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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-12 02:19:35 UTC
Update Date2022-03-07 02:56:43 UTC
HMDB IDHMDB0040749
Secondary Accession Numbers
  • HMDB40749
Metabolite Identification
Common Name4-Methoxy-3-geranylgeranyl-1,2-dihydroxybenzene
Description4-Methoxy-3-geranylgeranyl-1,2-dihydroxybenzene belongs to the class of organic compounds known as diterpenoids. These are terpene compounds formed by four isoprene units. Based on a literature review a small amount of articles have been published on 4-Methoxy-3-geranylgeranyl-1,2-dihydroxybenzene.
Structure
Data?1563863584
SynonymsNot Available
Chemical FormulaC27H40O3
Average Molecular Weight412.6047
Monoisotopic Molecular Weight412.297745146
IUPAC Name4-methoxy-3-[(2Z,6E,10E)-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraen-1-yl]benzene-1,2-diol
Traditional Name4-methoxy-3-[(2Z,6E,10E)-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraen-1-yl]benzene-1,2-diol
CAS Registry Number126398-83-2
SMILES
COC1=C(C\C=C(\C)CC\C=C(/C)CC\C=C(/C)CCC=C(C)C)C(O)=C(O)C=C1
InChI Identifier
InChI=1S/C27H40O3/c1-20(2)10-7-11-21(3)12-8-13-22(4)14-9-15-23(5)16-17-24-26(30-6)19-18-25(28)27(24)29/h10,12,14,16,18-19,28-29H,7-9,11,13,15,17H2,1-6H3/b21-12+,22-14+,23-16-
InChI KeyJGFQHGDOQGIOND-DCVNSYBLSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as diterpenoids. These are terpene compounds formed by four isoprene units.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassDiterpenoids
Direct ParentDiterpenoids
Alternative Parents
Substituents
  • Diterpenoid
  • Methoxyphenol
  • 4-alkoxyphenol
  • Anisole
  • Catechol
  • Phenoxy compound
  • Phenol ether
  • Methoxybenzene
  • Phenol
  • 1-hydroxy-4-unsubstituted benzenoid
  • Alkyl aryl ether
  • 1-hydroxy-2-unsubstituted benzenoid
  • Monocyclic benzene moiety
  • Benzenoid
  • Ether
  • Organooxygen compound
  • Hydrocarbon derivative
  • Organic oxygen compound
  • Aromatic homomonocyclic compound
Molecular FrameworkAromatic homomonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Process
Role
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.0015 g/LALOGPS
logP7.47ALOGPS
logP7.92ChemAxon
logS-5.4ALOGPS
pKa (Strongest Acidic)9.27ChemAxon
pKa (Strongest Basic)-4.8ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area49.69 ŲChemAxon
Rotatable Bond Count12ChemAxon
Refractivity132.13 m³·mol⁻¹ChemAxon
Polarizability50.63 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+211.22230932474
DeepCCS[M-H]-208.86430932474
DeepCCS[M-2H]-242.06830932474
DeepCCS[M+Na]+217.31530932474
AllCCS[M+H]+211.432859911
AllCCS[M+H-H2O]+209.032859911
AllCCS[M+NH4]+213.632859911
AllCCS[M+Na]+214.232859911
AllCCS[M-H]-201.632859911
AllCCS[M+Na-2H]-202.932859911
AllCCS[M+HCOO]-204.532859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
4-Methoxy-3-geranylgeranyl-1,2-dihydroxybenzeneCOC1=C(C\C=C(\C)CC\C=C(/C)CC\C=C(/C)CCC=C(C)C)C(O)=C(O)C=C14392.9Standard polar33892256
4-Methoxy-3-geranylgeranyl-1,2-dihydroxybenzeneCOC1=C(C\C=C(\C)CC\C=C(/C)CC\C=C(/C)CCC=C(C)C)C(O)=C(O)C=C13098.2Standard non polar33892256
4-Methoxy-3-geranylgeranyl-1,2-dihydroxybenzeneCOC1=C(C\C=C(\C)CC\C=C(/C)CC\C=C(/C)CCC=C(C)C)C(O)=C(O)C=C13208.5Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
4-Methoxy-3-geranylgeranyl-1,2-dihydroxybenzene,1TMS,isomer #1COC1=CC=C(O)C(O[Si](C)(C)C)=C1C/C=C(/C)CC/C=C(\C)CC/C=C(\C)CCC=C(C)C3122.8Semi standard non polar33892256
4-Methoxy-3-geranylgeranyl-1,2-dihydroxybenzene,1TMS,isomer #2COC1=CC=C(O[Si](C)(C)C)C(O)=C1C/C=C(/C)CC/C=C(\C)CC/C=C(\C)CCC=C(C)C3122.4Semi standard non polar33892256
4-Methoxy-3-geranylgeranyl-1,2-dihydroxybenzene,2TMS,isomer #1COC1=CC=C(O[Si](C)(C)C)C(O[Si](C)(C)C)=C1C/C=C(/C)CC/C=C(\C)CC/C=C(\C)CCC=C(C)C3113.6Semi standard non polar33892256
4-Methoxy-3-geranylgeranyl-1,2-dihydroxybenzene,1TBDMS,isomer #1COC1=CC=C(O)C(O[Si](C)(C)C(C)(C)C)=C1C/C=C(/C)CC/C=C(\C)CC/C=C(\C)CCC=C(C)C3336.5Semi standard non polar33892256
4-Methoxy-3-geranylgeranyl-1,2-dihydroxybenzene,1TBDMS,isomer #2COC1=CC=C(O[Si](C)(C)C(C)(C)C)C(O)=C1C/C=C(/C)CC/C=C(\C)CC/C=C(\C)CCC=C(C)C3346.7Semi standard non polar33892256
4-Methoxy-3-geranylgeranyl-1,2-dihydroxybenzene,2TBDMS,isomer #1COC1=CC=C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)=C1C/C=C(/C)CC/C=C(\C)CC/C=C(\C)CCC=C(C)C3534.2Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 4-Methoxy-3-geranylgeranyl-1,2-dihydroxybenzene GC-MS (Non-derivatized) - 70eV, Positivesplash10-0a6v-3698000000-c75cad0739576af2585b2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 4-Methoxy-3-geranylgeranyl-1,2-dihydroxybenzene GC-MS (2 TMS) - 70eV, Positivesplash10-0006-3213890000-8b33e9d81cdc13ea3abc2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 4-Methoxy-3-geranylgeranyl-1,2-dihydroxybenzene GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 4-Methoxy-3-geranylgeranyl-1,2-dihydroxybenzene GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4-Methoxy-3-geranylgeranyl-1,2-dihydroxybenzene 10V, Positive-QTOFsplash10-03di-0454900000-c088dc7c2961776d16be2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4-Methoxy-3-geranylgeranyl-1,2-dihydroxybenzene 20V, Positive-QTOFsplash10-0kfx-3983000000-4e785288555be125720c2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4-Methoxy-3-geranylgeranyl-1,2-dihydroxybenzene 40V, Positive-QTOFsplash10-0ldi-9284000000-ec48cb74a598cb6861042017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4-Methoxy-3-geranylgeranyl-1,2-dihydroxybenzene 10V, Negative-QTOFsplash10-03di-0000900000-f05842f9103ef0fd67612017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4-Methoxy-3-geranylgeranyl-1,2-dihydroxybenzene 20V, Negative-QTOFsplash10-03di-0109800000-bdf0d1a593455f1f637c2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4-Methoxy-3-geranylgeranyl-1,2-dihydroxybenzene 40V, Negative-QTOFsplash10-0a5a-6119000000-2ca488a88561c581e0a72017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4-Methoxy-3-geranylgeranyl-1,2-dihydroxybenzene 10V, Negative-QTOFsplash10-03di-0000900000-ed8c180c4767ab5012212021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4-Methoxy-3-geranylgeranyl-1,2-dihydroxybenzene 20V, Negative-QTOFsplash10-01w0-0912300000-5848689735df214c6ddb2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4-Methoxy-3-geranylgeranyl-1,2-dihydroxybenzene 40V, Negative-QTOFsplash10-00fu-1922000000-20d3af009ef48d3020982021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4-Methoxy-3-geranylgeranyl-1,2-dihydroxybenzene 10V, Positive-QTOFsplash10-03di-3295200000-16350ba57b4bd98d15942021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4-Methoxy-3-geranylgeranyl-1,2-dihydroxybenzene 20V, Positive-QTOFsplash10-0udi-6791000000-fc615358084e8721e63a2021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4-Methoxy-3-geranylgeranyl-1,2-dihydroxybenzene 40V, Positive-QTOFsplash10-0f7o-6900000000-49c684a8c36e3629c6612021-09-25Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB020559
KNApSAcK IDNot Available
Chemspider ID30777505
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound131752922
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.