Hmdb loader

Showing metabocard for Palmityl-CoA (HMDB0001338)

Jump To Section:
IdentificationTaxonomyOntologyPhysical propertiesSpectraBiological propertiesConcentrationsLinksReferencesenzymes (149)transporters (1) Show 150 proteinsXML
enzymes (149)transporters (1) Show 150 proteins
Show more...Show more...Show more...Show more...Show more...
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2005-11-16 15:48:42 UTC
Update Date2022-03-07 02:49:09 UTC
HMDB IDHMDB0001338
Secondary Accession Numbers
  • HMDB0059623
  • HMDB01338
  • HMDB59623
Metabolite Identification
Common NamePalmityl-CoA
Descriptionhexadecanoyl-CoA belongs to the class of organic compounds known as hexoses. These are monosaccharides in which the sugar unit is a is a six-carbon containing moeity. Thus, hexadecanoyl-CoA is considered to be a fatty ester lipid molecule. hexadecanoyl-CoA is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral. Outside of the human body, hexadecanoyl-CoA has been detected, but not quantified in, several different foods, such as hedge mustards, swedes, nances, pak choy, and sacred lotus. This could make hexadecanoyl-CoA a potential biomarker for the consumption of these foods.
Structure
Thumb
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0001338 (Palmityl-CoA)

  Mrv1652309042000392D          

 65 67  0  0  1  0            999 V2000
   15.7709  -19.0510    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   15.1035  -18.5660    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.5158  -19.8356    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   14.4359  -19.0510    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   14.6909  -19.8356    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   16.0008  -20.5031    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.0249  -23.0920    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.7677  -23.5046    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3104  -23.5046    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.5959  -23.0920    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8815  -23.5046    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.3388  -21.8546    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5959  -22.2670    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3388  -21.0295    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.9099  -21.0295    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.6243  -20.6170    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0532  -19.7919    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9263  -18.6650    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3388  -19.3794    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7514  -18.6650    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6243  -19.7919    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.9098  -19.3794    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.7677  -19.3794    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.4178  -19.3794    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.0678  -19.3794    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.5928  -18.5543    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.5928  -20.2044    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.2428  -18.5543    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.2428  -20.2044    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.5928  -19.3794    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   12.2428  -19.3794    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   13.6512  -18.7961    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.2059  -20.5031    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.3809  -21.3282    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.0309  -21.3282    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.2059  -21.3282    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   14.2059  -22.1532    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.5554  -18.7961    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   17.1687  -19.3481    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.8910  -18.0424    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.8831  -18.9356    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.1687  -20.1731    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   17.7116  -18.1286    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   18.5976  -19.3480    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.8831  -20.5856    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.5976  -20.1730    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   19.3120  -18.9355    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   10.4823  -23.0920    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
   11.9113  -23.0920    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.6258  -23.5046    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.3403  -23.0920    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.0547  -23.5046    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.7692  -23.0920    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.4837  -23.5046    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.1981  -23.0920    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.9126  -23.5046    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.6271  -23.0920    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1969  -23.5046    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1969  -24.3296    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   19.0561  -23.0921    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.3417  -23.5046    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.4848  -23.0921    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.7705  -23.5046    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.1992  -23.5046    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.9135  -23.0921    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1 38  1  1  0  0  0
  2  1  1  0  0  0  0
  3  1  1  0  0  0  0
  4  2  1  0  0  0  0
  5  3  1  0  0  0  0
  3  6  1  6  0  0  0
  4 32  1  1  0  0  0
  5  4  1  0  0  0  0
  5 33  1  6  0  0  0
  9  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8 48  1  0  0  0  0
 10  9  1  0  0  0  0
 13 10  1  0  0  0  0
 10 11  2  0  0  0  0
 12 14  1  0  0  0  0
 13 12  1  0  0  0  0
 16 14  1  0  0  0  0
 16 15  2  0  0  0  0
 16 21  1  0  0  0  0
 19 17  1  0  0  0  0
 17 23  1  0  0  0  0
 19 18  1  0  0  0  0
 21 19  1  0  0  0  0
 19 20  1  0  0  0  0
 21 22  1  6  0  0  0
 23 30  1  0  0  0  0
 30 24  1  0  0  0  0
 24 31  1  0  0  0  0
 31 25  1  0  0  0  0
 32 25  1  0  0  0  0
 30 26  2  0  0  0  0
 30 27  1  0  0  0  0
 31 28  2  0  0  0  0
 31 29  1  0  0  0  0
 33 36  1  0  0  0  0
 36 34  1  0  0  0  0
 36 35  1  0  0  0  0
 36 37  2  0  0  0  0
 39 38  1  0  0  0  0
 40 38  1  0  0  0  0
 41 39  2  0  0  0  0
 42 39  1  0  0  0  0
 43 40  2  0  0  0  0
 44 41  1  0  0  0  0
 43 41  1  0  0  0  0
 45 42  2  0  0  0  0
 46 44  2  0  0  0  0
 47 44  1  0  0  0  0
 46 45  1  0  0  0  0
 48 58  1  0  0  0  0
 58 49  1  0  0  0  0
 49 50  1  0  0  0  0
 50 51  1  0  0  0  0
 51 52  1  0  0  0  0
 52 53  1  0  0  0  0
 53 54  1  0  0  0  0
 54 55  1  0  0  0  0
 55 56  1  0  0  0  0
 56 57  1  0  0  0  0
 58 59  2  0  0  0  0
 61 60  1  0  0  0  0
 57 61  1  0  0  0  0
 63 62  1  0  0  0  0
 62 64  1  0  0  0  0
 64 65  1  0  0  0  0
 60 63  1  0  0  0  0
M  END
Download

3D MOL for HMDB0001338 (Palmityl-CoA)

HMDB0001338
     RDKit          3D
Palmityl-CoA
131133  0  0  0  0  0  0  0  0999 V2000
   -1.9096   -5.2375    1.6375 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8163   -5.3485    2.6730 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9918   -4.3761    3.8028 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9939   -2.9341    3.3181 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1684   -2.0183    4.4826 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4254   -2.2118    5.2602 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6156   -1.9553    4.3024 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8972   -2.1260    5.0586 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1251   -1.9287    4.2737 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4196   -0.6095    3.7039 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5181    0.0036    2.7145 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3081   -0.8139    1.4552 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3331   -0.0723    0.5710 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1068   -0.7884   -0.7558 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0868    0.0163   -1.5064 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8161   -0.5191   -2.8603 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5269   -1.4113   -3.2807 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4580    0.1876   -3.7690 S   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4423   -0.2129   -5.5053 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5007    0.4667   -6.3385 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4124    1.9010   -6.3437 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6063    2.7868   -5.2777 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9420    2.3726   -4.1339 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4144    4.2636   -5.4437 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8065    4.9253   -4.1236 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0850    4.3562   -3.0281 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6876    4.3875   -2.9352 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0095    4.9510   -3.8242 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0116    3.7356   -1.7649 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.0181    3.1351   -0.9642 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8157    4.6754   -0.9408 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0543    5.7621   -0.3969 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9198    5.2619   -1.7557 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3874    3.7877    0.2046 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1023    4.3008    1.0344 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0039    4.9148    2.0930 P   0  0  0  0  0  5  0  0  0  0  0  0
    3.8283    6.1394    1.6103 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1169    5.4650    3.4732 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1725    3.8460    2.8077 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7934    2.2408    2.4890 P   0  0  0  0  0  5  0  0  0  0  0  0
    2.3481    2.0670    2.1205 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0423    1.3870    3.9526 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8161    1.5803    1.2891 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0592    0.2379    1.5593 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9680   -0.3402    0.5007 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.2299   -1.6832    0.7449 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.2585   -2.3101   -0.4883 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.2376   -3.7260   -0.4348 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.3477   -4.4927   -0.6017 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0301   -5.7768   -0.4976 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.7227   -5.8678   -0.2647 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8851   -6.9602   -0.0753 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4449   -8.2542   -0.1269 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.5829   -6.7040    0.1451 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.1129   -5.4245    0.1795 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9222   -4.3619   -0.0036 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.2304   -4.5810   -0.2259 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0609   -1.6965   -1.1635 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.0720   -1.9034   -2.5408 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3311   -0.2139   -0.8349 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.1823    0.2085   -1.8398 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5068    1.3829   -2.8335 P   0  0  0  0  0  5  0  0  0  0  0  0
    6.4780    1.7940   -3.9333 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9269    2.6963   -1.9833 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1983    0.6534   -3.6295 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7689   -4.3105    1.0570 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9080   -5.1600    2.1318 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8312   -6.1610    1.0072 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1522   -5.2082    2.1757 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8953   -6.3742    3.1219 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8972   -4.5514    4.3922 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1293   -4.4603    4.4921 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0047   -2.6831    2.8582 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7355   -2.8101    2.5308 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2682   -2.1249    5.1483 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1839   -0.9608    4.1042 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4770   -1.3759    6.0072 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5300   -3.1823    5.7500 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5387   -2.6559    3.4412 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4217   -0.9560    3.9207 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9076   -3.1357    5.5831 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8934   -1.3709    5.9036 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2597   -2.7633    3.5099 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9912   -2.1529    4.9989 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4722    0.1161    4.5778 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4888   -0.5818    3.3252 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6720    0.5453    3.0932 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1718    0.8932    2.2813 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2847   -0.8991    0.9183 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8872   -1.8052    1.6440 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3625   -0.0347    1.0879 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7130    0.9364    0.2951 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7074   -1.8027   -0.5805 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0129   -0.8450   -1.3735 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1335   -0.0192   -0.9152 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4662    1.0735   -1.5628 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4259    0.0025   -5.9517 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5415   -1.3297   -5.5959 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5241    0.1893   -5.9445 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4347    0.0664   -7.3829 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1675    2.3450   -7.2975 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0562    4.5834   -6.2819 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3719    4.5384   -5.6480 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8848    4.7879   -3.9949 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6366    6.0288   -4.1996 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6310    3.8932   -2.2583 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5852    2.9146   -2.1941 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8032    2.1947   -0.8485 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9761    5.3756    0.0679 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3640    6.3958   -1.2413 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4992    6.4350    0.3105 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7296    5.6978   -1.1209 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4984    6.0581   -2.3906 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3769    4.5176   -2.4701 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8542    2.9256   -0.4332 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4082    3.2537    0.5528 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3990    4.7925    3.5788 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8416    0.4231    3.8161 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1034   -0.3245    1.5427 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5388    0.1772    2.5805 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9333    0.1950    0.5982 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1544   -1.9195   -1.0367 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.3627   -4.1156   -0.7970 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7419   -8.7265    0.7454 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5663   -8.7379   -1.0305 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0533   -5.3175    0.3630 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1050   -1.9563   -0.7054 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6789   -2.8238   -2.6639 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3537    0.3387   -0.8368 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3311    2.7705   -1.1088 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5489    1.3597   -3.8296 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  2  0
 16 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  2  0
 22 24  1  0
 24 25  1  0
 25 26  1  0
 26 27  1  0
 27 28  2  0
 27 29  1  0
 29 30  1  0
 29 31  1  0
 31 32  1  0
 31 33  1  0
 31 34  1  0
 34 35  1  0
 35 36  1  0
 36 37  2  0
 36 38  1  0
 36 39  1  0
 39 40  1  0
 40 41  2  0
 40 42  1  0
 40 43  1  0
 43 44  1  0
 44 45  1  0
 45 46  1  0
 46 47  1  0
 47 48  1  0
 48 49  1  0
 49 50  2  0
 50 51  1  0
 51 52  2  0
 52 53  1  0
 52 54  1  0
 54 55  2  0
 55 56  1  0
 56 57  2  0
 47 58  1  0
 58 59  1  0
 58 60  1  0
 60 61  1  0
 61 62  1  0
 62 63  2  0
 62 64  1  0
 62 65  1  0
 60 45  1  0
 57 48  1  0
 57 51  1  0
  1 66  1  0
  1 67  1  0
  1 68  1  0
  2 69  1  0
  2 70  1  0
  3 71  1  0
  3 72  1  0
  4 73  1  0
  4 74  1  0
  5 75  1  0
  5 76  1  0
  6 77  1  0
  6 78  1  0
  7 79  1  0
  7 80  1  0
  8 81  1  0
  8 82  1  0
  9 83  1  0
  9 84  1  0
 10 85  1  0
 10 86  1  0
 11 87  1  0
 11 88  1  0
 12 89  1  0
 12 90  1  0
 13 91  1  0
 13 92  1  0
 14 93  1  0
 14 94  1  0
 15 95  1  0
 15 96  1  0
 19 97  1  0
 19 98  1  0
 20 99  1  0
 20100  1  0
 21101  1  0
 24102  1  0
 24103  1  0
 25104  1  0
 25105  1  0
 26106  1  0
 29107  1  6
 30108  1  0
 32109  1  0
 32110  1  0
 32111  1  0
 33112  1  0
 33113  1  0
 33114  1  0
 34115  1  0
 34116  1  0
 38117  1  0
 42118  1  0
 44119  1  0
 44120  1  0
 45121  1  6
 47122  1  6
 49123  1  0
 53124  1  0
 53125  1  0
 55126  1  0
 58127  1  1
 59128  1  0
 60129  1  1
 64130  1  0
 65131  1  0
M  END
Download

3D SDF for HMDB0001338 (Palmityl-CoA)

  Mrv1652309042000392D          

 65 67  0  0  1  0            999 V2000
   15.7709  -19.0510    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   15.1035  -18.5660    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.5158  -19.8356    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   14.4359  -19.0510    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   14.6909  -19.8356    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   16.0008  -20.5031    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.0249  -23.0920    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.7677  -23.5046    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3104  -23.5046    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.5959  -23.0920    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8815  -23.5046    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.3388  -21.8546    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5959  -22.2670    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3388  -21.0295    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.9099  -21.0295    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.6243  -20.6170    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0532  -19.7919    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9263  -18.6650    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3388  -19.3794    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7514  -18.6650    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6243  -19.7919    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.9098  -19.3794    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.7677  -19.3794    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.4178  -19.3794    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.0678  -19.3794    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.5928  -18.5543    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.5928  -20.2044    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.2428  -18.5543    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.2428  -20.2044    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.5928  -19.3794    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   12.2428  -19.3794    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   13.6512  -18.7961    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.2059  -20.5031    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.3809  -21.3282    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.0309  -21.3282    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.2059  -21.3282    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   14.2059  -22.1532    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.5554  -18.7961    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   17.1687  -19.3481    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.8910  -18.0424    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.8831  -18.9356    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.1687  -20.1731    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   17.7116  -18.1286    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   18.5976  -19.3480    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.8831  -20.5856    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.5976  -20.1730    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   19.3120  -18.9355    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   10.4823  -23.0920    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
   11.9113  -23.0920    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.6258  -23.5046    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.3403  -23.0920    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.0547  -23.5046    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.7692  -23.0920    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.4837  -23.5046    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.1981  -23.0920    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.9126  -23.5046    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.6271  -23.0920    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1969  -23.5046    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1969  -24.3296    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   19.0561  -23.0921    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.3417  -23.5046    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.4848  -23.0921    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.7705  -23.5046    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.1992  -23.5046    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.9135  -23.0921    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1 38  1  1  0  0  0
  2  1  1  0  0  0  0
  3  1  1  0  0  0  0
  4  2  1  0  0  0  0
  5  3  1  0  0  0  0
  3  6  1  6  0  0  0
  4 32  1  1  0  0  0
  5  4  1  0  0  0  0
  5 33  1  6  0  0  0
  9  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8 48  1  0  0  0  0
 10  9  1  0  0  0  0
 13 10  1  0  0  0  0
 10 11  2  0  0  0  0
 12 14  1  0  0  0  0
 13 12  1  0  0  0  0
 16 14  1  0  0  0  0
 16 15  2  0  0  0  0
 16 21  1  0  0  0  0
 19 17  1  0  0  0  0
 17 23  1  0  0  0  0
 19 18  1  0  0  0  0
 21 19  1  0  0  0  0
 19 20  1  0  0  0  0
 21 22  1  6  0  0  0
 23 30  1  0  0  0  0
 30 24  1  0  0  0  0
 24 31  1  0  0  0  0
 31 25  1  0  0  0  0
 32 25  1  0  0  0  0
 30 26  2  0  0  0  0
 30 27  1  0  0  0  0
 31 28  2  0  0  0  0
 31 29  1  0  0  0  0
 33 36  1  0  0  0  0
 36 34  1  0  0  0  0
 36 35  1  0  0  0  0
 36 37  2  0  0  0  0
 39 38  1  0  0  0  0
 40 38  1  0  0  0  0
 41 39  2  0  0  0  0
 42 39  1  0  0  0  0
 43 40  2  0  0  0  0
 44 41  1  0  0  0  0
 43 41  1  0  0  0  0
 45 42  2  0  0  0  0
 46 44  2  0  0  0  0
 47 44  1  0  0  0  0
 46 45  1  0  0  0  0
 48 58  1  0  0  0  0
 58 49  1  0  0  0  0
 49 50  1  0  0  0  0
 50 51  1  0  0  0  0
 51 52  1  0  0  0  0
 52 53  1  0  0  0  0
 53 54  1  0  0  0  0
 54 55  1  0  0  0  0
 55 56  1  0  0  0  0
 56 57  1  0  0  0  0
 58 59  2  0  0  0  0
 61 60  1  0  0  0  0
 57 61  1  0  0  0  0
 63 62  1  0  0  0  0
 62 64  1  0  0  0  0
 64 65  1  0  0  0  0
 60 63  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0001338

> <DATABASE_NAME>
hmdb

> <SMILES>
CCCCCCCCCCCCCCCC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP(O)(O)=O)N1C=NC2=C1N=CN=C2N

> <INCHI_IDENTIFIER>
InChI=1S/C37H66N7O17P3S/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-28(46)65-21-20-39-27(45)18-19-40-35(49)32(48)37(2,3)23-58-64(55,56)61-63(53,54)57-22-26-31(60-62(50,51)52)30(47)36(59-26)44-25-43-29-33(38)41-24-42-34(29)44/h24-26,30-32,36,47-48H,4-23H2,1-3H3,(H,39,45)(H,40,49)(H,53,54)(H,55,56)(H2,38,41,42)(H2,50,51,52)/t26-,30-,31-,32+,36-/m1/s1

> <INCHI_KEY>
MNBKLUUYKPBKDU-BBECNAHFSA-N

> <FORMULA>
C37H66N7O17P3S

> <MOLECULAR_WEIGHT>
1005.943

> <EXACT_MASS>
1005.344873947

> <JCHEM_ACCEPTOR_COUNT>
17

> <JCHEM_ATOM_COUNT>
131

> <JCHEM_AVERAGE_POLARIZABILITY>
102.20039465235277

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
9

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-2-({[({[(3R)-3-[(2-{[2-(hexadecanoylsulfanyl)ethyl]carbamoyl}ethyl)carbamoyl]-3-hydroxy-2,2-dimethylpropoxy](hydroxy)phosphoryl}oxy)(hydroxy)phosphoryl]oxy}methyl)-4-hydroxyoxolan-3-yl]oxy}phosphonic acid

> <ALOGPS_LOGP>
2.35

> <JCHEM_LOGP>
0.5983093788520426

> <ALOGPS_LOGS>
-2.76

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-4

> <JCHEM_PKA>
1.9001207347761846

> <JCHEM_PKA_STRONGEST_ACIDIC>
0.8209787813398228

> <JCHEM_PKA_STRONGEST_BASIC>
4.006053268556904

> <JCHEM_POLAR_SURFACE_AREA>
363.6299999999999

> <JCHEM_REFRACTIVITY>
236.6479

> <JCHEM_ROTATABLE_BOND_COUNT>
34

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.74e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
palmitoyl-coa

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for HMDB0001338 (Palmityl-CoA)

HMDB0001338
     RDKit          3D
Palmityl-CoA
131133  0  0  0  0  0  0  0  0999 V2000
   -1.9096   -5.2375    1.6375 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8163   -5.3485    2.6730 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9918   -4.3761    3.8028 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9939   -2.9341    3.3181 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1684   -2.0183    4.4826 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4254   -2.2118    5.2602 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6156   -1.9553    4.3024 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8972   -2.1260    5.0586 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1251   -1.9287    4.2737 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4196   -0.6095    3.7039 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5181    0.0036    2.7145 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3081   -0.8139    1.4552 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3331   -0.0723    0.5710 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1068   -0.7884   -0.7558 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0868    0.0163   -1.5064 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8161   -0.5191   -2.8603 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5269   -1.4113   -3.2807 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4580    0.1876   -3.7690 S   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4423   -0.2129   -5.5053 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5007    0.4667   -6.3385 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4124    1.9010   -6.3437 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6063    2.7868   -5.2777 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9420    2.3726   -4.1339 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4144    4.2636   -5.4437 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8065    4.9253   -4.1236 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0850    4.3562   -3.0281 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6876    4.3875   -2.9352 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0095    4.9510   -3.8242 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0116    3.7356   -1.7649 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.0181    3.1351   -0.9642 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8157    4.6754   -0.9408 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0543    5.7621   -0.3969 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9198    5.2619   -1.7557 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3874    3.7877    0.2046 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1023    4.3008    1.0344 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0039    4.9148    2.0930 P   0  0  0  0  0  5  0  0  0  0  0  0
    3.8283    6.1394    1.6103 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1169    5.4650    3.4732 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1725    3.8460    2.8077 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7934    2.2408    2.4890 P   0  0  0  0  0  5  0  0  0  0  0  0
    2.3481    2.0670    2.1205 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0423    1.3870    3.9526 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8161    1.5803    1.2891 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0592    0.2379    1.5593 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9680   -0.3402    0.5007 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.2299   -1.6832    0.7449 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.2585   -2.3101   -0.4883 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.2376   -3.7260   -0.4348 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.3477   -4.4927   -0.6017 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0301   -5.7768   -0.4976 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.7227   -5.8678   -0.2647 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8851   -6.9602   -0.0753 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4449   -8.2542   -0.1269 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.5829   -6.7040    0.1451 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.1129   -5.4245    0.1795 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9222   -4.3619   -0.0036 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.2304   -4.5810   -0.2259 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0609   -1.6965   -1.1635 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.0720   -1.9034   -2.5408 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3311   -0.2139   -0.8349 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.1823    0.2085   -1.8398 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5068    1.3829   -2.8335 P   0  0  0  0  0  5  0  0  0  0  0  0
    6.4780    1.7940   -3.9333 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9269    2.6963   -1.9833 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1983    0.6534   -3.6295 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7689   -4.3105    1.0570 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9080   -5.1600    2.1318 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8312   -6.1610    1.0072 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1522   -5.2082    2.1757 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8953   -6.3742    3.1219 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8972   -4.5514    4.3922 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1293   -4.4603    4.4921 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0047   -2.6831    2.8582 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7355   -2.8101    2.5308 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2682   -2.1249    5.1483 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1839   -0.9608    4.1042 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4770   -1.3759    6.0072 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5300   -3.1823    5.7500 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5387   -2.6559    3.4412 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4217   -0.9560    3.9207 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9076   -3.1357    5.5831 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8934   -1.3709    5.9036 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2597   -2.7633    3.5099 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9912   -2.1529    4.9989 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4722    0.1161    4.5778 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4888   -0.5818    3.3252 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6720    0.5453    3.0932 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1718    0.8932    2.2813 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2847   -0.8991    0.9183 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8872   -1.8052    1.6440 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3625   -0.0347    1.0879 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7130    0.9364    0.2951 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7074   -1.8027   -0.5805 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0129   -0.8450   -1.3735 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1335   -0.0192   -0.9152 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4662    1.0735   -1.5628 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4259    0.0025   -5.9517 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5415   -1.3297   -5.5959 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5241    0.1893   -5.9445 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4347    0.0664   -7.3829 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1675    2.3450   -7.2975 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0562    4.5834   -6.2819 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3719    4.5384   -5.6480 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8848    4.7879   -3.9949 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6366    6.0288   -4.1996 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6310    3.8932   -2.2583 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5852    2.9146   -2.1941 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8032    2.1947   -0.8485 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9761    5.3756    0.0679 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3640    6.3958   -1.2413 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4992    6.4350    0.3105 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7296    5.6978   -1.1209 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4984    6.0581   -2.3906 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3769    4.5176   -2.4701 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8542    2.9256   -0.4332 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4082    3.2537    0.5528 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3990    4.7925    3.5788 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8416    0.4231    3.8161 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1034   -0.3245    1.5427 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5388    0.1772    2.5805 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9333    0.1950    0.5982 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1544   -1.9195   -1.0367 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.3627   -4.1156   -0.7970 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7419   -8.7265    0.7454 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5663   -8.7379   -1.0305 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0533   -5.3175    0.3630 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1050   -1.9563   -0.7054 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6789   -2.8238   -2.6639 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3537    0.3387   -0.8368 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3311    2.7705   -1.1088 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5489    1.3597   -3.8296 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  2  0
 16 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  2  0
 22 24  1  0
 24 25  1  0
 25 26  1  0
 26 27  1  0
 27 28  2  0
 27 29  1  0
 29 30  1  0
 29 31  1  0
 31 32  1  0
 31 33  1  0
 31 34  1  0
 34 35  1  0
 35 36  1  0
 36 37  2  0
 36 38  1  0
 36 39  1  0
 39 40  1  0
 40 41  2  0
 40 42  1  0
 40 43  1  0
 43 44  1  0
 44 45  1  0
 45 46  1  0
 46 47  1  0
 47 48  1  0
 48 49  1  0
 49 50  2  0
 50 51  1  0
 51 52  2  0
 52 53  1  0
 52 54  1  0
 54 55  2  0
 55 56  1  0
 56 57  2  0
 47 58  1  0
 58 59  1  0
 58 60  1  0
 60 61  1  0
 61 62  1  0
 62 63  2  0
 62 64  1  0
 62 65  1  0
 60 45  1  0
 57 48  1  0
 57 51  1  0
  1 66  1  0
  1 67  1  0
  1 68  1  0
  2 69  1  0
  2 70  1  0
  3 71  1  0
  3 72  1  0
  4 73  1  0
  4 74  1  0
  5 75  1  0
  5 76  1  0
  6 77  1  0
  6 78  1  0
  7 79  1  0
  7 80  1  0
  8 81  1  0
  8 82  1  0
  9 83  1  0
  9 84  1  0
 10 85  1  0
 10 86  1  0
 11 87  1  0
 11 88  1  0
 12 89  1  0
 12 90  1  0
 13 91  1  0
 13 92  1  0
 14 93  1  0
 14 94  1  0
 15 95  1  0
 15 96  1  0
 19 97  1  0
 19 98  1  0
 20 99  1  0
 20100  1  0
 21101  1  0
 24102  1  0
 24103  1  0
 25104  1  0
 25105  1  0
 26106  1  0
 29107  1  6
 30108  1  0
 32109  1  0
 32110  1  0
 32111  1  0
 33112  1  0
 33113  1  0
 33114  1  0
 34115  1  0
 34116  1  0
 38117  1  0
 42118  1  0
 44119  1  0
 44120  1  0
 45121  1  6
 47122  1  6
 49123  1  0
 53124  1  0
 53125  1  0
 55126  1  0
 58127  1  1
 59128  1  0
 60129  1  1
 64130  1  0
 65131  1  0
M  END
Download

PDB for HMDB0001338 (Palmityl-CoA)

HEADER    PROTEIN                                 04-SEP-20   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-20         0                                  
HETATM    1  C   UNK     0      29.439 -35.562   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      28.193 -34.657   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0      28.963 -37.026   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      26.947 -35.562   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      27.423 -37.026   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0      29.868 -38.272   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0      16.846 -43.105   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      18.233 -43.875   0.000  0.00  0.00           C+0
HETATM    9  N   UNK     0      15.513 -43.875   0.000  0.00  0.00           N+0
HETATM   10  C   UNK     0      14.179 -43.105   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      12.845 -43.875   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0      15.566 -40.795   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      14.179 -41.565   0.000  0.00  0.00           C+0
HETATM   14  N   UNK     0      15.566 -39.255   0.000  0.00  0.00           N+0
HETATM   15  O   UNK     0      12.898 -39.255   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0      14.232 -38.485   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      16.899 -36.945   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      14.796 -34.841   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      15.566 -36.175   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      16.336 -34.841   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      14.232 -36.945   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      12.898 -36.175   0.000  0.00  0.00           O+0
HETATM   23  O   UNK     0      18.233 -36.175   0.000  0.00  0.00           O+0
HETATM   24  O   UNK     0      21.313 -36.175   0.000  0.00  0.00           O+0
HETATM   25  O   UNK     0      24.393 -36.175   0.000  0.00  0.00           O+0
HETATM   26  O   UNK     0      19.773 -34.635   0.000  0.00  0.00           O+0
HETATM   27  O   UNK     0      19.773 -37.715   0.000  0.00  0.00           O+0
HETATM   28  O   UNK     0      22.853 -34.635   0.000  0.00  0.00           O+0
HETATM   29  O   UNK     0      22.853 -37.715   0.000  0.00  0.00           O+0
HETATM   30  P   UNK     0      19.773 -36.175   0.000  0.00  0.00           P+0
HETATM   31  P   UNK     0      22.853 -36.175   0.000  0.00  0.00           P+0
HETATM   32  C   UNK     0      25.482 -35.086   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0      26.518 -38.272   0.000  0.00  0.00           O+0
HETATM   34  O   UNK     0      24.978 -39.813   0.000  0.00  0.00           O+0
HETATM   35  O   UNK     0      28.058 -39.813   0.000  0.00  0.00           O+0
HETATM   36  P   UNK     0      26.518 -39.813   0.000  0.00  0.00           P+0
HETATM   37  O   UNK     0      26.518 -41.353   0.000  0.00  0.00           O+0
HETATM   38  N   UNK     0      30.903 -35.086   0.000  0.00  0.00           N+0
HETATM   39  C   UNK     0      32.048 -36.116   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      31.530 -33.679   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      33.382 -35.346   0.000  0.00  0.00           C+0
HETATM   42  N   UNK     0      32.048 -37.656   0.000  0.00  0.00           N+0
HETATM   43  N   UNK     0      33.062 -33.840   0.000  0.00  0.00           N+0
HETATM   44  C   UNK     0      34.716 -36.116   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      33.382 -38.426   0.000  0.00  0.00           C+0
HETATM   46  N   UNK     0      34.716 -37.656   0.000  0.00  0.00           N+0
HETATM   47  N   UNK     0      36.049 -35.346   0.000  0.00  0.00           N+0
HETATM   48  S   UNK     0      19.567 -43.105   0.000  0.00  0.00           S+0
HETATM   49  C   UNK     0      22.234 -43.105   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      23.568 -43.875   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0      24.902 -43.105   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0      26.235 -43.875   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0      27.569 -43.105   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0      28.903 -43.875   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0      30.236 -43.105   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0      31.570 -43.875   0.000  0.00  0.00           C+0
HETATM   57  C   UNK     0      32.904 -43.105   0.000  0.00  0.00           C+0
HETATM   58  C   UNK     0      20.901 -43.875   0.000  0.00  0.00           C+0
HETATM   59  O   UNK     0      20.901 -45.415   0.000  0.00  0.00           O+0
HETATM   60  C   UNK     0      35.571 -43.105   0.000  0.00  0.00           C+0
HETATM   61  C   UNK     0      34.238 -43.875   0.000  0.00  0.00           C+0
HETATM   62  C   UNK     0      38.238 -43.105   0.000  0.00  0.00           C+0
HETATM   63  C   UNK     0      36.905 -43.875   0.000  0.00  0.00           C+0
HETATM   64  C   UNK     0      39.572 -43.875   0.000  0.00  0.00           C+0
HETATM   65  C   UNK     0      40.905 -43.105   0.000  0.00  0.00           C+0
CONECT    1   38    2    3                                                  
CONECT    2    1    4                                                       
CONECT    3    1    5    6                                                  
CONECT    4    2   32    5                                                  
CONECT    5    3    4   33                                                  
CONECT    6    3                                                            
CONECT    7    9    8                                                       
CONECT    8    7   48                                                       
CONECT    9    7   10                                                       
CONECT   10    9   13   11                                                  
CONECT   11   10                                                            
CONECT   12   14   13                                                       
CONECT   13   10   12                                                       
CONECT   14   12   16                                                       
CONECT   15   16                                                            
CONECT   16   14   15   21                                                  
CONECT   17   19   23                                                       
CONECT   18   19                                                            
CONECT   19   17   18   21   20                                             
CONECT   20   19                                                            
CONECT   21   16   19   22                                                  
CONECT   22   21                                                            
CONECT   23   17   30                                                       
CONECT   24   30   31                                                       
CONECT   25   31   32                                                       
CONECT   26   30                                                            
CONECT   27   30                                                            
CONECT   28   31                                                            
CONECT   29   31                                                            
CONECT   30   23   24   26   27                                             
CONECT   31   24   25   28   29                                             
CONECT   32    4   25                                                       
CONECT   33    5   36                                                       
CONECT   34   36                                                            
CONECT   35   36                                                            
CONECT   36   33   34   35   37                                             
CONECT   37   36                                                            
CONECT   38    1   39   40                                                  
CONECT   39   38   41   42                                                  
CONECT   40   38   43                                                       
CONECT   41   39   44   43                                                  
CONECT   42   39   45                                                       
CONECT   43   40   41                                                       
CONECT   44   41   46   47                                                  
CONECT   45   42   46                                                       
CONECT   46   44   45                                                       
CONECT   47   44                                                            
CONECT   48    8   58                                                       
CONECT   49   58   50                                                       
CONECT   50   49   51                                                       
CONECT   51   50   52                                                       
CONECT   52   51   53                                                       
CONECT   53   52   54                                                       
CONECT   54   53   55                                                       
CONECT   55   54   56                                                       
CONECT   56   55   57                                                       
CONECT   57   56   61                                                       
CONECT   58   48   49   59                                                  
CONECT   59   58                                                            
CONECT   60   61   63                                                       
CONECT   61   60   57                                                       
CONECT   62   63   64                                                       
CONECT   63   62   60                                                       
CONECT   64   62   65                                                       
CONECT   65   64                                                            
MASTER        0    0    0    0    0    0    0    0   65    0  134    0
END
Download

3D PDB for HMDB0001338 (Palmityl-CoA)

COMPND    HMDB0001338
HETATM    1  C1  UNL     1      -1.910  -5.238   1.637  1.00  0.00           C  
HETATM    2  C2  UNL     1      -0.816  -5.349   2.673  1.00  0.00           C  
HETATM    3  C3  UNL     1      -0.992  -4.376   3.803  1.00  0.00           C  
HETATM    4  C4  UNL     1      -0.994  -2.934   3.318  1.00  0.00           C  
HETATM    5  C5  UNL     1      -1.168  -2.018   4.483  1.00  0.00           C  
HETATM    6  C6  UNL     1      -2.425  -2.212   5.260  1.00  0.00           C  
HETATM    7  C7  UNL     1      -3.616  -1.955   4.302  1.00  0.00           C  
HETATM    8  C8  UNL     1      -4.897  -2.126   5.059  1.00  0.00           C  
HETATM    9  C9  UNL     1      -6.125  -1.929   4.274  1.00  0.00           C  
HETATM   10  C10 UNL     1      -6.420  -0.609   3.704  1.00  0.00           C  
HETATM   11  C11 UNL     1      -5.518   0.004   2.715  1.00  0.00           C  
HETATM   12  C12 UNL     1      -5.308  -0.814   1.455  1.00  0.00           C  
HETATM   13  C13 UNL     1      -4.333  -0.072   0.571  1.00  0.00           C  
HETATM   14  C14 UNL     1      -4.107  -0.788  -0.756  1.00  0.00           C  
HETATM   15  C15 UNL     1      -3.087   0.016  -1.506  1.00  0.00           C  
HETATM   16  C16 UNL     1      -2.816  -0.519  -2.860  1.00  0.00           C  
HETATM   17  O1  UNL     1      -3.527  -1.411  -3.281  1.00  0.00           O  
HETATM   18  S1  UNL     1      -1.458   0.188  -3.769  1.00  0.00           S  
HETATM   19  C17 UNL     1      -1.442  -0.213  -5.505  1.00  0.00           C  
HETATM   20  C18 UNL     1      -2.501   0.467  -6.339  1.00  0.00           C  
HETATM   21  N1  UNL     1      -2.412   1.901  -6.344  1.00  0.00           N  
HETATM   22  C19 UNL     1      -2.606   2.787  -5.278  1.00  0.00           C  
HETATM   23  O2  UNL     1      -2.942   2.373  -4.134  1.00  0.00           O  
HETATM   24  C20 UNL     1      -2.414   4.264  -5.444  1.00  0.00           C  
HETATM   25  C21 UNL     1      -2.806   4.925  -4.124  1.00  0.00           C  
HETATM   26  N2  UNL     1      -2.085   4.356  -3.028  1.00  0.00           N  
HETATM   27  C22 UNL     1      -0.688   4.387  -2.935  1.00  0.00           C  
HETATM   28  O3  UNL     1      -0.010   4.951  -3.824  1.00  0.00           O  
HETATM   29  C23 UNL     1      -0.012   3.736  -1.765  1.00  0.00           C  
HETATM   30  O4  UNL     1      -1.018   3.135  -0.964  1.00  0.00           O  
HETATM   31  C24 UNL     1       0.816   4.675  -0.941  1.00  0.00           C  
HETATM   32  C25 UNL     1      -0.054   5.762  -0.397  1.00  0.00           C  
HETATM   33  C26 UNL     1       1.920   5.262  -1.756  1.00  0.00           C  
HETATM   34  C27 UNL     1       1.387   3.788   0.205  1.00  0.00           C  
HETATM   35  O5  UNL     1       2.102   4.301   1.034  1.00  0.00           O  
HETATM   36  P1  UNL     1       3.004   4.915   2.093  1.00  0.00           P  
HETATM   37  O6  UNL     1       3.828   6.139   1.610  1.00  0.00           O  
HETATM   38  O7  UNL     1       2.117   5.465   3.473  1.00  0.00           O  
HETATM   39  O8  UNL     1       4.173   3.846   2.808  1.00  0.00           O  
HETATM   40  P2  UNL     1       3.793   2.241   2.489  1.00  0.00           P  
HETATM   41  O9  UNL     1       2.348   2.067   2.121  1.00  0.00           O  
HETATM   42  O10 UNL     1       4.042   1.387   3.953  1.00  0.00           O  
HETATM   43  O11 UNL     1       4.816   1.580   1.289  1.00  0.00           O  
HETATM   44  C28 UNL     1       5.059   0.238   1.559  1.00  0.00           C  
HETATM   45  C29 UNL     1       5.968  -0.340   0.501  1.00  0.00           C  
HETATM   46  O12 UNL     1       6.230  -1.683   0.745  1.00  0.00           O  
HETATM   47  C30 UNL     1       6.259  -2.310  -0.488  1.00  0.00           C  
HETATM   48  N3  UNL     1       6.238  -3.726  -0.435  1.00  0.00           N  
HETATM   49  C31 UNL     1       7.348  -4.493  -0.602  1.00  0.00           C  
HETATM   50  N4  UNL     1       7.030  -5.777  -0.498  1.00  0.00           N  
HETATM   51  C32 UNL     1       5.723  -5.868  -0.265  1.00  0.00           C  
HETATM   52  C33 UNL     1       4.885  -6.960  -0.075  1.00  0.00           C  
HETATM   53  N5  UNL     1       5.445  -8.254  -0.127  1.00  0.00           N  
HETATM   54  N6  UNL     1       3.583  -6.704   0.145  1.00  0.00           N  
HETATM   55  C34 UNL     1       3.113  -5.424   0.179  1.00  0.00           C  
HETATM   56  N7  UNL     1       3.922  -4.362  -0.004  1.00  0.00           N  
HETATM   57  C35 UNL     1       5.230  -4.581  -0.226  1.00  0.00           C  
HETATM   58  C36 UNL     1       5.061  -1.696  -1.164  1.00  0.00           C  
HETATM   59  O13 UNL     1       5.072  -1.903  -2.541  1.00  0.00           O  
HETATM   60  C37 UNL     1       5.331  -0.214  -0.835  1.00  0.00           C  
HETATM   61  O14 UNL     1       6.182   0.209  -1.840  1.00  0.00           O  
HETATM   62  P3  UNL     1       5.507   1.383  -2.833  1.00  0.00           P  
HETATM   63  O15 UNL     1       6.478   1.794  -3.933  1.00  0.00           O  
HETATM   64  O16 UNL     1       4.927   2.696  -1.983  1.00  0.00           O  
HETATM   65  O17 UNL     1       4.198   0.653  -3.629  1.00  0.00           O  
HETATM   66  H1  UNL     1      -1.769  -4.311   1.057  1.00  0.00           H  
HETATM   67  H2  UNL     1      -2.908  -5.160   2.132  1.00  0.00           H  
HETATM   68  H3  UNL     1      -1.831  -6.161   1.007  1.00  0.00           H  
HETATM   69  H4  UNL     1       0.152  -5.208   2.176  1.00  0.00           H  
HETATM   70  H5  UNL     1      -0.895  -6.374   3.122  1.00  0.00           H  
HETATM   71  H6  UNL     1      -1.897  -4.551   4.392  1.00  0.00           H  
HETATM   72  H7  UNL     1      -0.129  -4.460   4.492  1.00  0.00           H  
HETATM   73  H8  UNL     1      -0.005  -2.683   2.858  1.00  0.00           H  
HETATM   74  H9  UNL     1      -1.736  -2.810   2.531  1.00  0.00           H  
HETATM   75  H10 UNL     1      -0.268  -2.125   5.148  1.00  0.00           H  
HETATM   76  H11 UNL     1      -1.184  -0.961   4.104  1.00  0.00           H  
HETATM   77  H12 UNL     1      -2.477  -1.376   6.007  1.00  0.00           H  
HETATM   78  H13 UNL     1      -2.530  -3.182   5.750  1.00  0.00           H  
HETATM   79  H14 UNL     1      -3.539  -2.656   3.441  1.00  0.00           H  
HETATM   80  H15 UNL     1      -3.422  -0.956   3.921  1.00  0.00           H  
HETATM   81  H16 UNL     1      -4.908  -3.136   5.583  1.00  0.00           H  
HETATM   82  H17 UNL     1      -4.893  -1.371   5.904  1.00  0.00           H  
HETATM   83  H18 UNL     1      -6.260  -2.763   3.510  1.00  0.00           H  
HETATM   84  H19 UNL     1      -6.991  -2.153   4.999  1.00  0.00           H  
HETATM   85  H20 UNL     1      -6.472   0.116   4.578  1.00  0.00           H  
HETATM   86  H21 UNL     1      -7.489  -0.582   3.325  1.00  0.00           H  
HETATM   87  H22 UNL     1      -4.672   0.545   3.093  1.00  0.00           H  
HETATM   88  H23 UNL     1      -6.172   0.893   2.281  1.00  0.00           H  
HETATM   89  H24 UNL     1      -6.285  -0.899   0.918  1.00  0.00           H  
HETATM   90  H25 UNL     1      -4.887  -1.805   1.644  1.00  0.00           H  
HETATM   91  H26 UNL     1      -3.362  -0.035   1.088  1.00  0.00           H  
HETATM   92  H27 UNL     1      -4.713   0.936   0.295  1.00  0.00           H  
HETATM   93  H28 UNL     1      -3.707  -1.803  -0.580  1.00  0.00           H  
HETATM   94  H29 UNL     1      -5.013  -0.845  -1.374  1.00  0.00           H  
HETATM   95  H30 UNL     1      -2.134  -0.019  -0.915  1.00  0.00           H  
HETATM   96  H31 UNL     1      -3.466   1.073  -1.563  1.00  0.00           H  
HETATM   97  H32 UNL     1      -0.426   0.003  -5.952  1.00  0.00           H  
HETATM   98  H33 UNL     1      -1.541  -1.330  -5.596  1.00  0.00           H  
HETATM   99  H34 UNL     1      -3.524   0.189  -5.945  1.00  0.00           H  
HETATM  100  H35 UNL     1      -2.435   0.066  -7.383  1.00  0.00           H  
HETATM  101  H36 UNL     1      -2.168   2.345  -7.298  1.00  0.00           H  
HETATM  102  H37 UNL     1      -3.056   4.583  -6.282  1.00  0.00           H  
HETATM  103  H38 UNL     1      -1.372   4.538  -5.648  1.00  0.00           H  
HETATM  104  H39 UNL     1      -3.885   4.788  -3.995  1.00  0.00           H  
HETATM  105  H40 UNL     1      -2.637   6.029  -4.200  1.00  0.00           H  
HETATM  106  H41 UNL     1      -2.631   3.893  -2.258  1.00  0.00           H  
HETATM  107  H42 UNL     1       0.585   2.915  -2.194  1.00  0.00           H  
HETATM  108  H43 UNL     1      -0.803   2.195  -0.849  1.00  0.00           H  
HETATM  109  H44 UNL     1      -0.976   5.376   0.068  1.00  0.00           H  
HETATM  110  H45 UNL     1      -0.364   6.396  -1.241  1.00  0.00           H  
HETATM  111  H46 UNL     1       0.499   6.435   0.311  1.00  0.00           H  
HETATM  112  H47 UNL     1       2.730   5.698  -1.121  1.00  0.00           H  
HETATM  113  H48 UNL     1       1.498   6.058  -2.391  1.00  0.00           H  
HETATM  114  H49 UNL     1       2.377   4.518  -2.470  1.00  0.00           H  
HETATM  115  H50 UNL     1       1.854   2.926  -0.433  1.00  0.00           H  
HETATM  116  H51 UNL     1       0.408   3.254   0.553  1.00  0.00           H  
HETATM  117  H52 UNL     1       1.399   4.792   3.579  1.00  0.00           H  
HETATM  118  H53 UNL     1       3.842   0.423   3.816  1.00  0.00           H  
HETATM  119  H54 UNL     1       4.103  -0.324   1.543  1.00  0.00           H  
HETATM  120  H55 UNL     1       5.539   0.177   2.581  1.00  0.00           H  
HETATM  121  H56 UNL     1       6.933   0.195   0.598  1.00  0.00           H  
HETATM  122  H57 UNL     1       7.154  -1.920  -1.037  1.00  0.00           H  
HETATM  123  H58 UNL     1       8.363  -4.116  -0.797  1.00  0.00           H  
HETATM  124  H59 UNL     1       5.742  -8.727   0.745  1.00  0.00           H  
HETATM  125  H60 UNL     1       5.566  -8.738  -1.030  1.00  0.00           H  
HETATM  126  H61 UNL     1       2.053  -5.317   0.363  1.00  0.00           H  
HETATM  127  H62 UNL     1       4.105  -1.956  -0.705  1.00  0.00           H  
HETATM  128  H63 UNL     1       4.679  -2.824  -2.664  1.00  0.00           H  
HETATM  129  H64 UNL     1       4.354   0.339  -0.837  1.00  0.00           H  
HETATM  130  H65 UNL     1       5.331   2.771  -1.109  1.00  0.00           H  
HETATM  131  H66 UNL     1       3.549   1.360  -3.830  1.00  0.00           H  
CONECT    1    2   66   67   68
CONECT    2    3   69   70
CONECT    3    4   71   72
CONECT    4    5   73   74
CONECT    5    6   75   76
CONECT    6    7   77   78
CONECT    7    8   79   80
CONECT    8    9   81   82
CONECT    9   10   83   84
CONECT   10   11   85   86
CONECT   11   12   87   88
CONECT   12   13   89   90
CONECT   13   14   91   92
CONECT   14   15   93   94
CONECT   15   16   95   96
CONECT   16   17   17   18
CONECT   18   19
CONECT   19   20   97   98
CONECT   20   21   99  100
CONECT   21   22  101
CONECT   22   23   23   24
CONECT   24   25  102  103
CONECT   25   26  104  105
CONECT   26   27  106
CONECT   27   28   28   29
CONECT   29   30   31  107
CONECT   30  108
CONECT   31   32   33   34
CONECT   32  109  110  111
CONECT   33  112  113  114
CONECT   34   35  115  116
CONECT   35   36
CONECT   36   37   37   38   39
CONECT   38  117
CONECT   39   40
CONECT   40   41   41   42   43
CONECT   42  118
CONECT   43   44
CONECT   44   45  119  120
CONECT   45   46   60  121
CONECT   46   47
CONECT   47   48   58  122
CONECT   48   49   57
CONECT   49   50   50  123
CONECT   50   51
CONECT   51   52   52   57
CONECT   52   53   54
CONECT   53  124  125
CONECT   54   55   55
CONECT   55   56  126
CONECT   56   57   57
CONECT   58   59   60  127
CONECT   59  128
CONECT   60   61  129
CONECT   61   62
CONECT   62   63   63   64   65
CONECT   64  130
CONECT   65  131
END
Download

SMILES for HMDB0001338 (Palmityl-CoA)

CCCCCCCCCCCCCCCC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP(O)(O)=O)N1C=NC2=C1N=CN=C2N
Download

INCHI for HMDB0001338 (Palmityl-CoA)

InChI=1S/C37H66N7O17P3S/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-28(46)65-21-20-39-27(45)18-19-40-35(49)32(48)37(2,3)23-58-64(55,56)61-63(53,54)57-22-26-31(60-62(50,51)52)30(47)36(59-26)44-25-43-29-33(38)41-24-42-34(29)44/h24-26,30-32,36,47-48H,4-23H2,1-3H3,(H,39,45)(H,40,49)(H,53,54)(H,55,56)(H2,38,41,42)(H2,50,51,52)/t26-,30-,31-,32+,36-/m1/s1
Download
View in JSmolView Stereo Labels
Synonyms
Chemical FormulaC37H66N7O17P3S
Average Molecular Weight1005.943
Monoisotopic Molecular Weight1005.344873947
IUPAC Name{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-2-({[({[(3R)-3-[(2-{[2-(hexadecanoylsulfanyl)ethyl]carbamoyl}ethyl)carbamoyl]-3-hydroxy-2,2-dimethylpropoxy](hydroxy)phosphoryl}oxy)(hydroxy)phosphoryl]oxy}methyl)-4-hydroxyoxolan-3-yl]oxy}phosphonic acid
Traditional Namepalmitoyl-coa
CAS Registry Number1763-10-6
SMILES
CCCCCCCCCCCCCCCC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP(O)(O)=O)N1C=NC2=C1N=CN=C2N
InChI Identifier
InChI=1S/C37H66N7O17P3S/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-28(46)65-21-20-39-27(45)18-19-40-35(49)32(48)37(2,3)23-58-64(55,56)61-63(53,54)57-22-26-31(60-62(50,51)52)30(47)36(59-26)44-25-43-29-33(38)41-24-42-34(29)44/h24-26,30-32,36,47-48H,4-23H2,1-3H3,(H,39,45)(H,40,49)(H,53,54)(H,55,56)(H2,38,41,42)(H2,50,51,52)/t26-,30-,31-,32+,36-/m1/s1
InChI KeyMNBKLUUYKPBKDU-BBECNAHFSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as hexoses. These are monosaccharides in which the sugar unit is a is a six-carbon containing moeity.
KingdomOrganic compounds
Super ClassOrganic oxygen compounds
ClassOrganooxygen compounds
Sub ClassCarbohydrates and carbohydrate conjugates
Direct ParentHexoses
Alternative Parents
Substituents
  • Hexose monosaccharide
  • Oxane
  • Secondary alcohol
  • Hemiacetal
  • Oxacycle
  • Organoheterocyclic compound
  • Polyol
  • Hydrocarbon derivative
  • Alcohol
  • Aliphatic heteromonocyclic compound
Molecular FrameworkAliphatic heteromonocyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
Source
Process
Naturally occurring process
RoleNot Available
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
Predicted Chromatographic Properties
Spectra
Biological Properties
Cellular Locations
  • Extracellular
  • Membrane
Biospecimen LocationsNot Available
Tissue Locations
  • Brain
  • Erythrocyte
  • Fibroblasts
  • Heart
  • Kidney
  • Liver
  • Lung
  • Neuron
  • Pancreas
  • Placenta
  • Skeletal Muscle
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB022562
KNApSAcK IDC00007462
Chemspider ID559149
KEGG Compound IDC00154
BioCyc IDPALMITYL-COA
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound644109
PDB IDNot Available
ChEBI ID15525
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References

Only showing the first 10 proteins. There are 150 proteins in total.

Show all enzymes and transporters

Enzymes

Enzyme Details
1. 3-ketoacyl-CoA thiolase, mitochondrial
General function:
Involved in transferase activity, transferring acyl groups other than amino-acyl groups
Specific function:
Abolishes BNIP3-mediated apoptosis and mitochondrial damage.
Gene Name:
ACAA2
Uniprot ID:
P42765
Molecular weight:
41923.82
Enzyme Details
2. 3-ketoacyl-CoA thiolase, peroxisomal
General function:
Involved in transferase activity, transferring acyl groups other than amino-acyl groups
Specific function:
Not Available
Gene Name:
ACAA1
Uniprot ID:
P09110
Molecular weight:
34664.46
Enzyme Details
3. Trifunctional enzyme subunit beta, mitochondrial
General function:
Involved in transferase activity, transferring acyl groups other than amino-acyl groups
Specific function:
Not Available
Gene Name:
HADHB
Uniprot ID:
P55084
Molecular weight:
51293.955
Enzyme Details
4. Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial
General function:
Involved in oxidoreductase activity
Specific function:
Plays a role in valine and pyrimidine metabolism. Binds fatty acyl-CoA.
Gene Name:
ALDH6A1
Uniprot ID:
Q02252
Molecular weight:
57839.31
Enzyme Details
5. Long-chain specific acyl-CoA dehydrogenase, mitochondrial
General function:
Involved in acyl-CoA dehydrogenase activity
Specific function:
Not Available
Gene Name:
ACADL
Uniprot ID:
P28330
Molecular weight:
47655.275
Reactions
Palmityl-CoA + FAD → (2E)-Hexadecenoyl-CoA + FADHdetails
Enzyme Details
6. Short-chain specific acyl-CoA dehydrogenase, mitochondrial
General function:
Involved in acyl-CoA dehydrogenase activity
Specific function:
Not Available
Gene Name:
ACADS
Uniprot ID:
P16219
Molecular weight:
44296.705
Enzyme Details
7. Medium-chain specific acyl-CoA dehydrogenase, mitochondrial
General function:
Involved in acyl-CoA dehydrogenase activity
Specific function:
This enzyme is specific for acyl chain lengths of 4 to 16.
Gene Name:
ACADM
Uniprot ID:
P11310
Molecular weight:
46587.98
Reactions
Palmityl-CoA + FAD → (2E)-Hexadecenoyl-CoA + FADHdetails
Enzyme Details
8. Peroxisomal acyl-coenzyme A oxidase 1
General function:
Involved in acyl-CoA dehydrogenase activity
Specific function:
Catalyzes the desaturation of acyl-CoAs to 2-trans-enoyl-CoAs. Isoform 1 shows highest activity against medium-chain fatty acyl-CoAs and activity decreases with increasing chain length. Isoform 2 is active against a much broader range of substrates and shows activity towards very long-chain acyl-CoAs. Isoform 2 is twice as active as isoform 1 against 16-hydroxy-palmitoyl-CoA and is 25% more active against 1,16-hexadecanodioyl-CoA.
Gene Name:
ACOX1
Uniprot ID:
Q15067
Molecular weight:
70135.205
Reactions
Palmityl-CoA + FAD → (2E)-Hexadecenoyl-CoA + FADHdetails
Enzyme Details
9. Peroxisomal acyl-coenzyme A oxidase 2
General function:
Involved in acyl-CoA dehydrogenase activity
Specific function:
Oxidizes the CoA esters of the bile acid intermediates di- and tri-hydroxycholestanoic acids.
Gene Name:
ACOX2
Uniprot ID:
Q99424
Molecular weight:
76826.14
Enzyme Details
10. Isovaleryl-CoA dehydrogenase, mitochondrial
General function:
Involved in acyl-CoA dehydrogenase activity
Specific function:
Not Available
Gene Name:
IVD
Uniprot ID:
P26440
Molecular weight:
43055.325

Transporters

Enzyme Details
1. Long-chain fatty acid transport protein 1
General function:
Lipid transport and metabolism
Specific function:
Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. The LFCA import appears to be hormone-regulated in a tissue-specific manner. In adipocytes, but not myocytes, insulin induces a rapid translocation of FATP1 from intracellular compartments to the plasma membrane, paralleled by increased LFCA uptake. May act directly as a bona fide transporter, or alternatively, in a cytoplasmic or membrane- associated multimeric protein complex to trap and draw fatty acids towards accumulation. Plays a pivotal role in regulating available LFCA substrates from exogenous sources in tissues undergoing high levels of beta-oxidation or triglyceride synthesis. May be involved in regulation of cholesterol metabolism. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids
Gene Name:
SLC27A1
Uniprot ID:
Q6PCB7
Molecular weight:
71107.5

Only showing the first 10 proteins. There are 150 proteins in total.

Show all enzymes and transporters