Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-12 03:07:35 UTC
Update Date2022-03-07 02:57:01 UTC
HMDB IDHMDB0041438
Secondary Accession Numbers
  • HMDB41438
Metabolite Identification
Common NamePseudomonine
DescriptionPseudomonine belongs to the class of organic compounds known as n-acyl-alpha amino acids and derivatives. N-acyl-alpha amino acids and derivatives are compounds containing an alpha amino acid (or a derivative thereof) which bears an acyl group at its terminal nitrogen atom. Pseudomonine has been detected, but not quantified in, fishes. This could make pseudomonine a potential biomarker for the consumption of these foods. Based on a literature review very few articles have been published on Pseudomonine.
Structure
Data?1563863663
Synonyms
ValueSource
2-Hydroxy-N-{2-[2-(1H-imidazol-5-yl)ethyl]-5-methyl-3-oxo-1,2-oxazolidin-4-yl}benzene-1-carboximidateHMDB
PseudomonineMeSH
Chemical FormulaC16H18N4O4
Average Molecular Weight330.3385
Monoisotopic Molecular Weight330.132805084
IUPAC Name2-hydroxy-N-{2-[2-(1H-imidazol-4-yl)ethyl]-5-methyl-3-oxo-1,2-oxazolidin-4-yl}benzamide
Traditional Name2-hydroxy-N-{2-[2-(1H-imidazol-4-yl)ethyl]-5-methyl-3-oxo-1,2-oxazolidin-4-yl}benzamide
CAS Registry Number172923-94-3
SMILES
CC1ON(CCC2=CNC=N2)C(=O)C1NC(=O)C1=C(O)C=CC=C1
InChI Identifier
InChI=1S/C16H18N4O4/c1-10-14(19-15(22)12-4-2-3-5-13(12)21)16(23)20(24-10)7-6-11-8-17-9-18-11/h2-5,8-10,14,21H,6-7H2,1H3,(H,17,18)(H,19,22)
InChI KeyXYEWTJQWOJBDBL-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as n-acyl-alpha amino acids and derivatives. N-acyl-alpha amino acids and derivatives are compounds containing an alpha amino acid (or a derivative thereof) which bears an acyl group at its terminal nitrogen atom.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentN-acyl-alpha amino acids and derivatives
Alternative Parents
Substituents
  • N-acyl-alpha amino acid or derivatives
  • Salicylamide
  • Salicylic acid or derivatives
  • Benzamide
  • Benzoic acid or derivatives
  • Benzoyl
  • Phenol
  • 1-hydroxy-4-unsubstituted benzenoid
  • 1-hydroxy-2-unsubstituted benzenoid
  • Monocyclic benzene moiety
  • Oxazolidinone
  • Benzenoid
  • Heteroaromatic compound
  • Azole
  • Vinylogous acid
  • Imidazole
  • Isoxazolidine
  • Carboxamide group
  • Secondary carboxylic acid amide
  • Organoheterocyclic compound
  • Azacycle
  • Oxacycle
  • Organonitrogen compound
  • Carbonyl group
  • Hydrocarbon derivative
  • Organic oxide
  • Organopnictogen compound
  • Organic oxygen compound
  • Organooxygen compound
  • Organic nitrogen compound
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
Role
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility1.64 g/LALOGPS
logP1.08ALOGPS
logP0.9ChemAxon
logS-2.3ALOGPS
pKa (Strongest Acidic)8.19ChemAxon
pKa (Strongest Basic)6.54ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area107.55 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity85 m³·mol⁻¹ChemAxon
Polarizability33.06 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+174.88431661259
DarkChem[M-H]-174.19431661259
DeepCCS[M+H]+174.2730932474
DeepCCS[M-H]-171.91230932474
DeepCCS[M-2H]-205.79730932474
DeepCCS[M+Na]+181.12130932474
AllCCS[M+H]+179.132859911
AllCCS[M+H-H2O]+176.032859911
AllCCS[M+NH4]+182.032859911
AllCCS[M+Na]+182.832859911
AllCCS[M-H]-177.032859911
AllCCS[M+Na-2H]-176.832859911
AllCCS[M+HCOO]-176.732859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
PseudomonineCC1ON(CCC2=CNC=N2)C(=O)C1NC(=O)C1=C(O)C=CC=C13791.0Standard polar33892256
PseudomonineCC1ON(CCC2=CNC=N2)C(=O)C1NC(=O)C1=C(O)C=CC=C12913.9Standard non polar33892256
PseudomonineCC1ON(CCC2=CNC=N2)C(=O)C1NC(=O)C1=C(O)C=CC=C13278.0Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Pseudomonine,1TMS,isomer #1CC1ON(CCC2=C[NH]C=N2)C(=O)C1NC(=O)C1=CC=CC=C1O[Si](C)(C)C3131.9Semi standard non polar33892256
Pseudomonine,1TMS,isomer #2CC1ON(CCC2=CN([Si](C)(C)C)C=N2)C(=O)C1NC(=O)C1=CC=CC=C1O3205.7Semi standard non polar33892256
Pseudomonine,1TMS,isomer #3CC1ON(CCC2=C[NH]C=N2)C(=O)C1N(C(=O)C1=CC=CC=C1O)[Si](C)(C)C2998.8Semi standard non polar33892256
Pseudomonine,2TMS,isomer #1CC1ON(CCC2=CN([Si](C)(C)C)C=N2)C(=O)C1NC(=O)C1=CC=CC=C1O[Si](C)(C)C3229.2Semi standard non polar33892256
Pseudomonine,2TMS,isomer #1CC1ON(CCC2=CN([Si](C)(C)C)C=N2)C(=O)C1NC(=O)C1=CC=CC=C1O[Si](C)(C)C3002.0Standard non polar33892256
Pseudomonine,2TMS,isomer #2CC1ON(CCC2=C[NH]C=N2)C(=O)C1N(C(=O)C1=CC=CC=C1O[Si](C)(C)C)[Si](C)(C)C3029.9Semi standard non polar33892256
Pseudomonine,2TMS,isomer #2CC1ON(CCC2=C[NH]C=N2)C(=O)C1N(C(=O)C1=CC=CC=C1O[Si](C)(C)C)[Si](C)(C)C2964.8Standard non polar33892256
Pseudomonine,2TMS,isomer #3CC1ON(CCC2=CN([Si](C)(C)C)C=N2)C(=O)C1N(C(=O)C1=CC=CC=C1O)[Si](C)(C)C3065.7Semi standard non polar33892256
Pseudomonine,2TMS,isomer #3CC1ON(CCC2=CN([Si](C)(C)C)C=N2)C(=O)C1N(C(=O)C1=CC=CC=C1O)[Si](C)(C)C2993.4Standard non polar33892256
Pseudomonine,3TMS,isomer #1CC1ON(CCC2=CN([Si](C)(C)C)C=N2)C(=O)C1N(C(=O)C1=CC=CC=C1O[Si](C)(C)C)[Si](C)(C)C3109.8Semi standard non polar33892256
Pseudomonine,3TMS,isomer #1CC1ON(CCC2=CN([Si](C)(C)C)C=N2)C(=O)C1N(C(=O)C1=CC=CC=C1O[Si](C)(C)C)[Si](C)(C)C2960.1Standard non polar33892256
Pseudomonine,1TBDMS,isomer #1CC1ON(CCC2=C[NH]C=N2)C(=O)C1NC(=O)C1=CC=CC=C1O[Si](C)(C)C(C)(C)C3353.6Semi standard non polar33892256
Pseudomonine,1TBDMS,isomer #2CC1ON(CCC2=CN([Si](C)(C)C(C)(C)C)C=N2)C(=O)C1NC(=O)C1=CC=CC=C1O3439.8Semi standard non polar33892256
Pseudomonine,1TBDMS,isomer #3CC1ON(CCC2=C[NH]C=N2)C(=O)C1N(C(=O)C1=CC=CC=C1O)[Si](C)(C)C(C)(C)C3225.4Semi standard non polar33892256
Pseudomonine,2TBDMS,isomer #1CC1ON(CCC2=CN([Si](C)(C)C(C)(C)C)C=N2)C(=O)C1NC(=O)C1=CC=CC=C1O[Si](C)(C)C(C)(C)C3650.1Semi standard non polar33892256
Pseudomonine,2TBDMS,isomer #1CC1ON(CCC2=CN([Si](C)(C)C(C)(C)C)C=N2)C(=O)C1NC(=O)C1=CC=CC=C1O[Si](C)(C)C(C)(C)C3394.4Standard non polar33892256
Pseudomonine,2TBDMS,isomer #2CC1ON(CCC2=C[NH]C=N2)C(=O)C1N(C(=O)C1=CC=CC=C1O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3441.2Semi standard non polar33892256
Pseudomonine,2TBDMS,isomer #2CC1ON(CCC2=C[NH]C=N2)C(=O)C1N(C(=O)C1=CC=CC=C1O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3372.4Standard non polar33892256
Pseudomonine,2TBDMS,isomer #3CC1ON(CCC2=CN([Si](C)(C)C(C)(C)C)C=N2)C(=O)C1N(C(=O)C1=CC=CC=C1O)[Si](C)(C)C(C)(C)C3491.9Semi standard non polar33892256
Pseudomonine,2TBDMS,isomer #3CC1ON(CCC2=CN([Si](C)(C)C(C)(C)C)C=N2)C(=O)C1N(C(=O)C1=CC=CC=C1O)[Si](C)(C)C(C)(C)C3362.5Standard non polar33892256
Pseudomonine,3TBDMS,isomer #1CC1ON(CCC2=CN([Si](C)(C)C(C)(C)C)C=N2)C(=O)C1N(C(=O)C1=CC=CC=C1O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3702.8Semi standard non polar33892256
Pseudomonine,3TBDMS,isomer #1CC1ON(CCC2=CN([Si](C)(C)C(C)(C)C)C=N2)C(=O)C1N(C(=O)C1=CC=CC=C1O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3519.4Standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Pseudomonine GC-MS (Non-derivatized) - 70eV, Positivesplash10-00di-9810000000-2afaeb864dbbccf9a2952017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Pseudomonine GC-MS (1 TMS) - 70eV, Positivesplash10-0006-9723000000-95363b07884822775aaf2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Pseudomonine GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Pseudomonine GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pseudomonine 10V, Positive-QTOFsplash10-000t-9307000000-825490c91b72af8ddc632017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pseudomonine 20V, Positive-QTOFsplash10-00di-2911000000-5df1831cc351f2211f472017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pseudomonine 40V, Positive-QTOFsplash10-0f6t-9100000000-4fb6765e98ec90a6ffe72017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pseudomonine 10V, Negative-QTOFsplash10-004i-0924000000-0231dc834b47ca7d6e102017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pseudomonine 20V, Negative-QTOFsplash10-0006-6912000000-15892bf148d7bdc375502017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pseudomonine 40V, Negative-QTOFsplash10-0006-9500000000-e62a606994d2c0a9e58f2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pseudomonine 10V, Positive-QTOFsplash10-001i-1409000000-44f247efb610e8327bd02021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pseudomonine 20V, Positive-QTOFsplash10-006x-9712000000-9696246936a2310842222021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pseudomonine 40V, Positive-QTOFsplash10-0002-9200000000-edc685c91d5e6271196f2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pseudomonine 10V, Negative-QTOFsplash10-004i-1619000000-fd28f0dab7a46b30955d2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pseudomonine 20V, Negative-QTOFsplash10-00ko-6962000000-51fc425c3ff1b2c1f4622021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pseudomonine 40V, Negative-QTOFsplash10-0006-9210000000-2c5734b2390ae018c58e2021-09-24Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB021389
KNApSAcK IDC00057144
Chemspider ID154353
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound177258
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .