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Showing metabocard for PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z)) (HMDB0116753)

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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2017-09-10 20:43:31 UTC
Update Date2022-11-30 19:26:44 UTC
HMDB IDHMDB0116753
Secondary Accession NumbersNone
Metabolite Identification
Common NamePS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z))
DescriptionPS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z)) is a phosphatidylserine. It is a glycerophospholipid in which a phosphorylserine moiety occupies a glycerol substitution site. As is the case with diacylglycerols, phosphatidylserines can have many different combinations of fatty acids of varying lengths and saturation attached to the C-1 and C-2 positions. PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z)), in particular, consists of two 6Z,9Z,12Z-octadecatrienoyl chains at positions C-1 and C-2. Phosphatidylserine or 1,2-diacyl-sn-glycero-3-phospho-L-serine is distributed widely among animals, plants and microorganisms. Phosphatidylserine is an acidic (anionic) phospholipid with three ionizable groups, i.e. the phosphate moiety, the amino group and the carboxyl function. As with other acidic lipids, it exists in nature in salt form, but it has a high propensity to chelate to calcium via the charged oxygen atoms of both the carboxyl and phosphate moieties, modifying the conformation of the polar head group. This interaction may be of considerable relevance to the biological function of phosphatidylserine. While most phospholipids have a saturated fatty acid on C-1 and an unsaturated fatty acid on C-2 of the glycerol backbone, the fatty acid distribution at the C-1 and C-2 positions of glycerol within phospholipids is continually in flux, owing to phospholipid degradation and the continuous phospholipid remodeling that occurs while these molecules are in membranes. Phosphatidylserines typically carry a net charge of -1 at physiological pH. They mostly have palmitic or stearic acid on carbon 1 and a long chain unsaturated fatty acid (e.g. 18:2, 20:4 and 22:6) on carbon 2. PS biosynthesis involves an exchange reaction of serine for ethanolamine in PE.
Structure
Data?1563873754
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0116753 (PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z)))

PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z))
  Mrv1652303302022262D          

 56 55  0  0  1  0            999 V2000
   21.1276   -3.1272    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   18.2288   -4.1996    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.5536   -4.5894    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   16.8784   -4.1996    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.9038   -4.5894    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.2032   -4.5894    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.0267   -5.3690    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   19.5790   -4.1996    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   19.1892   -3.5244    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   19.9688   -4.8747    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   20.2541   -3.8098    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   20.9292   -4.1996    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.6043   -3.8098    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   18.1413   -5.3987    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   22.3005   -3.1966    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.0978   -3.6582    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   22.3005   -2.3518    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   22.1079   -4.4925    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   15.4888   -4.1769    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.4888   -3.4055    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.7747   -4.5900    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.0605   -4.1769    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.3464   -4.5900    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.6322   -4.1769    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.9181   -4.5900    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.0931   -4.5900    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.3789   -4.1769    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6648   -4.5900    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    6.5864   -4.5900    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8723   -4.1769    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1582   -4.5900    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4441   -4.1769    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7299   -4.5900    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0158   -4.1769    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.3122   -5.7815    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.3122   -6.5530    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.5981   -5.3684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.8839   -5.7815    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.1698   -5.3684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.4556   -5.7815    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.7415   -5.3684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.9165   -5.3684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.2023   -5.7815    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.4882   -5.3684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6632   -5.3684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.9491   -5.7815    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    5.9816   -5.3684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2675   -5.7815    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  3  2  1  0  0  0  0
  3  7  1  0  0  0  0
  3 14  1  1  0  0  0
  4  3  1  0  0  0  0
  5  2  1  0  0  0  0
  6  4  1  0  0  0  0
  6 19  1  0  0  0  0
  8  5  1  0  0  0  0
  9  8  2  0  0  0  0
 10  8  1  0  0  0  0
 11  8  1  0  0  0  0
 12 11  1  0  0  0  0
 13 12  1  0  0  0  0
 13 15  1  0  0  0  0
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 13  1  1  6  0  0  0
 15 16  1  0  0  0  0
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 19 20  2  0  0  0  0
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 25 26  2  0  0  0  0
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 36 37  1  0  0  0  0
 38  7  1  0  0  0  0
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 53 54  1  0  0  0  0
 54 55  1  0  0  0  0
 55 56  1  0  0  0  0
M  END
Download

3D MOL for HMDB0116753 (PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z)))

