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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-12 03:12:34 UTC
Update Date2022-03-07 02:57:03 UTC
HMDB IDHMDB0041521
Secondary Accession Numbers
  • HMDB41521
Metabolite Identification
Common Name3-Isomangostin
Description3-Isomangostin, also known as mangostanol, belongs to the class of organic compounds known as 8-prenylated xanthones. These are organic compounds containing a C5-isoprenoid group linked to a xanthone moiety at the 8-position. Xanthone is a tricyclic compound made up of two benzene rings linearly fused to each other through a pyran ring that carries a ketone group. 3-Isomangostin has been detected, but not quantified in, fruits and purple mangosteens (Garcinia mangostana). This could make 3-isomangostin a potential biomarker for the consumption of these foods. Based on a literature review a significant number of articles have been published on 3-Isomangostin.
Structure
Data?1563863672
Synonyms
ValueSource
MangostanolHMDB
3-IsomangostinMeSH
Chemical FormulaC24H26O6
Average Molecular Weight410.4596
Monoisotopic Molecular Weight410.172938564
IUPAC Name5,9-dihydroxy-8-methoxy-2,2-dimethyl-7-(3-methylbut-2-en-1-yl)-2,3,4,6-tetrahydro-1,11-dioxatetracen-6-one
Traditional Name3-isomangostin
CAS Registry Number19275-46-8
SMILES
COC1=C(O)C=C2OC3=C(C(O)=C4CCC(C)(C)OC4=C3)C(=O)C2=C1CC=C(C)C
InChI Identifier
InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(10-15(25)23(14)28-5)29-18-11-16-13(8-9-24(3,4)30-16)21(26)20(18)22(19)27/h6,10-11,25-26H,7-9H2,1-5H3
InChI KeyKJCDBAVVDILRMP-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as 8-prenylated xanthones. These are organic compounds containing a C5-isoprenoid group linked to a xanthone moiety at the 8-position. Xanthone is a tricyclic compound made up of two benzene rings linearly fused to each other through a pyran ring that carries a ketone group.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassBenzopyrans
Sub Class1-benzopyrans
Direct Parent8-prenylated xanthones
Alternative Parents
Substituents
  • 8-prenylated xanthone
  • Pyranoxanthone
  • Pyranochromene
  • 2,2-dimethyl-1-benzopyran
  • Chromone
  • Anisole
  • 1-hydroxy-4-unsubstituted benzenoid
  • 1-hydroxy-2-unsubstituted benzenoid
  • Alkyl aryl ether
  • Pyranone
  • Pyran
  • Benzenoid
  • Heteroaromatic compound
  • Vinylogous acid
  • Ether
  • Oxacycle
  • Organic oxygen compound
  • Organooxygen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
Role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point155 - 160 °CNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.0066 g/LALOGPS
logP4.58ALOGPS
logP5.6ChemAxon
logS-4.8ALOGPS
pKa (Strongest Acidic)7.83ChemAxon
pKa (Strongest Basic)-4.2ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area85.22 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity114.91 m³·mol⁻¹ChemAxon
Polarizability45.13 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+195.98531661259
DarkChem[M-H]-196.19831661259
DeepCCS[M+H]+206.53630932474
DeepCCS[M-H]-204.17830932474
DeepCCS[M-2H]-237.36530932474
DeepCCS[M+Na]+212.62930932474
AllCCS[M+H]+199.932859911
AllCCS[M+H-H2O]+197.332859911
AllCCS[M+NH4]+202.432859911
AllCCS[M+Na]+203.132859911
AllCCS[M-H]-201.632859911
AllCCS[M+Na-2H]-201.532859911
AllCCS[M+HCOO]-201.632859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
3-IsomangostinCOC1=C(O)C=C2OC3=C(C(O)=C4CCC(C)(C)OC4=C3)C(=O)C2=C1CC=C(C)C4754.6Standard polar33892256
3-IsomangostinCOC1=C(O)C=C2OC3=C(C(O)=C4CCC(C)(C)OC4=C3)C(=O)C2=C1CC=C(C)C3526.5Standard non polar33892256
3-IsomangostinCOC1=C(O)C=C2OC3=C(C(O)=C4CCC(C)(C)OC4=C3)C(=O)C2=C1CC=C(C)C3626.2Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
3-Isomangostin,1TMS,isomer #1COC1=C(O[Si](C)(C)C)C=C2OC3=CC4=C(CCC(C)(C)O4)C(O)=C3C(=O)C2=C1CC=C(C)C3345.5Semi standard non polar33892256
3-Isomangostin,1TMS,isomer #2COC1=C(O)C=C2OC3=CC4=C(CCC(C)(C)O4)C(O[Si](C)(C)C)=C3C(=O)C2=C1CC=C(C)C3357.2Semi standard non polar33892256
3-Isomangostin,2TMS,isomer #1COC1=C(O[Si](C)(C)C)C=C2OC3=CC4=C(CCC(C)(C)O4)C(O[Si](C)(C)C)=C3C(=O)C2=C1CC=C(C)C3294.3Semi standard non polar33892256
3-Isomangostin,1TBDMS,isomer #1COC1=C(O[Si](C)(C)C(C)(C)C)C=C2OC3=CC4=C(CCC(C)(C)O4)C(O)=C3C(=O)C2=C1CC=C(C)C3559.9Semi standard non polar33892256
3-Isomangostin,1TBDMS,isomer #2COC1=C(O)C=C2OC3=CC4=C(CCC(C)(C)O4)C(O[Si](C)(C)C(C)(C)C)=C3C(=O)C2=C1CC=C(C)C3559.7Semi standard non polar33892256
3-Isomangostin,2TBDMS,isomer #1COC1=C(O[Si](C)(C)C(C)(C)C)C=C2OC3=CC4=C(CCC(C)(C)O4)C(O[Si](C)(C)C(C)(C)C)=C3C(=O)C2=C1CC=C(C)C3692.5Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 3-Isomangostin GC-MS (Non-derivatized) - 70eV, Positivesplash10-0005-1049000000-b47fbcb9f150cac5de2c2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-Isomangostin GC-MS (2 TMS) - 70eV, Positivesplash10-000f-2040390000-4fc9730624933073cad32017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-Isomangostin GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3-Isomangostin GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Isomangostin 10V, Positive-QTOFsplash10-03di-1009700000-0343c486b49322e085e12015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Isomangostin 20V, Positive-QTOFsplash10-0a4i-1009000000-9a0e9fe8fc5502db16672015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Isomangostin 40V, Positive-QTOFsplash10-014r-5029000000-2c070242750816f9a2c02015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Isomangostin 10V, Negative-QTOFsplash10-0a4i-0001900000-c3d03e42abbf9c75299c2015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Isomangostin 20V, Negative-QTOFsplash10-0pb9-0009500000-c8cd0036a31ef03d25252015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Isomangostin 40V, Negative-QTOFsplash10-0ac0-0259000000-1fd0518eeee27f0c37c12015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Isomangostin 10V, Positive-QTOFsplash10-0bt9-0009700000-e7fcfcda8f235bd37b822021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Isomangostin 20V, Positive-QTOFsplash10-0bt9-0009400000-115a654584f442722f732021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Isomangostin 40V, Positive-QTOFsplash10-0f79-1049100000-d0c23ae091f4a71a69832021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Isomangostin 10V, Negative-QTOFsplash10-0a4i-0000900000-d2c445cbedf3cebfa6b32021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Isomangostin 20V, Negative-QTOFsplash10-0a4i-0008900000-b14fe132598321e56cbe2021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-Isomangostin 40V, Negative-QTOFsplash10-014u-0049000000-e0950096724bb6edd7ca2021-09-25Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB021497
KNApSAcK IDC00034764
Chemspider ID13077523
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound13873655
PDB IDMKU
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .