Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2017-03-23 03:10:47 UTC
Update Date2022-03-07 03:17:55 UTC
HMDB IDHMDB0062521
Secondary Accession Numbers
  • HMDB62521
Metabolite Identification
Common Namepregn-5-ene-3,20-dione
Descriptionpregn-5-ene-3,20-dione is classified as a gluco/mineralocorticoids, progestogin or a Gluco/mineralocorticoids, progestogin derivative. Gluco/mineralocorticoids, progestogins are steroids with a structure based on a hydroxylated prostane moiety. pregn-5-ene-3,20-dione is considered to be practically insoluble (in water) and relatively neutral
Structure
Data?1563866323
Synonyms
ValueSource
5-Pregnene-3,20-dioneChEBI
Chemical FormulaC21H30O2
Average Molecular Weight314.469
Monoisotopic Molecular Weight314.224580206
IUPAC Name(1S,2R,10S,11S,14S,15S)-14-acetyl-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-7-en-5-one
Traditional Name(1S,2R,10S,11S,14S,15S)-14-acetyl-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-7-en-5-one
CAS Registry Number1236-09-5
SMILES
[H][C@@]1(CC[C@@]2([H])[C@]3([H])CC=C4CC(=O)CC[C@]4(C)[C@@]3([H])CC[C@]12C)C(C)=O
InChI Identifier
InChI=1S/C21H30O2/c1-13(22)17-6-7-18-16-5-4-14-12-15(23)8-10-20(14,2)19(16)9-11-21(17,18)3/h4,16-19H,5-12H2,1-3H3/t16-,17+,18-,19-,20-,21+/m0/s1
InChI KeyMNRHZPCIEGLWGK-LEKSSAKUSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as gluco/mineralocorticoids, progestogins and derivatives. These are steroids with a structure based on a hydroxylated prostane moiety.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassSteroids and steroid derivatives
Sub ClassPregnane steroids
Direct ParentGluco/mineralocorticoids, progestogins and derivatives
Alternative Parents
Substituents
  • Progestogin-skeleton
  • 20-oxosteroid
  • Oxosteroid
  • 3-oxosteroid
  • 3-oxo-delta-5-steroid
  • Delta-5-steroid
  • Cyclic ketone
  • Ketone
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Carbonyl group
  • Aliphatic homopolycyclic compound
Molecular FrameworkAliphatic homopolycyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
Source
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water Solubility0.0077 g/lALOGPS
LogP3.89ALOGPS
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP3.89ALOGPS
logP3.79ChemAxon
logS-4.6ALOGPS
pKa (Strongest Acidic)16.23ChemAxon
pKa (Strongest Basic)-7.1ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count2ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area34.14 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity92.73 m³·mol⁻¹ChemAxon
Polarizability37.19 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+177.91131661259
DarkChem[M-H]-174.22931661259
DeepCCS[M-2H]-209.030932474
DeepCCS[M+Na]+183.3730932474
AllCCS[M+H]+180.232859911
AllCCS[M+H-H2O]+177.332859911
AllCCS[M+NH4]+182.832859911
AllCCS[M+Na]+183.632859911
AllCCS[M-H]-186.932859911
AllCCS[M+Na-2H]-187.232859911
AllCCS[M+HCOO]-187.732859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
pregn-5-ene-3,20-dione[H][C@@]1(CC[C@@]2([H])[C@]3([H])CC=C4CC(=O)CC[C@]4(C)[C@@]3([H])CC[C@]12C)C(C)=O2977.2Standard polar33892256
pregn-5-ene-3,20-dione[H][C@@]1(CC[C@@]2([H])[C@]3([H])CC=C4CC(=O)CC[C@]4(C)[C@@]3([H])CC[C@]12C)C(C)=O2664.4Standard non polar33892256
pregn-5-ene-3,20-dione[H][C@@]1(CC[C@@]2([H])[C@]3([H])CC=C4CC(=O)CC[C@]4(C)[C@@]3([H])CC[C@]12C)C(C)=O2797.6Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
pregn-5-ene-3,20-dione,1TMS,isomer #1CC(O[Si](C)(C)C)=C1CC[C@H]2[C@@H]3CC=C4CC(=O)CC[C@]4(C)[C@H]3CC[C@]12C2804.2Semi standard non polar33892256
pregn-5-ene-3,20-dione,1TMS,isomer #1CC(O[Si](C)(C)C)=C1CC[C@H]2[C@@H]3CC=C4CC(=O)CC[C@]4(C)[C@H]3CC[C@]12C2725.8Standard non polar33892256
pregn-5-ene-3,20-dione,1TMS,isomer #1CC(O[Si](C)(C)C)=C1CC[C@H]2[C@@H]3CC=C4CC(=O)CC[C@]4(C)[C@H]3CC[C@]12C3100.7Standard polar33892256
pregn-5-ene-3,20-dione,1TMS,isomer #2CC(=O)[C@H]1CC[C@H]2[C@@H]3CC=C4CC(O[Si](C)(C)C)=CC[C@]4(C)[C@H]3CC[C@]12C2814.5Semi standard non polar33892256
pregn-5-ene-3,20-dione,1TMS,isomer #2CC(=O)[C@H]1CC[C@H]2[C@@H]3CC=C4CC(O[Si](C)(C)C)=CC[C@]4(C)[C@H]3CC[C@]12C2675.2Standard non polar33892256
pregn-5-ene-3,20-dione,1TMS,isomer #2CC(=O)[C@H]1CC[C@H]2[C@@H]3CC=C4CC(O[Si](C)(C)C)=CC[C@]4(C)[C@H]3CC[C@]12C3128.6Standard polar33892256
pregn-5-ene-3,20-dione,1TMS,isomer #3CC(=O)[C@H]1CC[C@H]2[C@@H]3CC=C4C=C(O[Si](C)(C)C)CC[C@]4(C)[C@H]3CC[C@]12C2864.1Semi standard non polar33892256
pregn-5-ene-3,20-dione,1TMS,isomer #3CC(=O)[C@H]1CC[C@H]2[C@@H]3CC=C4C=C(O[Si](C)(C)C)CC[C@]4(C)[C@H]3CC[C@]12C2770.2Standard non polar33892256
pregn-5-ene-3,20-dione,1TMS,isomer #3CC(=O)[C@H]1CC[C@H]2[C@@H]3CC=C4C=C(O[Si](C)(C)C)CC[C@]4(C)[C@H]3CC[C@]12C3157.2Standard polar33892256
pregn-5-ene-3,20-dione,1TMS,isomer #4C=C(O[Si](C)(C)C)[C@H]1CC[C@H]2[C@@H]3CC=C4CC(=O)CC[C@]4(C)[C@H]3CC[C@]12C2809.3Semi standard non polar33892256
pregn-5-ene-3,20-dione,1TMS,isomer #4C=C(O[Si](C)(C)C)[C@H]1CC[C@H]2[C@@H]3CC=C4CC(=O)CC[C@]4(C)[C@H]3CC[C@]12C2720.5Standard non polar33892256
pregn-5-ene-3,20-dione,1TMS,isomer #4C=C(O[Si](C)(C)C)[C@H]1CC[C@H]2[C@@H]3CC=C4CC(=O)CC[C@]4(C)[C@H]3CC[C@]12C3202.5Standard polar33892256
pregn-5-ene-3,20-dione,2TMS,isomer #1CC(O[Si](C)(C)C)=C1CC[C@H]2[C@@H]3CC=C4CC(O[Si](C)(C)C)=CC[C@]4(C)[C@H]3CC[C@]12C2860.6Semi standard non polar33892256
pregn-5-ene-3,20-dione,2TMS,isomer #1CC(O[Si](C)(C)C)=C1CC[C@H]2[C@@H]3CC=C4CC(O[Si](C)(C)C)=CC[C@]4(C)[C@H]3CC[C@]12C2796.6Standard non polar33892256
pregn-5-ene-3,20-dione,2TMS,isomer #1CC(O[Si](C)(C)C)=C1CC[C@H]2[C@@H]3CC=C4CC(O[Si](C)(C)C)=CC[C@]4(C)[C@H]3CC[C@]12C3156.2Standard polar33892256
pregn-5-ene-3,20-dione,2TMS,isomer #2CC(O[Si](C)(C)C)=C1CC[C@H]2[C@@H]3CC=C4C=C(O[Si](C)(C)C)CC[C@]4(C)[C@H]3CC[C@]12C2910.6Semi standard non polar33892256
pregn-5-ene-3,20-dione,2TMS,isomer #2CC(O[Si](C)(C)C)=C1CC[C@H]2[C@@H]3CC=C4C=C(O[Si](C)(C)C)CC[C@]4(C)[C@H]3CC[C@]12C2865.0Standard non polar33892256
pregn-5-ene-3,20-dione,2TMS,isomer #2CC(O[Si](C)(C)C)=C1CC[C@H]2[C@@H]3CC=C4C=C(O[Si](C)(C)C)CC[C@]4(C)[C@H]3CC[C@]12C3199.7Standard polar33892256
pregn-5-ene-3,20-dione,2TMS,isomer #3C=C(O[Si](C)(C)C)[C@H]1CC[C@H]2[C@@H]3CC=C4CC(O[Si](C)(C)C)=CC[C@]4(C)[C@H]3CC[C@]12C2842.7Semi standard non polar33892256
pregn-5-ene-3,20-dione,2TMS,isomer #3C=C(O[Si](C)(C)C)[C@H]1CC[C@H]2[C@@H]3CC=C4CC(O[Si](C)(C)C)=CC[C@]4(C)[C@H]3CC[C@]12C2786.4Standard non polar33892256
pregn-5-ene-3,20-dione,2TMS,isomer #3C=C(O[Si](C)(C)C)[C@H]1CC[C@H]2[C@@H]3CC=C4CC(O[Si](C)(C)C)=CC[C@]4(C)[C@H]3CC[C@]12C3247.5Standard polar33892256
pregn-5-ene-3,20-dione,2TMS,isomer #4C=C(O[Si](C)(C)C)[C@H]1CC[C@H]2[C@@H]3CC=C4C=C(O[Si](C)(C)C)CC[C@]4(C)[C@H]3CC[C@]12C2904.7Semi standard non polar33892256
pregn-5-ene-3,20-dione,2TMS,isomer #4C=C(O[Si](C)(C)C)[C@H]1CC[C@H]2[C@@H]3CC=C4C=C(O[Si](C)(C)C)CC[C@]4(C)[C@H]3CC[C@]12C2848.4Standard non polar33892256
pregn-5-ene-3,20-dione,2TMS,isomer #4C=C(O[Si](C)(C)C)[C@H]1CC[C@H]2[C@@H]3CC=C4C=C(O[Si](C)(C)C)CC[C@]4(C)[C@H]3CC[C@]12C3290.9Standard polar33892256
pregn-5-ene-3,20-dione,1TBDMS,isomer #1CC(O[Si](C)(C)C(C)(C)C)=C1CC[C@H]2[C@@H]3CC=C4CC(=O)CC[C@]4(C)[C@H]3CC[C@]12C3051.5Semi standard non polar33892256
pregn-5-ene-3,20-dione,1TBDMS,isomer #1CC(O[Si](C)(C)C(C)(C)C)=C1CC[C@H]2[C@@H]3CC=C4CC(=O)CC[C@]4(C)[C@H]3CC[C@]12C2983.5Standard non polar33892256
pregn-5-ene-3,20-dione,1TBDMS,isomer #1CC(O[Si](C)(C)C(C)(C)C)=C1CC[C@H]2[C@@H]3CC=C4CC(=O)CC[C@]4(C)[C@H]3CC[C@]12C3255.8Standard polar33892256
pregn-5-ene-3,20-dione,1TBDMS,isomer #2CC(=O)[C@H]1CC[C@H]2[C@@H]3CC=C4CC(O[Si](C)(C)C(C)(C)C)=CC[C@]4(C)[C@H]3CC[C@]12C3051.3Semi standard non polar33892256
pregn-5-ene-3,20-dione,1TBDMS,isomer #2CC(=O)[C@H]1CC[C@H]2[C@@H]3CC=C4CC(O[Si](C)(C)C(C)(C)C)=CC[C@]4(C)[C@H]3CC[C@]12C2878.7Standard non polar33892256
pregn-5-ene-3,20-dione,1TBDMS,isomer #2CC(=O)[C@H]1CC[C@H]2[C@@H]3CC=C4CC(O[Si](C)(C)C(C)(C)C)=CC[C@]4(C)[C@H]3CC[C@]12C3270.0Standard polar33892256
pregn-5-ene-3,20-dione,1TBDMS,isomer #3CC(=O)[C@H]1CC[C@H]2[C@@H]3CC=C4C=C(O[Si](C)(C)C(C)(C)C)CC[C@]4(C)[C@H]3CC[C@]12C3109.0Semi standard non polar33892256
pregn-5-ene-3,20-dione,1TBDMS,isomer #3CC(=O)[C@H]1CC[C@H]2[C@@H]3CC=C4C=C(O[Si](C)(C)C(C)(C)C)CC[C@]4(C)[C@H]3CC[C@]12C2988.4Standard non polar33892256
pregn-5-ene-3,20-dione,1TBDMS,isomer #3CC(=O)[C@H]1CC[C@H]2[C@@H]3CC=C4C=C(O[Si](C)(C)C(C)(C)C)CC[C@]4(C)[C@H]3CC[C@]12C3307.1Standard polar33892256
pregn-5-ene-3,20-dione,1TBDMS,isomer #4C=C(O[Si](C)(C)C(C)(C)C)[C@H]1CC[C@H]2[C@@H]3CC=C4CC(=O)CC[C@]4(C)[C@H]3CC[C@]12C3059.3Semi standard non polar33892256
pregn-5-ene-3,20-dione,1TBDMS,isomer #4C=C(O[Si](C)(C)C(C)(C)C)[C@H]1CC[C@H]2[C@@H]3CC=C4CC(=O)CC[C@]4(C)[C@H]3CC[C@]12C2984.0Standard non polar33892256
pregn-5-ene-3,20-dione,1TBDMS,isomer #4C=C(O[Si](C)(C)C(C)(C)C)[C@H]1CC[C@H]2[C@@H]3CC=C4CC(=O)CC[C@]4(C)[C@H]3CC[C@]12C3341.8Standard polar33892256
pregn-5-ene-3,20-dione,2TBDMS,isomer #1CC(O[Si](C)(C)C(C)(C)C)=C1CC[C@H]2[C@@H]3CC=C4CC(O[Si](C)(C)C(C)(C)C)=CC[C@]4(C)[C@H]3CC[C@]12C3350.0Semi standard non polar33892256
pregn-5-ene-3,20-dione,2TBDMS,isomer #1CC(O[Si](C)(C)C(C)(C)C)=C1CC[C@H]2[C@@H]3CC=C4CC(O[Si](C)(C)C(C)(C)C)=CC[C@]4(C)[C@H]3CC[C@]12C3178.8Standard non polar33892256
pregn-5-ene-3,20-dione,2TBDMS,isomer #1CC(O[Si](C)(C)C(C)(C)C)=C1CC[C@H]2[C@@H]3CC=C4CC(O[Si](C)(C)C(C)(C)C)=CC[C@]4(C)[C@H]3CC[C@]12C3389.9Standard polar33892256
pregn-5-ene-3,20-dione,2TBDMS,isomer #2CC(O[Si](C)(C)C(C)(C)C)=C1CC[C@H]2[C@@H]3CC=C4C=C(O[Si](C)(C)C(C)(C)C)CC[C@]4(C)[C@H]3CC[C@]12C3390.1Semi standard non polar33892256
pregn-5-ene-3,20-dione,2TBDMS,isomer #2CC(O[Si](C)(C)C(C)(C)C)=C1CC[C@H]2[C@@H]3CC=C4C=C(O[Si](C)(C)C(C)(C)C)CC[C@]4(C)[C@H]3CC[C@]12C3293.9Standard non polar33892256
pregn-5-ene-3,20-dione,2TBDMS,isomer #2CC(O[Si](C)(C)C(C)(C)C)=C1CC[C@H]2[C@@H]3CC=C4C=C(O[Si](C)(C)C(C)(C)C)CC[C@]4(C)[C@H]3CC[C@]12C3443.5Standard polar33892256
pregn-5-ene-3,20-dione,2TBDMS,isomer #3C=C(O[Si](C)(C)C(C)(C)C)[C@H]1CC[C@H]2[C@@H]3CC=C4CC(O[Si](C)(C)C(C)(C)C)=CC[C@]4(C)[C@H]3CC[C@]12C3346.8Semi standard non polar33892256
pregn-5-ene-3,20-dione,2TBDMS,isomer #3C=C(O[Si](C)(C)C(C)(C)C)[C@H]1CC[C@H]2[C@@H]3CC=C4CC(O[Si](C)(C)C(C)(C)C)=CC[C@]4(C)[C@H]3CC[C@]12C3162.4Standard non polar33892256
pregn-5-ene-3,20-dione,2TBDMS,isomer #3C=C(O[Si](C)(C)C(C)(C)C)[C@H]1CC[C@H]2[C@@H]3CC=C4CC(O[Si](C)(C)C(C)(C)C)=CC[C@]4(C)[C@H]3CC[C@]12C3454.1Standard polar33892256
pregn-5-ene-3,20-dione,2TBDMS,isomer #4C=C(O[Si](C)(C)C(C)(C)C)[C@H]1CC[C@H]2[C@@H]3CC=C4C=C(O[Si](C)(C)C(C)(C)C)CC[C@]4(C)[C@H]3CC[C@]12C3424.0Semi standard non polar33892256
pregn-5-ene-3,20-dione,2TBDMS,isomer #4C=C(O[Si](C)(C)C(C)(C)C)[C@H]1CC[C@H]2[C@@H]3CC=C4C=C(O[Si](C)(C)C(C)(C)C)CC[C@]4(C)[C@H]3CC[C@]12C3272.5Standard non polar33892256
pregn-5-ene-3,20-dione,2TBDMS,isomer #4C=C(O[Si](C)(C)C(C)(C)C)[C@H]1CC[C@H]2[C@@H]3CC=C4C=C(O[Si](C)(C)C(C)(C)C)CC[C@]4(C)[C@H]3CC[C@]12C3509.4Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - pregn-5-ene-3,20-dione GC-MS (Non-derivatized) - 70eV, Positivesplash10-0006-0290000000-3d84786df3b6d07df0802017-09-20Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - pregn-5-ene-3,20-dione GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - pregn-5-ene-3,20-dione GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - pregn-5-ene-3,20-dione 10V, Positive-QTOFsplash10-014i-0169000000-6b603eeb79925e509bd92017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - pregn-5-ene-3,20-dione 20V, Positive-QTOFsplash10-05tk-0391000000-65d169e33081e25ef83b2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - pregn-5-ene-3,20-dione 40V, Positive-QTOFsplash10-052v-1390000000-dd0b32b79a8ebf4c83082017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - pregn-5-ene-3,20-dione 10V, Negative-QTOFsplash10-03di-0019000000-1ba757fe6b847f19398c2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - pregn-5-ene-3,20-dione 20V, Negative-QTOFsplash10-03di-0039000000-58b97c9890b9d72be7dc2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - pregn-5-ene-3,20-dione 40V, Negative-QTOFsplash10-0002-1090000000-e2565b4dae182413dc352017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - pregn-5-ene-3,20-dione 10V, Negative-QTOFsplash10-03di-0009000000-2514638890974c4f71f32021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - pregn-5-ene-3,20-dione 20V, Negative-QTOFsplash10-03di-0049000000-83f78896ebe5b7d6bf532021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - pregn-5-ene-3,20-dione 40V, Negative-QTOFsplash10-01pk-0093000000-a54ddccc7d82eb94c8542021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - pregn-5-ene-3,20-dione 10V, Positive-QTOFsplash10-014j-0089000000-a8996d2a5e8ea651a6f42021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - pregn-5-ene-3,20-dione 20V, Positive-QTOFsplash10-00os-0390000000-32248a9d9a7f7566f0192021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - pregn-5-ene-3,20-dione 40V, Positive-QTOFsplash10-052f-7920000000-e11e3c4a02e5f73192bb2021-09-24Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound150901
PDB IDNot Available
ChEBI ID63837
Food Biomarker OntologyNot Available
VMH IDM02760
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
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