Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2013-07-04 19:03:17 UTC
Update Date2021-09-14 15:18:56 UTC
HMDB IDHMDB0060848
Secondary Accession Numbers
  • HMDB60848
Metabolite Identification
Common NameN-Oxide abiraterone sulfate
DescriptionN-Oxide abiraterone sulfate is a metabolite of abiraterone. Abiraterone is a drug used in castration-resistant prostate cancer (formerly hormone-resistant or hormone-refractory prostate cancer) (prostate cancer not responding to androgen deprivation or treatment with antiandrogens). It is formulated as the prodrug abiraterone acetate and marketed under the trade name Zytiga. After an expedited six-month review, abiraterone was approved by the U.S. Food and Drug Administration (FDA) in April 2011. (Wikipedia)
Structure
Data?1563866113
Synonyms
ValueSource
3-Hydroxy-1-nitrosopyrrolidineHMDB
N-Oxide abiraterone sulfuric acidGenerator
N-Oxide abiraterone sulphateGenerator
N-Oxide abiraterone sulphuric acidGenerator
Chemical FormulaC24H31NO5S
Average Molecular Weight445.572
Monoisotopic Molecular Weight445.192293797
IUPAC Name3-[2,15-dimethyl-5-(sulfooxy)tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadeca-7,13-dien-14-yl]pyridin-1-ium-1-olate
Traditional Name3-[2,15-dimethyl-5-(sulfooxy)tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadeca-7,13-dien-14-yl]pyridin-1-ium-1-olate
CAS Registry NumberNot Available
SMILES
CC12CCC3C(CC=C4CC(CCC34C)OS(O)(=O)=O)C1CC=C2C1=C[N+]([O-])=CC=C1
InChI Identifier
InChI=1S/C24H31NO5S/c1-23-11-9-18(30-31(27,28)29)14-17(23)5-6-19-21-8-7-20(16-4-3-13-25(26)15-16)24(21,2)12-10-22(19)23/h3-5,7,13,15,18-19,21-22H,6,8-12,14H2,1-2H3,(H,27,28,29)
InChI KeyAEEMBGRHVQPUBV-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as pyrrolidines. Pyrrolidines are compounds containing a pyrrolidine ring, which is a five-membered saturated aliphatic heterocycle with one nitrogen atom and four carbon atoms.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassPyrrolidines
Sub ClassNot Available
Direct ParentPyrrolidines
Alternative Parents
Substituents
  • Pyrrolidine
  • Organic n-nitroso compound
  • Secondary alcohol
  • Organic nitroso compound
  • Azacycle
  • Organic nitrogen compound
  • Organic oxygen compound
  • Organopnictogen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organonitrogen compound
  • Alcohol
  • Aliphatic heteromonocyclic compound
Molecular FrameworkAliphatic heteromonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.00038 g/LALOGPS
logP1.73ALOGPS
logP0.65ChemAxon
logS-6.1ALOGPS
pKa (Strongest Acidic)-1.4ChemAxon
pKa (Strongest Basic)0.87ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area89.06 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity120.98 m³·mol⁻¹ChemAxon
Polarizability49.2 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+198.87931661259
DarkChem[M-H]-192.65331661259
DeepCCS[M-2H]-241.51230932474
DeepCCS[M+Na]+217.92930932474
AllCCS[M+H]+208.332859911
AllCCS[M+H-H2O]+206.232859911
AllCCS[M+NH4]+210.332859911
AllCCS[M+Na]+210.932859911
AllCCS[M-H]-205.332859911
AllCCS[M+Na-2H]-206.332859911
AllCCS[M+HCOO]-207.632859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
N-Oxide abiraterone sulfateCC12CCC3C(CC=C4CC(CCC34C)OS(O)(=O)=O)C1CC=C2C1=C[N+]([O-])=CC=C15153.3Standard polar33892256
N-Oxide abiraterone sulfateCC12CCC3C(CC=C4CC(CCC34C)OS(O)(=O)=O)C1CC=C2C1=C[N+]([O-])=CC=C13154.9Standard non polar33892256
N-Oxide abiraterone sulfateCC12CCC3C(CC=C4CC(CCC34C)OS(O)(=O)=O)C1CC=C2C1=C[N+]([O-])=CC=C14049.7Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
N-Oxide abiraterone sulfate,1TMS,isomer #1CC12CCC(OS(=O)(=O)O[Si](C)(C)C)CC1=CCC1C2CCC2(C)C(C3=CC=C[N+]([O-])=C3)=CCC123760.5Semi standard non polar33892256
N-Oxide abiraterone sulfate,1TMS,isomer #1CC12CCC(OS(=O)(=O)O[Si](C)(C)C)CC1=CCC1C2CCC2(C)C(C3=CC=C[N+]([O-])=C3)=CCC123575.5Standard non polar33892256
N-Oxide abiraterone sulfate,1TMS,isomer #1CC12CCC(OS(=O)(=O)O[Si](C)(C)C)CC1=CCC1C2CCC2(C)C(C3=CC=C[N+]([O-])=C3)=CCC124488.6Standard polar33892256
N-Oxide abiraterone sulfate,1TBDMS,isomer #1CC12CCC(OS(=O)(=O)O[Si](C)(C)C(C)(C)C)CC1=CCC1C2CCC2(C)C(C3=CC=C[N+]([O-])=C3)=CCC123989.8Semi standard non polar33892256
N-Oxide abiraterone sulfate,1TBDMS,isomer #1CC12CCC(OS(=O)(=O)O[Si](C)(C)C(C)(C)C)CC1=CCC1C2CCC2(C)C(C3=CC=C[N+]([O-])=C3)=CCC123875.8Standard non polar33892256
N-Oxide abiraterone sulfate,1TBDMS,isomer #1CC12CCC(OS(=O)(=O)O[Si](C)(C)C(C)(C)C)CC1=CCC1C2CCC2(C)C(C3=CC=C[N+]([O-])=C3)=CCC124596.7Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - N-Oxide abiraterone sulfate GC-MS (Non-derivatized) - 70eV, Positivesplash10-01c0-0156900000-72f52e2dc5476ea6e4a62017-09-20Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - N-Oxide abiraterone sulfate GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - N-Oxide abiraterone sulfate 10V, Positive-QTOFsplash10-0002-0004900000-c04a17ba420c8223ba382017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - N-Oxide abiraterone sulfate 20V, Positive-QTOFsplash10-0002-0019100000-3482fc7968df8a073df12017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - N-Oxide abiraterone sulfate 40V, Positive-QTOFsplash10-0ab9-0339000000-6d3d9fe0d199770be5842017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - N-Oxide abiraterone sulfate 10V, Negative-QTOFsplash10-0006-0002900000-6ae045ed8caab9d6a9552017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - N-Oxide abiraterone sulfate 20V, Negative-QTOFsplash10-03dj-0009200000-740ecfce3e59bb5488352017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - N-Oxide abiraterone sulfate 40V, Negative-QTOFsplash10-000t-4009000000-5629b159bc0719d537622017-10-06Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
Biospecimen Locations
  • Blood
  • Urine
Tissue Locations
  • Kidney
  • Liver
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodExpected but not QuantifiedNot QuantifiedNot AvailableNot AvailableNormal
      Not Available
details
UrineExpected but not QuantifiedNot QuantifiedNot AvailableNot AvailableNormal
      Not Available
details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound3034827
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.