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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-12 02:42:30 UTC
Update Date2022-03-07 02:56:52 UTC
HMDB IDHMDB0041063
Secondary Accession Numbers
  • HMDB41063
Metabolite Identification
Common Name1,2-Dimethoxy-13-methyl-[1,3]benzodioxolo[5,6-c]phenanthridine
Description1,2-Dimethoxy-13-methyl-[1,3]benzodioxolo[5,6-c]phenanthridine belongs to the class of organic compounds known as phenanthridines and derivatives. These are polycyclic compounds containing a phenanthridine moiety, which is a tricyclic system with two benzene rings joined by a pyridine forming a non-linear skeleton. Hydrogenated derivatives are also included. 1,2-Dimethoxy-13-methyl-[1,3]benzodioxolo[5,6-c]phenanthridine is a very strong basic compound (based on its pKa). Outside of the human body, 1,2-dimethoxy-13-methyl-[1,3]benzodioxolo[5,6-c]phenanthridine has been detected, but not quantified in, fruits and herbs and spices. This could make 1,2-dimethoxy-13-methyl-[1,3]benzodioxolo[5,6-c]phenanthridine a potential biomarker for the consumption of these foods.
Structure
Data?1563863619
Synonyms
ValueSource
1,2-Dimethoxy-13-methyl-[1,3]benzodioxolo[5,6-c]phenanthridine, 9ciHMDB
Chemical FormulaC21H17NO4
Average Molecular Weight347.364
Monoisotopic Molecular Weight347.115758037
IUPAC Name17,18-dimethoxy-20-methyl-5,7-dioxa-21-azapentacyclo[11.8.0.0²,¹⁰.0⁴,⁸.0¹⁴,¹⁹]henicosa-1(21),2,4(8),9,11,13,15,17,19-nonaene
Traditional Name17,18-dimethoxy-20-methyl-5,7-dioxa-21-azapentacyclo[11.8.0.0²,¹⁰.0⁴,⁸.0¹⁴,¹⁹]henicosa-1(21),2,4(8),9,11,13,15,17,19-nonaene
CAS Registry Number154490-59-2
SMILES
COC1=C(OC)C2=C(C)N=C3C4=CC5=C(OCO5)C=C4C=CC3=C2C=C1
InChI Identifier
InChI=1S/C21H17NO4/c1-11-19-13(6-7-16(23-2)21(19)24-3)14-5-4-12-8-17-18(26-10-25-17)9-15(12)20(14)22-11/h4-9H,10H2,1-3H3
InChI KeyFYDZPRHXTQYOIW-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as phenanthridines and derivatives. These are polycyclic compounds containing a phenanthridine moiety, which is a tricyclic system with two benzene rings joined by a pyridine forming a non-linear skeleton. Hydrogenated derivatives are also included.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassQuinolines and derivatives
Sub ClassBenzoquinolines
Direct ParentPhenanthridines and derivatives
Alternative Parents
Substituents
  • Phenanthridine
  • Isoquinoline
  • Naphthalene
  • Benzodioxole
  • Anisole
  • Alkyl aryl ether
  • Methylpyridine
  • Pyridine
  • Benzenoid
  • Heteroaromatic compound
  • Oxacycle
  • Acetal
  • Ether
  • Azacycle
  • Organooxygen compound
  • Organonitrogen compound
  • Hydrocarbon derivative
  • Organopnictogen compound
  • Organic oxygen compound
  • Organic nitrogen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
Role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point198 - 200 °CNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.0075 g/LALOGPS
logP4.45ALOGPS
logP3.55ChemAxon
logS-4.7ALOGPS
pKa (Strongest Basic)5.39ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area49.81 ŲChemAxon
Rotatable Bond Count2ChemAxon
Refractivity96.16 m³·mol⁻¹ChemAxon
Polarizability37.78 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+180.45931661259
DarkChem[M-H]-182.48131661259
DeepCCS[M+H]+193.730932474
DeepCCS[M-H]-191.34230932474
DeepCCS[M-2H]-225.42530932474
DeepCCS[M+Na]+200.65330932474
