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Record Information

Version

5.0

Status

Expected but not Quantified

Creation Date

2017-03-23 06:19:43 UTC

Update Date

2022-03-07 03:18:00 UTC

HMDB ID

HMDB0062794

Secondary Accession Numbers

HMDB62794

Metabolite Identification

Common Name

(25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-)

Description

(25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-) belongs to the class of organic compounds known as dihydroxy bile acids, alcohols and derivatives. Dihydroxy bile acids, alcohols and derivatives are compounds containing or derived from a bile acid or alcohol, and which bears exactly two carboxylic acid groups. Based on a literature review a significant number of articles have been published on (25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-).

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

  Mrv1652305171801112D          

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M  END

HMDB0062794
     RDKit          3D
(25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-)
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M  END

  Mrv1652305171801112D          

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M  END
> <DATABASE_ID>
HMDB0062794

> <DATABASE_NAME>
hmdb

> <SMILES>
CC(CCCC(C)C(O)=O)C1CCC2C3CC=C4C(O)C(O)CCC4(C)C3CCC12C

> <INCHI_IDENTIFIER>
InChI=1S/C27H44O4/c1-16(6-5-7-17(2)25(30)31)19-10-11-20-18-8-9-22-24(29)23(28)13-15-27(22,4)21(18)12-14-26(19,20)3/h9,16-21,23-24,28-29H,5-8,10-15H2,1-4H3,(H,30,31)

> <INCHI_KEY>
YKGKKDOYGJEANO-UHFFFAOYSA-N

> <FORMULA>
C27H44O4

> <MOLECULAR_WEIGHT>
432.645

> <EXACT_MASS>
432.323959897

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
75

> <JCHEM_AVERAGE_POLARIZABILITY>
51.46254716368919

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
6-{5,6-dihydroxy-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-7-en-14-yl}-2-methylheptanoic acid

> <ALOGPS_LOGP>
4.66

> <JCHEM_LOGP>
5.129618300666667

> <ALOGPS_LOGS>
-4.94

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
13.500174363456086

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.828920733489688

> <JCHEM_PKA_STRONGEST_BASIC>
-3.1747438366026017

> <JCHEM_POLAR_SURFACE_AREA>
77.76

> <JCHEM_REFRACTIVITY>
123.51529999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
4.92e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
6-{5,6-dihydroxy-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-7-en-14-yl}-2-methylheptanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0062794
     RDKit          3D
(25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-)
 75 78  0  0  0  0  0  0  0  0999 V2000
    6.1721   -0.7753    1.1796 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0088   -0.4050    2.0831 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3738    0.8198    1.5040 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8619    0.6213    0.0953 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2455    1.9164   -0.3858 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7014    1.8182   -1.7808 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8538    1.4607   -2.7228 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5876    0.8730   -1.8816 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0779    0.7691   -3.3521 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2792    0.1154   -3.2537 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4775   -0.0142   -1.7963 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8195   -0.2446   -1.2850 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8461    0.8065   -1.4115 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0822    0.3926   -0.7215 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0848   -0.4008    0.2976 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3734   -0.7756    0.9449 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4490   -0.0942    2.1782 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5121   -2.2467    1.1081 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4283   -2.4841    2.1451 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2563   -2.9742    1.4333 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0387   -2.4904    0.7397 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8695   -0.9795    0.8828 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7469   -0.6782    2.3677 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6442   -0.5015    0.2216 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0999    0.7381    0.8391 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2019    1.2156    0.2198 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2617    1.2128   -1.2528 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2644    2.4752   -1.8939 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0870   -1.5022    2.3542 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8832   -1.4256    2.0706 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5604   -2.6640    2.9442 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8098   -1.4122    0.3437 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5745    0.1482    0.6972 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0008   -1.2516    1.7266 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4998   -0.1483    3.0703 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5340    1.1212    2.1860 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0584    1.6907    1.5004 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6844    0.2835   -0.5859 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1474   -0.2186    0.1172 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5614    2.2883    0.3773 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1018    2.6853   -0.3564 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4201    2.8742   -2.0528 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7007    2.1149   -2.4290 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6056    1.7270   -3.7761 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0838    0.3907   -2.7051 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8364   -0.1656   -1.5730 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8317    0.0969   -3.8367 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0781    1.7453   -3.8382 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0648    0.6096   -3.8253 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1744   -0.9290   -3.6748 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1680   -0.8801   -1.4515 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2152   -1.1777   -1.7251 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5793    1.7775   -0.9400 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0950    1.0013   -2.4851 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0288    0.7751   -1.0907 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2131   -0.3769    0.3465 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9638    0.7357    2.1127 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0102   -2.6586    0.1844 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1741   -1.8120    2.0499 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1329   -3.0737    2.5520 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4127   -4.0461    1.1053 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1485   -2.9342    1.2555 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0041   -2.8238   -0.2946 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7889   -1.1215    2.7043 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7813    0.4012    2.5419 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5351   -1.1730    2.9673 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8166   -1.2665    0.2604 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8464    1.5631    0.9358 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8552    0.4969    1.9167 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2795    2.2915    0.5748 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9860    0.5889    0.6855 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6511    3.1804   -1.0987 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0385    2.2822   -2.6788 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4975    3.0711   -2.4250 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4653   -3.0496    2.6563 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  1  0
 16 18  1  0
 18 19  1  0
 18 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 22 24  1  0
 24 25  1  0
 25 26  1  0
 26 27  1  0
 27 28  1  0
  2 29  1  0
 29 30  2  0
 29 31  1  0
 27  8  1  0
 27 11  1  0
 24 12  1  0
 22 15  1  0
  1 32  1  0
  1 33  1  0
  1 34  1  0
  2 35  1  0
  3 36  1  0
  3 37  1  0
  4 38  1  0
  4 39  1  0
  5 40  1  0
  5 41  1  0
  6 42  1  0
  7 43  1  0
  7 44  1  0
  7 45  1  0
  8 46  1  0
  9 47  1  0
  9 48  1  0
 10 49  1  0
 10 50  1  0
 11 51  1  0
 12 52  1  0
 13 53  1  0
 13 54  1  0
 14 55  1  0
 16 56  1  0
 17 57  1  0
 18 58  1  0
 19 59  1  0
 20 60  1  0
 20 61  1  0
 21 62  1  0
 21 63  1  0
 23 64  1  0
 23 65  1  0
 23 66  1  0
 24 67  1  0
 25 68  1  0
 25 69  1  0
 26 70  1  0
 26 71  1  0
 28 72  1  0
 28 73  1  0
 28 74  1  0
 31 75  1  0
M  END

HEADER    PROTEIN                                 17-MAY-18   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   17-MAY-18         0                                  
HETATM    1  C   UNK     0      14.351  -3.395   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      14.351  -1.855   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      13.017  -4.165   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      11.683  -3.395   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      10.350  -4.165   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       9.016  -3.395   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       9.016  -1.855   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       7.682  -4.165   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       7.521  -5.696   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.015  -6.016   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       5.245  -4.683   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       3.739  -4.363   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.708  -5.507   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       1.202  -5.187   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       0.726  -3.722   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -0.780  -3.402   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      -1.811  -4.546   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0      -1.256  -1.937   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      -2.763  -1.617   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0      -0.226  -0.793   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       1.281  -1.113   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       1.756  -2.578   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       2.787  -1.433   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       3.263  -2.898   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       4.293  -1.754   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       5.800  -2.074   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       6.275  -3.538   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       7.420  -2.508   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      15.684  -4.165   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0      17.018  -3.395   0.000  0.00  0.00           O+0
HETATM   31  O   UNK     0      15.684  -5.705   0.000  0.00  0.00           O+0
CONECT    1    2    3   29                                                  
CONECT    2    1                                                            
CONECT    3    1    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9   27                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   27                                                  
CONECT   12   11   13   24                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16   22                                                  
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23   24   15                                             
CONECT   23   22                                                            
CONECT   24   22   25   12                                                  
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28    8   11                                             
CONECT   28   27                                                            
CONECT   29    1   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29                                                            
MASTER        0    0    0    0    0    0    0    0   31    0   68    0
END

COMPND    HMDB0062794
HETATM    1  C1  UNL     1       6.172  -0.775   1.180  1.00  0.00           C  
HETATM    2  C2  UNL     1       5.009  -0.405   2.083  1.00  0.00           C  
HETATM    3  C3  UNL     1       4.374   0.820   1.504  1.00  0.00           C  
HETATM    4  C4  UNL     1       3.862   0.621   0.095  1.00  0.00           C  
HETATM    5  C5  UNL     1       3.245   1.916  -0.386  1.00  0.00           C  
HETATM    6  C6  UNL     1       2.701   1.818  -1.781  1.00  0.00           C  
HETATM    7  C7  UNL     1       3.854   1.461  -2.723  1.00  0.00           C  
HETATM    8  C8  UNL     1       1.588   0.873  -1.882  1.00  0.00           C  
HETATM    9  C9  UNL     1       1.078   0.769  -3.352  1.00  0.00           C  
HETATM   10  C10 UNL     1      -0.279   0.115  -3.254  1.00  0.00           C  
HETATM   11  C11 UNL     1      -0.477  -0.014  -1.796  1.00  0.00           C  
HETATM   12  C12 UNL     1      -1.819  -0.245  -1.285  1.00  0.00           C  
HETATM   13  C13 UNL     1      -2.846   0.806  -1.411  1.00  0.00           C  
HETATM   14  C14 UNL     1      -4.082   0.393  -0.722  1.00  0.00           C  
HETATM   15  C15 UNL     1      -4.085  -0.401   0.298  1.00  0.00           C  
HETATM   16  C16 UNL     1      -5.373  -0.776   0.945  1.00  0.00           C  
HETATM   17  O1  UNL     1      -5.449  -0.094   2.178  1.00  0.00           O  
HETATM   18  C17 UNL     1      -5.512  -2.247   1.108  1.00  0.00           C  
HETATM   19  O2  UNL     1      -6.428  -2.484   2.145  1.00  0.00           O  
HETATM   20  C18 UNL     1      -4.256  -2.974   1.433  1.00  0.00           C  
HETATM   21  C19 UNL     1      -3.039  -2.490   0.740  1.00  0.00           C  
HETATM   22  C20 UNL     1      -2.869  -0.979   0.883  1.00  0.00           C  
HETATM   23  C21 UNL     1      -2.747  -0.678   2.368  1.00  0.00           C  
HETATM   24  C22 UNL     1      -1.644  -0.502   0.222  1.00  0.00           C  
HETATM   25  C23 UNL     1      -1.100   0.738   0.839  1.00  0.00           C  
HETATM   26  C24 UNL     1       0.202   1.216   0.220  1.00  0.00           C  
HETATM   27  C25 UNL     1       0.262   1.213  -1.253  1.00  0.00           C  
HETATM   28  C26 UNL     1      -0.264   2.475  -1.894  1.00  0.00           C  
HETATM   29  C27 UNL     1       4.087  -1.502   2.354  1.00  0.00           C  
HETATM   30  O3  UNL     1       2.883  -1.426   2.071  1.00  0.00           O  
HETATM   31  O4  UNL     1       4.560  -2.664   2.944  1.00  0.00           O  
HETATM   32  H1  UNL     1       5.810  -1.412   0.344  1.00  0.00           H  
HETATM   33  H2  UNL     1       6.574   0.148   0.697  1.00  0.00           H  
HETATM   34  H3  UNL     1       7.001  -1.252   1.727  1.00  0.00           H  
HETATM   35  H4  UNL     1       5.500  -0.148   3.070  1.00  0.00           H  
HETATM   36  H5  UNL     1       3.534   1.121   2.186  1.00  0.00           H  
HETATM   37  H6  UNL     1       5.058   1.691   1.500  1.00  0.00           H  
HETATM   38  H7  UNL     1       4.684   0.283  -0.586  1.00  0.00           H  
HETATM   39  H8  UNL     1       3.147  -0.219   0.117  1.00  0.00           H  
HETATM   40  H9  UNL     1       2.561   2.288   0.377  1.00  0.00           H  
HETATM   41  H10 UNL     1       4.102   2.685  -0.356  1.00  0.00           H  
HETATM   42  H11 UNL     1       2.420   2.874  -2.053  1.00  0.00           H  
HETATM   43  H12 UNL     1       4.701   2.115  -2.429  1.00  0.00           H  
HETATM   44  H13 UNL     1       3.606   1.727  -3.776  1.00  0.00           H  
HETATM   45  H14 UNL     1       4.084   0.391  -2.705  1.00  0.00           H  
HETATM   46  H15 UNL     1       1.836  -0.166  -1.573  1.00  0.00           H  
HETATM   47  H16 UNL     1       1.832   0.097  -3.837  1.00  0.00           H  
HETATM   48  H17 UNL     1       1.078   1.745  -3.838  1.00  0.00           H  
HETATM   49  H18 UNL     1      -1.065   0.610  -3.825  1.00  0.00           H  
HETATM   50  H19 UNL     1      -0.174  -0.929  -3.675  1.00  0.00           H  
HETATM   51  H20 UNL     1       0.168  -0.880  -1.451  1.00  0.00           H  
HETATM   52  H21 UNL     1      -2.215  -1.178  -1.725  1.00  0.00           H  
HETATM   53  H22 UNL     1      -2.579   1.778  -0.940  1.00  0.00           H  
HETATM   54  H23 UNL     1      -3.095   1.001  -2.485  1.00  0.00           H  
HETATM   55  H24 UNL     1      -5.029   0.775  -1.091  1.00  0.00           H  
HETATM   56  H25 UNL     1      -6.213  -0.377   0.346  1.00  0.00           H  
HETATM   57  H26 UNL     1      -5.964   0.736   2.113  1.00  0.00           H  
HETATM   58  H27 UNL     1      -6.010  -2.659   0.184  1.00  0.00           H  
HETATM   59  H28 UNL     1      -7.174  -1.812   2.050  1.00  0.00           H  
HETATM   60  H29 UNL     1      -4.133  -3.074   2.552  1.00  0.00           H  
HETATM   61  H30 UNL     1      -4.413  -4.046   1.105  1.00  0.00           H  
HETATM   62  H31 UNL     1      -2.149  -2.934   1.256  1.00  0.00           H  
HETATM   63  H32 UNL     1      -3.004  -2.824  -0.295  1.00  0.00           H  
HETATM   64  H33 UNL     1      -1.789  -1.122   2.704  1.00  0.00           H  
HETATM   65  H34 UNL     1      -2.781   0.401   2.542  1.00  0.00           H  
HETATM   66  H35 UNL     1      -3.535  -1.173   2.967  1.00  0.00           H  
HETATM   67  H36 UNL     1      -0.817  -1.266   0.260  1.00  0.00           H  
HETATM   68  H37 UNL     1      -1.846   1.563   0.936  1.00  0.00           H  
HETATM   69  H38 UNL     1      -0.855   0.497   1.917  1.00  0.00           H  
HETATM   70  H39 UNL     1       0.280   2.292   0.575  1.00  0.00           H  
HETATM   71  H40 UNL     1       0.986   0.589   0.685  1.00  0.00           H  
HETATM   72  H41 UNL     1      -0.651   3.180  -1.099  1.00  0.00           H  
HETATM   73  H42 UNL     1      -1.039   2.282  -2.679  1.00  0.00           H  
HETATM   74  H43 UNL     1       0.497   3.071  -2.425  1.00  0.00           H  
HETATM   75  H44 UNL     1       5.465  -3.050   2.656  1.00  0.00           H  
CONECT    1    2   32   33   34
CONECT    2    3   29   35
CONECT    3    4   36   37
CONECT    4    5   38   39
CONECT    5    6   40   41
CONECT    6    7    8   42
CONECT    7   43   44   45
CONECT    8    9   27   46
CONECT    9   10   47   48
CONECT   10   11   49   50
CONECT   11   12   27   51
CONECT   12   13   24   52
CONECT   13   14   53   54
CONECT   14   15   15   55
CONECT   15   16   22
CONECT   16   17   18   56
CONECT   17   57
CONECT   18   19   20   58
CONECT   19   59
CONECT   20   21   60   61
CONECT   21   22   62   63
CONECT   22   23   24
CONECT   23   64   65   66
CONECT   24   25   67
CONECT   25   26   68   69
CONECT   26   27   70   71
CONECT   27   28
CONECT   28   72   73   74
CONECT   29   30   30   31
CONECT   31   75
END

HMDB0062794
     RDKit          3D
(25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-)
 75 78  0  0  0  0  0  0  0  0999 V2000
    6.1721   -0.7753    1.1796 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0088   -0.4050    2.0831 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3738    0.8198    1.5040 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8619    0.6213    0.0953 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2455    1.9164   -0.3858 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7014    1.8182   -1.7808 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8538    1.4607   -2.7228 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5876    0.8730   -1.8816 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0779    0.7691   -3.3521 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2792    0.1154   -3.2537 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4775   -0.0142   -1.7963 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8195   -0.2446   -1.2850 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8461    0.8065   -1.4115 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0822    0.3926   -0.7215 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0848   -0.4008    0.2976 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3734   -0.7756    0.9449 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4490   -0.0942    2.1782 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5121   -2.2467    1.1081 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4283   -2.4841    2.1451 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2563   -2.9742    1.4333 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0387   -2.4904    0.7397 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8695   -0.9795    0.8828 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7469   -0.6782    2.3677 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6442   -0.5015    0.2216 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0999    0.7381    0.8391 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2019    1.2156    0.2198 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2617    1.2128   -1.2528 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2644    2.4752   -1.8939 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0870   -1.5022    2.3542 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8832   -1.4256    2.0706 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5604   -2.6640    2.9442 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8098   -1.4122    0.3437 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5745    0.1482    0.6972 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0008   -1.2516    1.7266 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4998   -0.1483    3.0703 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5340    1.1212    2.1860 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0584    1.6907    1.5004 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6844    0.2835   -0.5859 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1474   -0.2186    0.1172 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5614    2.2883    0.3773 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1018    2.6853   -0.3564 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4201    2.8742   -2.0528 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7007    2.1149   -2.4290 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6056    1.7270   -3.7761 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0838    0.3907   -2.7051 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8364   -0.1656   -1.5730 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8317    0.0969   -3.8367 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0781    1.7453   -3.8382 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0648    0.6096   -3.8253 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1744   -0.9290   -3.6748 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1680   -0.8801   -1.4515 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2152   -1.1777   -1.7251 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5793    1.7775   -0.9400 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0950    1.0013   -2.4851 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0288    0.7751   -1.0907 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2131   -0.3769    0.3465 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9638    0.7357    2.1127 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0102   -2.6586    0.1844 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1741   -1.8120    2.0499 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1329   -3.0737    2.5520 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4127   -4.0461    1.1053 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1485   -2.9342    1.2555 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0041   -2.8238   -0.2946 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7889   -1.1215    2.7043 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7813    0.4012    2.5419 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5351   -1.1730    2.9673 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8166   -1.2665    0.2604 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8464    1.5631    0.9358 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8552    0.4969    1.9167 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2795    2.2915    0.5748 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9860    0.5889    0.6855 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6511    3.1804   -1.0987 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0385    2.2822   -2.6788 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4975    3.0711   -2.4250 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4653   -3.0496    2.6563 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  1  0
 16 18  1  0
 18 19  1  0
 18 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 22 24  1  0
 24 25  1  0
 25 26  1  0
 26 27  1  0
 27 28  1  0
  2 29  1  0
 29 30  2  0
 29 31  1  0
 27  8  1  0
 27 11  1  0
 24 12  1  0
 22 15  1  0
  1 32  1  0
  1 33  1  0
  1 34  1  0
  2 35  1  0
  3 36  1  0
  3 37  1  0
  4 38  1  0
  4 39  1  0
  5 40  1  0
  5 41  1  0
  6 42  1  0
  7 43  1  0
  7 44  1  0
  7 45  1  0
  8 46  1  0
  9 47  1  0
  9 48  1  0
 10 49  1  0
 10 50  1  0
 11 51  1  0
 12 52  1  0
 13 53  1  0
 13 54  1  0
 14 55  1  0
 16 56  1  0
 17 57  1  0
 18 58  1  0
 19 59  1  0
 20 60  1  0
 20 61  1  0
 21 62  1  0
 21 63  1  0
 23 64  1  0
 23 65  1  0
 23 66  1  0
 24 67  1  0
 25 68  1  0
 25 69  1  0
 26 70  1  0
 26 71  1  0
 28 72  1  0
 28 73  1  0
 28 74  1  0
 31 75  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
(25R)-3b,4b-Dihydroxycholest-5-en-26-Oate(1-)	Generator
(25R)-3b,4b-Dihydroxycholest-5-en-26-Oic acid(1-)	Generator
(25R)-3beta,4beta-Dihydroxycholest-5-en-26-Oic acid(1-)	Generator
(25R)-3Β,4β-dihydroxycholest-5-en-26-Oate(1-)	Generator
(25R)-3Β,4β-dihydroxycholest-5-en-26-Oic acid(1-)	Generator
6-{5,6-dihydroxy-2,15-dimethyltetracyclo[8.7.0.0,.0,]heptadec-7-en-14-yl}-2-methylheptanoate	HMDB
(25R)-3b,4b-Dihydroxycholest-5-en-26-Oate	HMDB
(25R)-3b,4b-Dihydroxycholest-5-en-26-Oic acid	HMDB
(25R)-3beta,4beta-Dihydroxycholest-5-en-26-Oate	HMDB
(25R)-3beta,4beta-Dihydroxycholest-5-en-26-Oic acid	HMDB
(25R)-3Β,4β-dihydroxycholest-5-en-26-Oate	HMDB
(25R)-3Β,4β-dihydroxycholest-5-en-26-Oic acid	HMDB

Chemical Formula

C₂₇H₄₄O₄

Average Molecular Weight

432.645

Monoisotopic Molecular Weight

432.323959897

IUPAC Name

6-{5,6-dihydroxy-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-7-en-14-yl}-2-methylheptanoic acid

Traditional Name

6-{5,6-dihydroxy-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-7-en-14-yl}-2-methylheptanoic acid

CAS Registry Number

Not Available

SMILES

CC(CCCC(C)C(O)=O)C1CCC2C3CC=C4C(O)C(O)CCC4(C)C3CCC12C

InChI Identifier

InChI=1S/C27H44O4/c1-16(6-5-7-17(2)25(30)31)19-10-11-20-18-8-9-22-24(29)23(28)13-15-27(22,4)21(18)12-14-26(19,20)3/h9,16-21,23-24,28-29H,5-8,10-15H2,1-4H3,(H,30,31)

InChI Key

YKGKKDOYGJEANO-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as dihydroxy bile acids, alcohols and derivatives. Dihydroxy bile acids, alcohols and derivatives are compounds containing or derived from a bile acid or alcohol, and which bears exactly two carboxylic acid groups.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Bile acids, alcohols and derivatives

Direct Parent

Dihydroxy bile acids, alcohols and derivatives

Alternative Parents

Substituents

Dihydroxy bile acid, alcohol, or derivatives
Steroid acid
3-hydroxy-delta-5-steroid
3-hydroxysteroid
Hydroxysteroid
4-hydroxysteroid
Delta-5-steroid
Medium-chain fatty acid
Hydroxy fatty acid
Fatty acyl
Cyclic alcohol
1,2-diol
Secondary alcohol
Carboxylic acid
Carboxylic acid derivative
Monocarboxylic acid or derivatives
Organic oxygen compound
Hydrocarbon derivative
Carbonyl group
Alcohol
Organic oxide
Organooxygen compound
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Ontology

Not Available

Exogenous (HMDB: HMDB0062794)

Process

Not Available

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	0.0048 g/l	ALOGPS
LogP	5.22	ALOGPS

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	4.66	ALOGPS
logP	5.13	ChemAxon
logS	-4.9	ALOGPS
pKa (Strongest Acidic)	4.83	ChemAxon
pKa (Strongest Basic)	-3.2	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	77.76 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	123.52 m³·mol⁻¹	ChemAxon
Polarizability	51.46 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M-2H]-	239.357	30932474
DeepCCS	[M+Na]+	214.585	30932474
AllCCS	[M+H]+	211.0	32859911
AllCCS	[M+H-H2O]+	209.1	32859911
AllCCS	[M+NH4]+	212.8	32859911
AllCCS	[M+Na]+	213.3	32859911
AllCCS	[M-H]-	206.6	32859911
AllCCS	[M+Na-2H]-	208.7	32859911
AllCCS	[M+HCOO]-	211.1	32859911

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
(25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-)	CC(CCCC(C)C(O)=O)C1CCC2C3CC=C4C(O)C(O)CCC4(C)C3CCC12C	3243.0	Standard polar	33892256
(25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-)	CC(CCCC(C)C(O)=O)C1CCC2C3CC=C4C(O)C(O)CCC4(C)C3CCC12C	3228.8	Standard non polar	33892256
(25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-)	CC(CCCC(C)C(O)=O)C1CCC2C3CC=C4C(O)C(O)CCC4(C)C3CCC12C	3588.3	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
(25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-),1TMS,isomer #1	CC(CCCC(C)C1CCC2C3CC=C4C(O)C(O)CCC4(C)C3CCC12C)C(=O)O[Si](C)(C)C	3647.8	Semi standard non polar	33892256
(25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-),1TMS,isomer #2	CC(CCCC(C)C1CCC2C3CC=C4C(O[Si](C)(C)C)C(O)CCC4(C)C3CCC12C)C(=O)O	3745.0	Semi standard non polar	33892256
(25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-),1TMS,isomer #3	CC(CCCC(C)C1CCC2C3CC=C4C(O)C(O[Si](C)(C)C)CCC4(C)C3CCC12C)C(=O)O	3748.4	Semi standard non polar	33892256
(25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-),2TMS,isomer #1	CC(CCCC(C)C1CCC2C3CC=C4C(O[Si](C)(C)C)C(O)CCC4(C)C3CCC12C)C(=O)O[Si](C)(C)C	3639.0	Semi standard non polar	33892256
(25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-),2TMS,isomer #2	CC(CCCC(C)C1CCC2C3CC=C4C(O)C(O[Si](C)(C)C)CCC4(C)C3CCC12C)C(=O)O[Si](C)(C)C	3663.0	Semi standard non polar	33892256
(25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-),2TMS,isomer #3	CC(CCCC(C)C1CCC2C3CC=C4C(O[Si](C)(C)C)C(O[Si](C)(C)C)CCC4(C)C3CCC12C)C(=O)O	3720.4	Semi standard non polar	33892256
(25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-),3TMS,isomer #1	CC(CCCC(C)C1CCC2C3CC=C4C(O[Si](C)(C)C)C(O[Si](C)(C)C)CCC4(C)C3CCC12C)C(=O)O[Si](C)(C)C	3570.9	Semi standard non polar	33892256
(25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-),1TBDMS,isomer #1	CC(CCCC(C)C1CCC2C3CC=C4C(O)C(O)CCC4(C)C3CCC12C)C(=O)O[Si](C)(C)C(C)(C)C	3894.7	Semi standard non polar	33892256
(25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-),1TBDMS,isomer #2	CC(CCCC(C)C1CCC2C3CC=C4C(O[Si](C)(C)C(C)(C)C)C(O)CCC4(C)C3CCC12C)C(=O)O	3959.7	Semi standard non polar	33892256
(25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-),1TBDMS,isomer #3	CC(CCCC(C)C1CCC2C3CC=C4C(O)C(O[Si](C)(C)C(C)(C)C)CCC4(C)C3CCC12C)C(=O)O	3962.1	Semi standard non polar	33892256
(25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-),2TBDMS,isomer #1	CC(CCCC(C)C1CCC2C3CC=C4C(O[Si](C)(C)C(C)(C)C)C(O)CCC4(C)C3CCC12C)C(=O)O[Si](C)(C)C(C)(C)C	4090.4	Semi standard non polar	33892256
(25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-),2TBDMS,isomer #2	CC(CCCC(C)C1CCC2C3CC=C4C(O)C(O[Si](C)(C)C(C)(C)C)CCC4(C)C3CCC12C)C(=O)O[Si](C)(C)C(C)(C)C	4129.2	Semi standard non polar	33892256
(25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-),2TBDMS,isomer #3	CC(CCCC(C)C1CCC2C3CC=C4C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)CCC4(C)C3CCC12C)C(=O)O	4141.8	Semi standard non polar	33892256
(25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-),3TBDMS,isomer #1	CC(CCCC(C)C1CCC2C3CC=C4C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)CCC4(C)C3CCC12C)C(=O)O[Si](C)(C)C(C)(C)C	4235.9	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - (25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-) GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-) 10V, Positive-QTOF	splash10-0159-0105900000-805c451ce1ab4a4ef617	2019-02-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-) 20V, Positive-QTOF	splash10-014s-1019300000-470673eaa98b59291144	2019-02-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-) 40V, Positive-QTOF	splash10-066r-4149000000-4e0359e5a695422485f9	2019-02-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-) 10V, Negative-QTOF	splash10-001i-0001900000-7be8dc5987852eb36edc	2019-02-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-) 20V, Negative-QTOF	splash10-001r-0007900000-8542a561f561de2582e6	2019-02-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-) 40V, Negative-QTOF	splash10-0600-5009100000-de6077ddd136002c9c50	2019-02-23	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-) 10V, Negative-QTOF	splash10-001i-0000900000-f99193fc2ae16b7de32c	2021-09-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-) 20V, Negative-QTOF	splash10-001r-0005900000-f624107d78c734b502bf	2021-09-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-) 40V, Negative-QTOF	splash10-017i-1009400000-3e2251053c79eda9e8c9	2021-09-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-) 10V, Positive-QTOF	splash10-015a-1119700000-73e755421884d5a68ab4	2021-09-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-) 20V, Positive-QTOF	splash10-05n3-2039100000-dd011d66e897fc4b1d04	2021-09-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - (25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-) 40V, Positive-QTOF	splash10-0btj-5950000000-cd812ed057b5ac519976	2021-09-24	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

134159944

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.

Showing metabocard for (25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-) (HMDB0062794)

MOL for HMDB0062794 ((25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-))

3D MOL for HMDB0062794 ((25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-))

3D SDF for HMDB0062794 ((25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-))

3D-SDF for HMDB0062794 ((25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-))

PDB for HMDB0062794 ((25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-))

3D PDB for HMDB0062794 ((25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-))

SMILES for HMDB0062794 ((25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-))

INCHI for HMDB0062794 ((25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-))

Structure for HMDB0062794 ((25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-))

3D Structure for HMDB0062794 ((25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-))

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra

MS/MS Spectra