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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2013-03-07 21:35:18 UTC
Update Date2023-02-21 17:29:34 UTC
HMDB IDHMDB0059892
Secondary Accession Numbers
  • HMDB59892
Metabolite Identification
Common NameIsothiocyanatocyclohexane
DescriptionIsothiocyanatocyclohexane belongs to the class of organic compounds known as isothiocyanates. These are organic compounds containing the isothiocyanate group, an isocyanate analogue with the general formula RN=C=S. Isothiocyanatocyclohexane is an extremely weak basic (essentially neutral) compound (based on its pKa).
Structure
Data?1677000574
SynonymsNot Available
Chemical FormulaC7H11NS
Average Molecular Weight141.234
Monoisotopic Molecular Weight141.061220047
IUPAC Nameisothiocyanatocyclohexane
Traditional Namecyclohexane, isothiocyanato-
CAS Registry NumberNot Available
SMILES
[H]C1([H])C([H])([H])C([H])([H])C([H])(N=C=S)C([H])([H])C1([H])[H]
InChI Identifier
InChI=1S/C7H11NS/c9-6-8-7-4-2-1-3-5-7/h7H,1-5H2
InChI KeyMZSJGCPBOVTKHR-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as isothiocyanates. These are organic compounds containing the isothiocyanate group, an isocyanate analogue with the general formula RN=C=S.
KingdomOrganic compounds
Super ClassOrganosulfur compounds
ClassIsothiocyanates
Sub ClassNot Available
Direct ParentIsothiocyanates
Alternative Parents
Substituents
  • Isothiocyanate
  • Organic 1,3-dipolar compound
  • Propargyl-type 1,3-dipolar organic compound
  • Organic nitrogen compound
  • Organopnictogen compound
  • Hydrocarbon derivative
  • Organonitrogen compound
  • Aliphatic homomonocyclic compound
Molecular FrameworkAliphatic homomonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.051 g/LALOGPS
logP3.58ALOGPS
logP2.87ChemAxon
logS-3.4ALOGPS
pKa (Strongest Basic)-3.4ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count1ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area12.36 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity42.34 m³·mol⁻¹ChemAxon
Polarizability16.06 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+129.99131661259
DarkChem[M-H]-123.30431661259
DeepCCS[M+H]+134.65230932474
DeepCCS[M-H]-132.25630932474
DeepCCS[M-2H]-165.94430932474
DeepCCS[M+Na]+140.62530932474
AllCCS[M+H]+131.632859911
AllCCS[M+H-H2O]+127.532859911
AllCCS[M+NH4]+135.532859911
AllCCS[M+Na]+136.632859911
AllCCS[M-H]-131.232859911
AllCCS[M+Na-2H]-133.532859911
AllCCS[M+HCOO]-136.032859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Isothiocyanatocyclohexane[H]C1([H])C([H])([H])C([H])([H])C([H])(N=C=S)C([H])([H])C1([H])[H]1809.5Standard polar33892256
Isothiocyanatocyclohexane[H]C1([H])C([H])([H])C([H])([H])C([H])(N=C=S)C([H])([H])C1([H])[H]1314.8Standard non polar33892256
Isothiocyanatocyclohexane[H]C1([H])C([H])([H])C([H])([H])C([H])(N=C=S)C([H])([H])C1([H])[H]1252.3Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Isothiocyanatocyclohexane GC-MS (Non-derivatized) - 70eV, Positivesplash10-001l-9100000000-97f3e0194211bfa924b72017-09-20Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Isothiocyanatocyclohexane GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Isothiocyanatocyclohexane 10V, Positive-QTOFsplash10-0006-2900000000-698437c74939e5f676a32017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Isothiocyanatocyclohexane 20V, Positive-QTOFsplash10-000w-9300000000-01a4f97088157cdc76822017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Isothiocyanatocyclohexane 40V, Positive-QTOFsplash10-000x-9000000000-a4b57a542441569071492017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Isothiocyanatocyclohexane 10V, Negative-QTOFsplash10-0006-2900000000-da675166995a4b73f1e62017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Isothiocyanatocyclohexane 20V, Negative-QTOFsplash10-0005-9500000000-17358c301fe0ab1cb7f92017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Isothiocyanatocyclohexane 40V, Negative-QTOFsplash10-0a4i-9000000000-445eb5685c8a0d88de6a2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Isothiocyanatocyclohexane 10V, Positive-QTOFsplash10-0006-1900000000-9d27bc1f271cc6b67f2a2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Isothiocyanatocyclohexane 20V, Positive-QTOFsplash10-0a4i-9100000000-03c735ebf8ce66e5b8af2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Isothiocyanatocyclohexane 40V, Positive-QTOFsplash10-0a4i-9000000000-5d06701dad1bf824f78d2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Isothiocyanatocyclohexane 10V, Negative-QTOFsplash10-0a4l-9700000000-8d09d7683bc22ee3280a2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Isothiocyanatocyclohexane 20V, Negative-QTOFsplash10-0a4i-9000000000-286b63d3516de7d14a122021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Isothiocyanatocyclohexane 40V, Negative-QTOFsplash10-0a4i-9000000000-286b63d3516de7d14a122021-10-12Wishart LabView Spectrum

IR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+)2023-02-04FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+)2023-02-04FELIX labView Spectrum
Biological Properties
Cellular Locations
  • Membrane (predicted from logP)
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound14289
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available