HMDB0116753
     RDKit          3D
PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z))
124123  0  0  0  0  0  0  0  0999 V2000
   11.1525    6.7173    1.8686 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1728    5.8301    0.6277 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0923    4.6760    0.8756 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.1483    3.7877   -0.3187 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7700    3.2005   -0.6899 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.9995    2.3620   -1.8656 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7687    1.0877   -1.9617 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.2147    0.2845   -0.8355 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.9533   -0.3614   -1.1895 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8140   -0.1618   -0.5592 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5863    0.7007    0.5649 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1759    0.2606    1.8628 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9026   -0.8881    2.3318 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9076   -2.1753    1.6672 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5868   -2.8831    1.9114 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3649   -2.2063    1.4668 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2041   -2.0228    0.0040 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9262   -1.3160   -0.3349 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9466   -0.0652   -0.4862 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7150   -1.9623   -0.4910 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5267   -1.2455   -0.8129 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6310   -2.2331   -0.8708 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.4113   -3.3212   -1.8717 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7503   -4.0167   -1.5398 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0776   -5.2834   -2.6151 P   0  0  0  0  0  5  0  0  0  0  0  0
    2.4354   -5.0160   -3.2262 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0434   -5.3939   -3.8513 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1969   -6.7390   -1.7498 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0614   -6.9471   -0.9659 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2503   -8.2525   -0.2283 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4128   -9.3491   -1.1636 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8998   -8.4953    0.6675 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.8226   -1.4991   -1.1858 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8431   -1.4641   -0.2381 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6784   -2.0713    0.8430 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1120   -0.7352   -0.4630 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9662   -0.8513    0.7512 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2886   -0.1711    0.6887 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2100    1.3228    0.4507 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4624    2.0365    1.4739 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9828    2.9796    2.2183 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3764    3.4841    2.1688 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9627    3.2601    3.4940 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.0057    2.5168    3.7090 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.7210    1.8090    2.6340 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.1143    2.3169    2.6366 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.7043    2.9066    1.6416 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.0361    3.1458    0.3573 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.8673    2.3956   -0.6969 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.3047    2.5479   -2.0768 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.2561    3.9949   -2.5197 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.6339    4.6169   -2.5283 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.6068    7.6614    1.6235 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.2193    6.9769    2.0805 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.6760    6.1890    2.7156 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.5039    6.4591   -0.2074 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.1374    5.4340    0.5025 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.8337    4.1119    1.7941 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.1463    5.0388    1.0459 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.8337    2.9299   -0.1237 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.4943    4.3620   -1.1964 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.3020    2.7676    0.1757 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.1201    4.0816   -0.9973 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.4168    2.8471   -2.7896 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.9888    0.5461   -2.9278 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.9744   -0.5926   -0.7647 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.2435    0.8479    0.0832 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.9656   -1.0589   -2.0391 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9416   -0.6902   -0.9955 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5024    1.3847    0.6466 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8007    1.4933    0.2503 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0776    1.1257    2.6198 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6085   -0.9484    3.4261 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6635   -2.8154    2.2423 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1008   -2.2269    0.6061 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6900   -3.9077    1.4125 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5723   -3.1375    3.0121 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3338   -1.2004    1.9828 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4682   -2.7955    1.8164 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0320   -1.5306   -0.4971 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0503   -3.0613   -0.4293 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6522   -0.8787   -1.8585 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3154   -0.4169   -0.1353 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7430   -2.6963    0.1404 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4395   -2.9767   -2.9166 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2666   -4.0387   -1.7493 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5855   -6.2301   -3.8252 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0130   -6.1401   -0.2068 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8697   -7.0138   -1.5626 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1959   -8.2243    0.3749 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3667  -10.2637   -0.6409 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3863   -9.2951   -1.5607 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.8447    0.3052   -0.7331 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
Download

3D SDF for HMDB0116753 (PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z)))

PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z))
  Mrv1652303302022262D          

 56 55  0  0  1  0            999 V2000
   21.1276   -3.1272    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   18.2288   -4.1996    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.5536   -4.5894    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   16.8784   -4.1996    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.9038   -4.5894    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.2032   -4.5894    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.0267   -5.3690    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   19.5790   -4.1996    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   19.1892   -3.5244    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   19.9688   -4.8747    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   20.2541   -3.8098    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   20.9292   -4.1996    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.6043   -3.8098    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   18.1413   -5.3987    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   22.3005   -3.1966    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.0978   -3.6582    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   22.1079   -4.4925    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   15.4888   -4.1769    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   13.3464   -4.5900    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.6322   -4.1769    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   11.0931   -4.5900    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.3789   -4.1769    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6648   -4.5900    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8398   -4.5900    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1256   -4.1769    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4115   -4.5900    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5864   -4.5900    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8723   -4.1769    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    4.4441   -4.1769    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   10.4882   -5.3684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6632   -5.3684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  8  5  1  0  0  0  0
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 13  1  1  6  0  0  0
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 29 30  1  0  0  0  0
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 31 32  2  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 38  7  1  0  0  0  0
 38 39  2  0  0  0  0
 38 40  1  0  0  0  0
 40 41  1  0  0  0  0
 41 42  1  0  0  0  0
 42 43  1  0  0  0  0
 43 44  1  0  0  0  0
 44 45  2  0  0  0  0
 45 46  1  0  0  0  0
 46 47  1  0  0  0  0
 47 48  2  0  0  0  0
 48 49  1  0  0  0  0
 49 50  1  0  0  0  0
 50 51  2  0  0  0  0
 51 52  1  0  0  0  0
 52 53  1  0  0  0  0
 53 54  1  0  0  0  0
 54 55  1  0  0  0  0
 55 56  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0116753

> <DATABASE_NAME>
hmdb

> <SMILES>
[H][C@](N)(COP(O)(=O)OC[C@@]([H])(COC(=O)CCCC\C=C/C\C=C/C\C=C/CCCCC)OC(=O)CCCC\C=C/C\C=C/C\C=C/CCCCC)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C42H70NO10P/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-31-33-40(44)50-35-38(36-51-54(48,49)52-37-39(43)42(46)47)53-41(45)34-32-30-28-26-24-22-20-18-16-14-12-10-8-6-4-2/h11-14,17-20,23-26,38-39H,3-10,15-16,21-22,27-37,43H2,1-2H3,(H,46,47)(H,48,49)/b13-11-,14-12-,19-17-,20-18-,25-23-,26-24-/t38-,39+/m1/s1

> <INCHI_KEY>
MLTFLOPBEDMCBC-WOMOPFCRSA-N

> <FORMULA>
C42H70NO10P

> <MOLECULAR_WEIGHT>
779.993

> <EXACT_MASS>
779.473734456

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
124

> <JCHEM_AVERAGE_POLARIZABILITY>
88.72393673277946

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S)-2-amino-3-({[(2R)-2,3-bis[(6Z,9Z,12Z)-octadeca-6,9,12-trienoyloxy]propoxy](hydroxy)phosphoryl}oxy)propanoic acid

> <ALOGPS_LOGP>
4.63

> <JCHEM_LOGP>
9.100251485565943

> <ALOGPS_LOGS>
-6.87

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
2.178396015655444

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.468033999178743

> <JCHEM_PKA_STRONGEST_BASIC>
9.376604467850063

> <JCHEM_POLAR_SURFACE_AREA>
171.68

> <JCHEM_REFRACTIVITY>
221.93740000000008

> <JCHEM_ROTATABLE_BOND_COUNT>
38

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.06e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S)-2-amino-3-{[(2R)-2,3-bis[(6Z,9Z,12Z)-octadeca-6,9,12-trienoyloxy]propoxy(hydroxy)phosphoryl]oxy}propanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for HMDB0116753 (PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z)))

HMDB0116753
     RDKit          3D
PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z))
124123  0  0  0  0  0  0  0  0999 V2000
   11.1525    6.7173    1.8686 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1728    5.8301    0.6277 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0923    4.6760    0.8756 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.1483    3.7877   -0.3187 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7700    3.2005   -0.6899 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.9995    2.3620   -1.8656 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7687    1.0877   -1.9617 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.2147    0.2845   -0.8355 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.9533   -0.3614   -1.1895 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8140   -0.1618   -0.5592 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5863    0.7007    0.5649 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1759    0.2606    1.8628 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9026   -0.8881    2.3318 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9076   -2.1753    1.6672 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5868   -2.8831    1.9114 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3649   -2.2063    1.4668 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2041   -2.0228    0.0040 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9262   -1.3160   -0.3349 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9466   -0.0652   -0.4862 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7150   -1.9623   -0.4910 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5267   -1.2455   -0.8129 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6310   -2.2331   -0.8708 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.4113   -3.3212   -1.8717 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7503   -4.0167   -1.5398 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0776   -5.2834   -2.6151 P   0  0  0  0  0  5  0  0  0  0  0  0
    2.4354   -5.0160   -3.2262 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0434   -5.3939   -3.8513 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1969   -6.7390   -1.7498 O   0  0  0  0  0  0  0  0  0  0  0  0
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    0.2503   -8.2525   -0.2283 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4128   -9.3491   -1.1636 N   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
Download

PDB for HMDB0116753 (PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z)))

HEADER    PROTEIN                                 30-MAR-20   NONE
TITLE     NULL                                                        
COMPND    MOLECULE: PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z))               
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   30-MAR-20         0                                  
HETATM    1  H   UNK     0      39.438  -5.837   0.000  0.00  0.00           H+0
HETATM    2  C   UNK     0      34.027  -7.839   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      32.767  -8.567   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      31.506  -7.839   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0      35.287  -8.567   0.000  0.00  0.00           O+0
HETATM    6  O   UNK     0      30.246  -8.567   0.000  0.00  0.00           O+0
HETATM    7  O   UNK     0      31.783 -10.022   0.000  0.00  0.00           O+0
HETATM    8  P   UNK     0      36.547  -7.839   0.000  0.00  0.00           P+0
HETATM    9  O   UNK     0      35.820  -6.579   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0      37.275  -9.099   0.000  0.00  0.00           O+0
HETATM   11  O   UNK     0      37.808  -7.112   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0      39.068  -7.839   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      40.328  -7.112   0.000  0.00  0.00           C+0
HETATM   14  H   UNK     0      33.864 -10.078   0.000  0.00  0.00           H+0
HETATM   15  C   UNK     0      41.628  -5.967   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      43.116  -6.829   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0      41.628  -4.390   0.000  0.00  0.00           O+0
HETATM   18  N   UNK     0      41.268  -8.386   0.000  0.00  0.00           N+0
HETATM   19  C   UNK     0      28.912  -7.797   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      28.912  -6.357   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0      27.579  -8.568   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      26.246  -7.797   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      24.913  -8.568   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      23.580  -7.797   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      22.247  -8.568   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      20.707  -8.568   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      19.374  -7.797   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      18.041  -8.568   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      16.501  -8.568   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      15.168  -7.797   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      13.835  -8.568   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      12.295  -8.568   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      10.962  -7.797   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       9.629  -8.568   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       8.296  -7.797   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       6.962  -8.568   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       5.629  -7.797   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      30.449 -10.792   0.000  0.00  0.00           C+0
HETATM   39  O   UNK     0      30.449 -12.232   0.000  0.00  0.00           O+0
HETATM   40  C   UNK     0      29.116 -10.021   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      27.783 -10.792   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0      26.450 -10.021   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0      25.117 -10.792   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      23.784 -10.021   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      22.244 -10.021   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      20.911 -10.792   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      19.578 -10.021   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      18.038 -10.021   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      16.705 -10.792   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      15.372 -10.021   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0      13.832 -10.021   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0      12.499 -10.792   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0      11.166 -10.021   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0       9.833 -10.792   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0       8.500 -10.021   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0       7.167 -10.792   0.000  0.00  0.00           C+0
CONECT    1   13                                                            
CONECT    2    3    5                                                       
CONECT    3    2    7   14    4                                             
CONECT    4    3    6                                                       
CONECT    5    2    8                                                       
CONECT    6    4   19                                                       
CONECT    7    3   38                                                       
CONECT    8    5    9   10   11                                             
CONECT    9    8                                                            
CONECT   10    8                                                            
CONECT   11    8   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   15   18    1                                             
CONECT   14    3                                                            
CONECT   15   13   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15                                                            
CONECT   18   13                                                            
CONECT   19    6   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36                                                            
CONECT   38    7   39   40                                                  
CONECT   39   38                                                            
CONECT   40   38   41                                                       
CONECT   41   40   42                                                       
CONECT   42   41   43                                                       
CONECT   43   42   44                                                       
CONECT   44   43   45                                                       
CONECT   45   44   46                                                       
CONECT   46   45   47                                                       
CONECT   47   46   48                                                       
CONECT   48   47   49                                                       
CONECT   49   48   50                                                       
CONECT   50   49   51                                                       
CONECT   51   50   52                                                       
CONECT   52   51   53                                                       
CONECT   53   52   54                                                       
CONECT   54   53   55                                                       
CONECT   55   54   56                                                       
CONECT   56   55                                                            
MASTER        0    0    0    0    0    0    0    0   56    0  110    0
END
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3D PDB for HMDB0116753 (PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z)))

COMPND    HMDB0116753
HETATM    1  C1  UNL     1      11.152   6.717   1.869  1.00  0.00           C  
HETATM    2  C2  UNL     1      11.173   5.830   0.628  1.00  0.00           C  
HETATM    3  C3  UNL     1      12.092   4.676   0.876  1.00  0.00           C  
HETATM    4  C4  UNL     1      12.148   3.788  -0.319  1.00  0.00           C  
HETATM    5  C5  UNL     1      10.770   3.201  -0.690  1.00  0.00           C  
HETATM    6  C6  UNL     1      10.999   2.362  -1.866  1.00  0.00           C  
HETATM    7  C7  UNL     1      10.769   1.088  -1.962  1.00  0.00           C  
HETATM    8  C8  UNL     1      10.215   0.284  -0.835  1.00  0.00           C  
HETATM    9  C9  UNL     1       8.953  -0.361  -1.190  1.00  0.00           C  
HETATM   10  C10 UNL     1       7.814  -0.162  -0.559  1.00  0.00           C  
HETATM   11  C11 UNL     1       7.586   0.701   0.565  1.00  0.00           C  
HETATM   12  C12 UNL     1       7.176   0.261   1.863  1.00  0.00           C  
HETATM   13  C13 UNL     1       6.903  -0.888   2.332  1.00  0.00           C  
HETATM   14  C14 UNL     1       6.908  -2.175   1.667  1.00  0.00           C  
HETATM   15  C15 UNL     1       5.587  -2.883   1.911  1.00  0.00           C  
HETATM   16  C16 UNL     1       4.365  -2.206   1.467  1.00  0.00           C  
HETATM   17  C17 UNL     1       4.204  -2.023   0.004  1.00  0.00           C  
HETATM   18  C18 UNL     1       2.926  -1.316  -0.335  1.00  0.00           C  
HETATM   19  O1  UNL     1       2.947  -0.065  -0.486  1.00  0.00           O  
HETATM   20  O2  UNL     1       1.715  -1.962  -0.491  1.00  0.00           O  
HETATM   21  C19 UNL     1       0.527  -1.245  -0.813  1.00  0.00           C  
HETATM   22  C20 UNL     1      -0.631  -2.233  -0.871  1.00  0.00           C  
HETATM   23  C21 UNL     1      -0.411  -3.321  -1.872  1.00  0.00           C  
HETATM   24  O3  UNL     1       0.750  -4.017  -1.540  1.00  0.00           O  
HETATM   25  P1  UNL     1       1.078  -5.283  -2.615  1.00  0.00           P  
HETATM   26  O4  UNL     1       2.435  -5.016  -3.226  1.00  0.00           O  
HETATM   27  O5  UNL     1      -0.043  -5.394  -3.851  1.00  0.00           O  
HETATM   28  O6  UNL     1       1.197  -6.739  -1.750  1.00  0.00           O  
HETATM   29  C22 UNL     1       0.061  -6.947  -0.966  1.00  0.00           C  
HETATM   30  C23 UNL     1       0.250  -8.253  -0.228  1.00  0.00           C  
HETATM   31  N1  UNL     1       0.413  -9.349  -1.164  1.00  0.00           N  
HETATM   32  C24 UNL     1      -0.900  -8.495   0.668  1.00  0.00           C  
HETATM   33  O7  UNL     1      -1.195  -7.647   1.545  1.00  0.00           O  
HETATM   34  O8  UNL     1      -1.632  -9.669   0.513  1.00  0.00           O  
HETATM   35  O9  UNL     1      -1.823  -1.499  -1.186  1.00  0.00           O  
HETATM   36  C25 UNL     1      -2.843  -1.464  -0.238  1.00  0.00           C  
HETATM   37  O10 UNL     1      -2.678  -2.071   0.843  1.00  0.00           O  
HETATM   38  C26 UNL     1      -4.112  -0.735  -0.463  1.00  0.00           C  
HETATM   39  C27 UNL     1      -4.966  -0.851   0.751  1.00  0.00           C  
HETATM   40  C28 UNL     1      -6.289  -0.171   0.689  1.00  0.00           C  
HETATM   41  C29 UNL     1      -6.210   1.323   0.451  1.00  0.00           C  
HETATM   42  C30 UNL     1      -5.462   2.037   1.474  1.00  0.00           C  
HETATM   43  C31 UNL     1      -5.983   2.980   2.218  1.00  0.00           C  
HETATM   44  C32 UNL     1      -7.376   3.484   2.169  1.00  0.00           C  
HETATM   45  C33 UNL     1      -7.963   3.260   3.494  1.00  0.00           C  
HETATM   46  C34 UNL     1      -9.006   2.517   3.709  1.00  0.00           C  
HETATM   47  C35 UNL     1      -9.721   1.809   2.634  1.00  0.00           C  
HETATM   48  C36 UNL     1     -11.114   2.317   2.637  1.00  0.00           C  
HETATM   49  C37 UNL     1     -11.704   2.907   1.642  1.00  0.00           C  
HETATM   50  C38 UNL     1     -11.036   3.146   0.357  1.00  0.00           C  
HETATM   51  C39 UNL     1     -11.867   2.396  -0.697  1.00  0.00           C  
HETATM   52  C40 UNL     1     -11.305   2.548  -2.077  1.00  0.00           C  
HETATM   53  C41 UNL     1     -11.256   3.995  -2.520  1.00  0.00           C  
HETATM   54  C42 UNL     1     -12.634   4.617  -2.528  1.00  0.00           C  
HETATM   55  H1  UNL     1      10.607   7.661   1.624  1.00  0.00           H  
HETATM   56  H2  UNL     1      12.219   6.977   2.081  1.00  0.00           H  
HETATM   57  H3  UNL     1      10.676   6.189   2.716  1.00  0.00           H  
HETATM   58  H4  UNL     1      11.504   6.459  -0.207  1.00  0.00           H  
HETATM   59  H5  UNL     1      10.137   5.434   0.502  1.00  0.00           H  
HETATM   60  H6  UNL     1      11.834   4.112   1.794  1.00  0.00           H  
HETATM   61  H7  UNL     1      13.146   5.039   1.046  1.00  0.00           H  
HETATM   62  H8  UNL     1      12.834   2.930  -0.124  1.00  0.00           H  
HETATM   63  H9  UNL     1      12.494   4.362  -1.196  1.00  0.00           H  
HETATM   64  H10 UNL     1      10.302   2.768   0.176  1.00  0.00           H  
HETATM   65  H11 UNL     1      10.120   4.082  -0.997  1.00  0.00           H  
HETATM   66  H12 UNL     1      11.417   2.847  -2.790  1.00  0.00           H  
HETATM   67  H13 UNL     1      10.989   0.546  -2.928  1.00  0.00           H  
HETATM   68  H14 UNL     1      10.974  -0.593  -0.765  1.00  0.00           H  
HETATM   69  H15 UNL     1      10.243   0.848   0.083  1.00  0.00           H  
HETATM   70  H16 UNL     1       8.966  -1.059  -2.039  1.00  0.00           H  
HETATM   71  H17 UNL     1       6.942  -0.690  -0.995  1.00  0.00           H  
HETATM   72  H18 UNL     1       8.502   1.385   0.647  1.00  0.00           H  
HETATM   73  H19 UNL     1       6.801   1.493   0.250  1.00  0.00           H  
HETATM   74  H20 UNL     1       7.078   1.126   2.620  1.00  0.00           H  
HETATM   75  H21 UNL     1       6.608  -0.948   3.426  1.00  0.00           H  
HETATM   76  H22 UNL     1       7.664  -2.815   2.242  1.00  0.00           H  
HETATM   77  H23 UNL     1       7.101  -2.227   0.606  1.00  0.00           H  
HETATM   78  H24 UNL     1       5.690  -3.908   1.412  1.00  0.00           H  
HETATM   79  H25 UNL     1       5.572  -3.137   3.012  1.00  0.00           H  
HETATM   80  H26 UNL     1       4.334  -1.200   1.983  1.00  0.00           H  
HETATM   81  H27 UNL     1       3.468  -2.796   1.816  1.00  0.00           H  
HETATM   82  H28 UNL     1       5.032  -1.531  -0.497  1.00  0.00           H  
HETATM   83  H29 UNL     1       4.050  -3.061  -0.429  1.00  0.00           H  
HETATM   84  H30 UNL     1       0.652  -0.879  -1.859  1.00  0.00           H  
HETATM   85  H31 UNL     1       0.315  -0.417  -0.135  1.00  0.00           H  
HETATM   86  H32 UNL     1      -0.743  -2.696   0.140  1.00  0.00           H  
HETATM   87  H33 UNL     1      -0.439  -2.977  -2.917  1.00  0.00           H  
HETATM   88  H34 UNL     1      -1.267  -4.039  -1.749  1.00  0.00           H  
HETATM   89  H35 UNL     1      -0.585  -6.230  -3.825  1.00  0.00           H  
HETATM   90  H36 UNL     1       0.013  -6.140  -0.207  1.00  0.00           H  
HETATM   91  H37 UNL     1      -0.870  -7.014  -1.563  1.00  0.00           H  
HETATM   92  H38 UNL     1       1.196  -8.224   0.375  1.00  0.00           H  
HETATM   93  H39 UNL     1       0.367 -10.264  -0.641  1.00  0.00           H  
HETATM   94  H40 UNL     1       1.386  -9.295  -1.561  1.00  0.00           H  
HETATM   95  H41 UNL     1      -1.698 -10.102  -0.417  1.00  0.00           H  
HETATM   96  H42 UNL     1      -3.845   0.305  -0.733  1.00  0.00           H  
HETATM   97  H43 UNL     1      -4.683  -1.138  -1.326  1.00  0.00           H  
HETATM   98  H44 UNL     1      -4.429  -0.575   1.688  1.00  0.00           H  
HETATM   99  H45 UNL     1      -5.190  -1.952   0.875  1.00  0.00           H  
HETATM  100  H46 UNL     1      -6.829  -0.390   1.631  1.00  0.00           H  
HETATM  101  H47 UNL     1      -6.920  -0.606  -0.123  1.00  0.00           H  
HETATM  102  H48 UNL     1      -7.240   1.675   0.375  1.00  0.00           H  
HETATM  103  H49 UNL     1      -5.749   1.478  -0.562  1.00  0.00           H  
HETATM  104  H50 UNL     1      -4.393   1.811   1.676  1.00  0.00           H  
HETATM  105  H51 UNL     1      -5.348   3.485   2.984  1.00  0.00           H  
HETATM  106  H52 UNL     1      -7.921   3.139   1.310  1.00  0.00           H  
HETATM  107  H53 UNL     1      -7.276   4.642   2.109  1.00  0.00           H  
HETATM  108  H54 UNL     1      -7.457   3.771   4.335  1.00  0.00           H  
HETATM  109  H55 UNL     1      -9.423   2.371   4.732  1.00  0.00           H  
HETATM  110  H56 UNL     1      -9.242   1.758   1.670  1.00  0.00           H  
HETATM  111  H57 UNL     1      -9.834   0.727   3.031  1.00  0.00           H  
HETATM  112  H58 UNL     1     -11.718   2.189   3.562  1.00  0.00           H  
HETATM  113  H59 UNL     1     -12.756   3.266   1.710  1.00  0.00           H  
HETATM  114  H60 UNL     1     -10.029   2.789   0.246  1.00  0.00           H  
HETATM  115  H61 UNL     1     -11.018   4.238   0.107  1.00  0.00           H  
HETATM  116  H62 UNL     1     -12.892   2.759  -0.574  1.00  0.00           H  
HETATM  117  H63 UNL     1     -11.845   1.340  -0.370  1.00  0.00           H  
HETATM  118  H64 UNL     1     -10.278   2.133  -2.072  1.00  0.00           H  
HETATM  119  H65 UNL     1     -11.930   1.947  -2.764  1.00  0.00           H  
HETATM  120  H66 UNL     1     -10.610   4.567  -1.857  1.00  0.00           H  
HETATM  121  H67 UNL     1     -10.858   4.066  -3.546  1.00  0.00           H  
HETATM  122  H68 UNL     1     -12.812   5.093  -1.548  1.00  0.00           H  
HETATM  123  H69 UNL     1     -12.640   5.416  -3.292  1.00  0.00           H  
HETATM  124  H70 UNL     1     -13.420   3.882  -2.811  1.00  0.00           H  
CONECT    1    2   55   56   57
CONECT    2    3   58   59
CONECT    3    4   60   61
CONECT    4    5   62   63
CONECT    5    6   64   65
CONECT    6    7    7   66
CONECT    7    8   67
CONECT    8    9   68   69
CONECT    9   10   10   70
CONECT   10   11   71
CONECT   11   12   72   73
CONECT   12   13   13   74
CONECT   13   14   75
CONECT   14   15   76   77
CONECT   15   16   78   79
CONECT   16   17   80   81
CONECT   17   18   82   83
CONECT   18   19   19   20
CONECT   20   21
CONECT   21   22   84   85
CONECT   22   23   35   86
CONECT   23   24   87   88
CONECT   24   25
CONECT   25   26   26   27   28
CONECT   27   89
CONECT   28   29
CONECT   29   30   90   91
CONECT   30   31   32   92
CONECT   31   93   94
CONECT   32   33   33   34
CONECT   34   95
CONECT   35   36
CONECT   36   37   37   38
CONECT   38   39   96   97
CONECT   39   40   98   99
CONECT   40   41  100  101
CONECT   41   42  102  103
CONECT   42   43   43  104
CONECT   43   44  105
CONECT   44   45  106  107
CONECT   45   46   46  108
CONECT   46   47  109
CONECT   47   48  110  111
CONECT   48   49   49  112
CONECT   49   50  113
CONECT   50   51  114  115
CONECT   51   52  116  117
CONECT   52   53  118  119
CONECT   53   54  120  121
CONECT   54  122  123  124
END
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SMILES for HMDB0116753 (PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z)))