AllCCS[M+H]+182.832859911
AllCCS[M+H-H2O]+179.532859911
AllCCS[M+NH4]+185.832859911
AllCCS[M+Na]+186.632859911
AllCCS[M-H]-187.232859911
AllCCS[M+Na-2H]-186.232859911
AllCCS[M+HCOO]-185.232859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
1,2-Dimethoxy-13-methyl-[1,3]benzodioxolo[5,6-c]phenanthridineCOC1=C(OC)C2=C(C)N=C3C4=CC5=C(OCO5)C=C4C=CC3=C2C=C14334.0Standard polar33892256
1,2-Dimethoxy-13-methyl-[1,3]benzodioxolo[5,6-c]phenanthridineCOC1=C(OC)C2=C(C)N=C3C4=CC5=C(OCO5)C=C4C=CC3=C2C=C12936.2Standard non polar33892256
1,2-Dimethoxy-13-methyl-[1,3]benzodioxolo[5,6-c]phenanthridineCOC1=C(OC)C2=C(C)N=C3C4=CC5=C(OCO5)C=C4C=CC3=C2C=C13414.5Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 1,2-Dimethoxy-13-methyl-[1,3]benzodioxolo[5,6-c]phenanthridine GC-MS (Non-derivatized) - 70eV, Positivesplash10-0gb9-0029000000-abe6eb2419b70e30ccba2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 1,2-Dimethoxy-13-methyl-[1,3]benzodioxolo[5,6-c]phenanthridine GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1,2-Dimethoxy-13-methyl-[1,3]benzodioxolo[5,6-c]phenanthridine 10V, Positive-QTOFsplash10-0002-0009000000-82a3b57c63701da681372017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1,2-Dimethoxy-13-methyl-[1,3]benzodioxolo[5,6-c]phenanthridine 20V, Positive-QTOFsplash10-0002-0009000000-3989ca736a1ce10a3b022017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1,2-Dimethoxy-13-methyl-[1,3]benzodioxolo[5,6-c]phenanthridine 40V, Positive-QTOFsplash10-0udr-0096000000-aabef0c7ff20b52147c92017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1,2-Dimethoxy-13-methyl-[1,3]benzodioxolo[5,6-c]phenanthridine 10V, Negative-QTOFsplash10-0002-0009000000-ad7f5607c28a620c9bb32017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1,2-Dimethoxy-13-methyl-[1,3]benzodioxolo[5,6-c]phenanthridine 20V, Negative-QTOFsplash10-0002-0009000000-27451b00ec063015131d2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1,2-Dimethoxy-13-methyl-[1,3]benzodioxolo[5,6-c]phenanthridine 40V, Negative-QTOFsplash10-0w90-0096000000-11c198dbd3c41a96fbca2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1,2-Dimethoxy-13-methyl-[1,3]benzodioxolo[5,6-c]phenanthridine 10V, Positive-QTOFsplash10-0002-0009000000-285d9e72a283daa290ab2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1,2-Dimethoxy-13-methyl-[1,3]benzodioxolo[5,6-c]phenanthridine 20V, Positive-QTOFsplash10-0002-0009000000-87ce46586e97dc38bddf2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1,2-Dimethoxy-13-methyl-[1,3]benzodioxolo[5,6-c]phenanthridine 40V, Positive-QTOFsplash10-0udr-0049000000-2de0deac8d80b256132e2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1,2-Dimethoxy-13-methyl-[1,3]benzodioxolo[5,6-c]phenanthridine 10V, Negative-QTOFsplash10-0002-0009000000-2282db83d9508a2924b02021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1,2-Dimethoxy-13-methyl-[1,3]benzodioxolo[5,6-c]phenanthridine 20V, Negative-QTOFsplash10-0002-0009000000-12261fd8f8ea293d1b5a2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1,2-Dimethoxy-13-methyl-[1,3]benzodioxolo[5,6-c]phenanthridine 40V, Negative-QTOFsplash10-0udr-0049000000-b11e461655ba7cf4106b2021-09-24Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB020938
KNApSAcK IDNot Available
Chemspider ID30777530
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound101673185
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .