C3CC=C(CO)C4OC5C(OCC(O[Si](C)(C)C)C5O[Si](C)(C)C)OC4C3(C)CCC2(C)CC1	3570.6	Semi standard non polar	33892256
Erinacine C,3TMS,isomer #1	CC(C)C1=C2C3CC=C(CO[Si](C)(C)C)C4OC5C(OCC(O[Si](C)(C)C)C5O[Si](C)(C)C)OC4C3(C)CCC2(C)CC1	3515.1	Semi standard non polar	33892256
Erinacine C,1TBDMS,isomer #1	CC(C)C1=C2C3CC=C(CO[Si](C)(C)C(C)(C)C)C4OC5C(OCC(O)C5O)OC4C3(C)CCC2(C)CC1	3774.5	Semi standard non polar	33892256
Erinacine C,1TBDMS,isomer #2	CC(C)C1=C2C3CC=C(CO)C4OC5C(OCC(O)C5O[Si](C)(C)C(C)(C)C)OC4C3(C)CCC2(C)CC1	3772.5	Semi standard non polar	33892256
Erinacine C,1TBDMS,isomer #3	CC(C)C1=C2C3CC=C(CO)C4OC5C(OCC(O[Si](C)(C)C(C)(C)C)C5O)OC4C3(C)CCC2(C)CC1	3785.7	Semi standard non polar	33892256
Erinacine C,2TBDMS,isomer #1	CC(C)C1=C2C3CC=C(CO[Si](C)(C)C(C)(C)C)C4OC5C(OCC(O[Si](C)(C)C(C)(C)C)C5O)OC4C3(C)CCC2(C)CC1	3987.3	Semi standard non polar	33892256
Erinacine C,2TBDMS,isomer #2	CC(C)C1=C2C3CC=C(CO[Si](C)(C)C(C)(C)C)C4OC5C(OCC(O)C5O[Si](C)(C)C(C)(C)C)OC4C3(C)CCC2(C)CC1	3969.0	Semi standard non polar	33892256
Erinacine C,2TBDMS,isomer #3	CC(C)C1=C2C3CC=C(CO)C4OC5C(OCC(O[Si](C)(C)C(C)(C)C)C5O[Si](C)(C)C(C)(C)C)OC4C3(C)CCC2(C)CC1	4023.4	Semi standard non polar	33892256
Erinacine C,3TBDMS,isomer #1	CC(C)C1=C2C3CC=C(CO[Si](C)(C)C(C)(C)C)C4OC5C(OCC(O[Si](C)(C)C(C)(C)C)C5O[Si](C)(C)C(C)(C)C)OC4C3(C)CCC2(C)CC1	4212.6	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - Erinacine C GC-MS (Non-derivatized) - 70eV, Positive	splash10-0uxr-3519700000-4fe3dca763ffcf64c3e4	2017-09-01	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Erinacine C GC-MS (3 TMS) - 70eV, Positive	splash10-000i-1523019000-b89c70abea00b3e06ef0	2017-10-06	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Erinacine C GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Erinacine C 10V, Positive-QTOF	splash10-014r-0112900000-fee1936480993d2540fe	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Erinacine C 20V, Positive-QTOF	splash10-014r-1191300000-861d57a1c26abd46801a	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Erinacine C 40V, Positive-QTOF	splash10-0pbi-9473000000-2cdb4ee4bc635ea7825b	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Erinacine C 10V, Negative-QTOF	splash10-001i-0000900000-87a16dd2481a3867493b	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Erinacine C 20V, Negative-QTOF	splash10-0159-3912500000-c786162a44f509988311	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Erinacine C 40V, Negative-QTOF	splash10-000f-9110000000-d3d2b15dcbfcaa3adb4a	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Erinacine C 10V, Positive-QTOF	splash10-000i-0000900000-164367b01a8c6d6dd295	2021-09-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Erinacine C 20V, Positive-QTOF	splash10-000i-2537900000-71259326bdf00553d598	2021-09-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Erinacine C 40V, Positive-QTOF	splash10-0079-5912000000-e40655359d61a4998fec	2021-09-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Erinacine C 10V, Negative-QTOF	splash10-001i-0000900000-0a4df791b27f80f1b510	2021-09-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Erinacine C 20V, Negative-QTOF	splash10-001i-0003900000-5afdfd6a04d027ffd7ef	2021-09-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Erinacine C 40V, Negative-QTOF	splash10-0zmu-1029400000-ecba92b7c7528ef4c0b9	2021-09-25	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Cytoplasm
Extracellular
Membrane

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB020117

KNApSAcK ID

C00019981

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

102277789

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
(). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.

Showing metabocard for Erinacine C (HMDB0040389)

MOL for HMDB0040389 (Erinacine C)

3D MOL for HMDB0040389 (Erinacine C)

3D SDF for HMDB0040389 (Erinacine C)

3D-SDF for HMDB0040389 (Erinacine C)

PDB for HMDB0040389 (Erinacine C)

3D PDB for HMDB0040389 (Erinacine C)

SMILES for HMDB0040389 (Erinacine C)

INCHI for HMDB0040389 (Erinacine C)

Structure for HMDB0040389 (Erinacine C)

3D Structure for HMDB0040389 (Erinacine C)

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra

MS/MS Spectra