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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2017-03-21 05:19:51 UTC
Update Date2022-03-07 03:17:53 UTC
HMDB IDHMDB0062350
Secondary Accession Numbers
  • HMDB62350
Metabolite Identification
Common Name3-demethylubiquinol-10
Description3-demethylubiquinol-10 belongs to the class of organic compounds known as polyprenyl quinols. Polyprenyl quinols are compounds containing a polyisoprene chain attached to a quinol(hydroquinone) at the second ring position. 3-demethylubiquinol-10 is an extremely weak basic (essentially neutral) compound (based on its pKa).
Structure
Data?1563866299
Synonyms
ValueSource
2-Decaprenyl-5-hydroxy-6-methoxy-3-methyl-1,4-benzoquinolChEBI
2-Decaprenyl-5-hydroxy-6-methoxy-3-methylhydroquinoneChEBI
Chemical FormulaC58H90O4
Average Molecular Weight851.354
Monoisotopic Molecular Weight850.683911378
IUPAC Name5-[(2E,6E,10E,14E,18E,22E,26E,30E,34E)-3,7,11,15,19,23,27,31,35,39-decamethyltetraconta-2,6,10,14,18,22,26,30,34,38-decaen-1-yl]-3-methoxy-6-methylbenzene-1,2,4-triol
Traditional Name3-demethylubiquinol-10
CAS Registry NumberNot Available
SMILES
[H]\C(CC\C(C)=C(/[H])CC\C(C)=C(/[H])CC\C(C)=C(/[H])CC\C(C)=C(/[H])CC\C(C)=C(/[H])CC\C(C)=C(/[H])CC\C(C)=C(/[H])CC\C(C)=C(/[H])CC1=C(C)C(O)=C(O)C(OC)=C1O)=C(\C)CCC=C(C)C
InChI Identifier
InChI=1S/C58H90O4/c1-43(2)23-14-24-44(3)25-15-26-45(4)27-16-28-46(5)29-17-30-47(6)31-18-32-48(7)33-19-34-49(8)35-20-36-50(9)37-21-38-51(10)39-22-40-52(11)41-42-54-53(12)55(59)57(61)58(62-13)56(54)60/h23,25,27,29,31,33,35,37,39,41,59-61H,14-22,24,26,28,30,32,34,36,38,40,42H2,1-13H3/b44-25+,45-27+,46-29+,47-31+,48-33+,49-35+,50-37+,51-39+,52-41+
InChI KeyVLMQNHNMQVLPQI-AVRCVIBKSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as polyprenyl quinols. Polyprenyl quinols are compounds containing a polyisoprene chain attached to a quinol(hydroquinone) at the second ring position.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassQuinone and hydroquinone lipids
Direct ParentPolyprenyl quinols
Alternative Parents
Substituents
  • Polyterpenoid
  • 2-polyprenyl-6-methoxyphenol
  • Polyprenylbenzoquinol
  • Polyprenylphenol
  • Ubiquinol skeleton
  • Methoxyphenol
  • Hydroxyquinol derivative
  • Anisole
  • Phenoxy compound
  • M-cresol
  • O-cresol
  • Phenol ether
  • Methoxybenzene
  • Phenol
  • Alkyl aryl ether
  • Toluene
  • Monocyclic benzene moiety
  • Benzenoid
  • Ether
  • Polyol
  • Organooxygen compound
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Aromatic homomonocyclic compound
Molecular FrameworkAromatic homomonocyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
Source
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water Solubility0.00028 g/lALOGPS
LogP9.62ALOGPS
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP9.62ALOGPS
logP18.08ChemAxon
logS-6.5ALOGPS
pKa (Strongest Acidic)9.96ChemAxon
pKa (Strongest Basic)-4.8ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area69.92 ŲChemAxon
Rotatable Bond Count30ChemAxon
Refractivity281.97 m³·mol⁻¹ChemAxon
Polarizability111.93 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+311.80330932474
DeepCCS[M-H]-309.93330932474
DeepCCS[M-2H]-343.96530932474
DeepCCS[M+Na]+317.97830932474
AllCCS[M+H]+289.732859911
AllCCS[M+H-H2O]+289.332859911
AllCCS[M+NH4]+290.132859911
AllCCS[M+Na]+290.232859911
AllCCS[M-H]-258.432859911
AllCCS[M+Na-2H]-259.732859911
AllCCS[M+HCOO]-261.232859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
3-demethylubiquinol-10[H]\C(CC\C(C)=C(/[H])CC\C(C)=C(/[H])CC\C(C)=C(/[H])CC\C(C)=C(/[H])CC\C(C)=C(/[H])CC\C(C)=C(/[H])CC\C(C)=C(/[H])CC\C(C)=C(/[H])CC1=C(C)C(O)=C(O)C(OC)=C1O)=C(\C)CCC=C(C)C8676.0Standard polar33892256
3-demethylubiquinol-10[H]\C(CC\C(C)=C(/[H])CC\C(C)=C(/[H])CC\C(C)=C(/[H])CC\C(C)=C(/[H])CC\C(C)=C(/[H])CC\C(C)=C(/[H])CC\C(C)=C(/[H])CC\C(C)=C(/[H])CC1=C(C)C(O)=C(O)C(OC)=C1O)=C(\C)CCC=C(C)C5763.8Standard non polar33892256
3-demethylubiquinol-10[H]\C(CC\C(C)=C(/[H])CC\C(C)=C(/[H])CC\C(C)=C(/[H])CC\C(C)=C(/[H])CC\C(C)=C(/[H])CC\C(C)=C(/[H])CC\C(C)=C(/[H])CC\C(C)=C(/[H])CC1=C(C)C(O)=C(O)C(OC)=C1O)=C(\C)CCC=C(C)C5942.3Semi standard non polar33892256
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-demethylubiquinol-10 10V, Positive-QTOFsplash10-0udi-0312122090-e48259c62f73f39235e32017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-demethylubiquinol-10 20V, Positive-QTOFsplash10-017i-1739377210-dee177c0b780bfd3ec062017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-demethylubiquinol-10 40V, Positive-QTOFsplash10-066s-3469677500-0ef850c3e9eac42328ba2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-demethylubiquinol-10 10V, Negative-QTOFsplash10-0002-0000000090-c642b67a8bd8d2322ebc2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-demethylubiquinol-10 20V, Negative-QTOFsplash10-0002-1000000590-c325bbf9dfbed01db5cc2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-demethylubiquinol-10 40V, Negative-QTOFsplash10-008a-3100000950-361af5e373b4f0f72efd2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-demethylubiquinol-10 10V, Positive-QTOFsplash10-100s-1010021950-b3eeb8d97e92d7aedecc2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-demethylubiquinol-10 20V, Positive-QTOFsplash10-015m-0003222910-fa8ce7fca3409f1490332021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-demethylubiquinol-10 40V, Positive-QTOFsplash10-000b-4119422800-a69c3d620f76e95fd8932021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-demethylubiquinol-10 10V, Negative-QTOFsplash10-0002-0000000090-d4b7e140d6a283082a1f2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-demethylubiquinol-10 20V, Negative-QTOFsplash10-0002-0510001290-2bcbe5e62ca60d0250472021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3-demethylubiquinol-10 40V, Negative-QTOFsplash10-06a0-0910022110-503d751721edf99a76752021-09-24Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDCPD-9873
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound56927876
PDB IDNot Available
ChEBI ID64182
Food Biomarker OntologyNot Available
VMH IDM00770
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.