[H][C@](N)(COP(O)(=O)OC[C@@]([H])(COC(=O)CCCC\C=C/C\C=C/C\C=C/CCCCC)OC(=O)CCCC\C=C/C\C=C/C\C=C/CCCCC)C(O)=O
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INCHI for HMDB0116753 (PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z)))

InChI=1S/C42H70NO10P/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-31-33-40(44)50-35-38(36-51-54(48,49)52-37-39(43)42(46)47)53-41(45)34-32-30-28-26-24-22-20-18-16-14-12-10-8-6-4-2/h11-14,17-20,23-26,38-39H,3-10,15-16,21-22,27-37,43H2,1-2H3,(H,46,47)(H,48,49)/b13-11-,14-12-,19-17-,20-18-,25-23-,26-24-/t38-,39+/m1/s1
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View in JSmolView Stereo Labels
Synonyms
ValueSource
1-gamma-linolenoyl-2-gamma-linolenoyl-sn-glycero-3-phosphoserine SMPDB, HMDB
PS(18:3/18:3) SMPDB, HMDB
PS(18:3n6/18:3n6) SMPDB, HMDB
PS(18:3w6/18:3w6) SMPDB, HMDB
PS(36:6) SMPDB, HMDB
Pser(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z)) SMPDB, HMDB
Pser(18:3/18:3) SMPDB, HMDB
Pser(18:3n6/18:3n6) SMPDB, HMDB
Pser(18:3w6/18:3w6) SMPDB, HMDB
Pser(36:6) SMPDB, HMDB
Phosphatidylserine(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z)) SMPDB, HMDB
Phosphatidylserine(18:3/18:3) SMPDB, HMDB
Phosphatidylserine(18:3n6/18:3n6) SMPDB, HMDB
Phosphatidylserine(18:3w6/18:3w6) SMPDB, HMDB
Phosphatidylserine(36:6)SMPDB, HMDB
PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z))SMPDB
1,2-dig-linolenoyl-rac-glycero-3-phosphoserineLipid Annotator, HMDB
PSer(18:3/18:3)Lipid Annotator
PS(36:6)Lipid Annotator
Phosphatidylserine(18:3/18:3)Lipid Annotator
PS(18:3/18:3)Lipid Annotator
1,2-di(6Z,9Z,12Z-octadecatrienoyl)-rac-glycero-3-phosphoserineLipid Annotator, HMDB
PSer(36:6)Lipid Annotator
Chemical FormulaC42H70NO10P
Average Molecular Weight779.993
Monoisotopic Molecular Weight779.473734456
IUPAC Name(2S)-2-amino-3-({[(2R)-2,3-bis[(6Z,9Z,12Z)-octadeca-6,9,12-trienoyloxy]propoxy](hydroxy)phosphoryl}oxy)propanoic acid
Traditional Name(2S)-2-amino-3-{[(2R)-2,3-bis[(6Z,9Z,12Z)-octadeca-6,9,12-trienoyloxy]propoxy(hydroxy)phosphoryl]oxy}propanoic acid
CAS Registry NumberNot Available
SMILES
[H][C@](N)(COP(O)(=O)OC[C@@]([H])(COC(=O)CCCC\C=C/C\C=C/C\C=C/CCCCC)OC(=O)CCCC\C=C/C\C=C/C\C=C/CCCCC)C(O)=O
InChI Identifier
InChI=1S/C42H70NO10P/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-31-33-40(44)50-35-38(36-51-54(48,49)52-37-39(43)42(46)47)53-41(45)34-32-30-28-26-24-22-20-18-16-14-12-10-8-6-4-2/h11-14,17-20,23-26,38-39H,3-10,15-16,21-22,27-37,43H2,1-2H3,(H,46,47)(H,48,49)/b13-11-,14-12-,19-17-,20-18-,25-23-,26-24-/t38-,39+/m1/s1
InChI KeyMLTFLOPBEDMCBC-WOMOPFCRSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as phosphatidylserines. These are glycerophosphoserines in which two fatty acids are bonded to the glycerol moiety through ester linkages.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassGlycerophospholipids
Sub ClassGlycerophosphoserines
Direct ParentPhosphatidylserines
Alternative Parents
Substituents
  • Diacyl-glycerol-3-phosphoserine
  • Alpha-amino acid
  • Alpha-amino acid or derivatives
  • L-alpha-amino acid
  • Tricarboxylic acid or derivatives
  • Phosphoethanolamine
  • Fatty acid ester
  • Dialkyl phosphate
  • Organic phosphoric acid derivative
  • Phosphoric acid ester
  • Alkyl phosphate
  • Fatty acyl
  • Amino acid
  • Amino acid or derivatives
  • Carboxylic acid ester
  • Carboxylic acid derivative
  • Carboxylic acid
  • Primary aliphatic amine
  • Organopnictogen compound
  • Organic oxygen compound
  • Organic nitrogen compound
  • Amine
  • Carbonyl group
  • Organic oxide
  • Primary amine
  • Hydrocarbon derivative
  • Organonitrogen compound
  • Organooxygen compound
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
Biological locationSource
Process
Naturally occurring process
Role
Biological role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP4.63ALOGPS
logP9.1ChemAxon
logS-6.9ALOGPS
pKa (Strongest Acidic)1.47ChemAxon
pKa (Strongest Basic)9.38ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count7ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area171.68 ŲChemAxon
Rotatable Bond Count38ChemAxon
Refractivity221.94 m³·mol⁻¹ChemAxon
Polarizability88.72 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+297.76531661259
DarkChem[M-H]-286.74531661259
DeepCCS[M+H]+280.81430932474
DeepCCS[M-H]-278.41830932474
DeepCCS[M-2H]-311.52530932474
DeepCCS[M+Na]+286.72630932474
AllCCS[M+H]+284.032859911
AllCCS[M+H-H2O]+284.032859911
AllCCS[M+NH4]+284.132859911
AllCCS[M+Na]+284.132859911
AllCCS[M-H]-270.732859911
AllCCS[M+Na-2H]-277.732859911
AllCCS[M+HCOO]-285.232859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z))[H][C@](N)(COP(O)(=O)OC[C@@]([H])(COC(=O)CCCC\C=C/C\C=C/C\C=C/CCCCC)OC(=O)CCCC\C=C/C\C=C/C\C=C/CCCCC)C(O)=O5670.5Standard polar33892256
PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z))[H][C@](N)(COP(O)(=O)OC[C@@]([H])(COC(=O)CCCC\C=C/C\C=C/C\C=C/CCCCC)OC(=O)CCCC\C=C/C\C=C/C\C=C/CCCCC)C(O)=O4843.5Standard non polar33892256
PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z))[H][C@](N)(COP(O)(=O)OC[C@@]([H])(COC(=O)CCCC\C=C/C\C=C/C\C=C/CCCCC)OC(=O)CCCC\C=C/C\C=C/C\C=C/CCCCC)C(O)=O5498.6Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z)) GC-MS (TMS_1_1) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z)) GC-MS (TMS_1_2) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z)) GC-MS (TMS_1_3) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z)) GC-MS (TBDMS_1_1) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z)) GC-MS (TBDMS_1_2) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z)) GC-MS (TBDMS_1_3) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z)) 10V, Positive-QTOFNot Available2020-06-30Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z)) 20V, Positive-QTOFNot Available2020-06-30Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z)) 40V, Positive-QTOFNot Available2020-06-30Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z)) 10V, Negative-QTOFNot Available2020-06-30Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z)) 20V, Negative-QTOFNot Available2020-06-30Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z)) 40V, Negative-QTOFNot Available2020-06-30Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z)) 10V, Positive-QTOFsplash10-000b-0000099900-d0288ba51489cbc9663c2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z)) 20V, Positive-QTOFsplash10-000e-0900099900-32a2317467e2f69a24ec2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z)) 40V, Positive-QTOFsplash10-000e-0900099900-32a2317467e2f69a24ec2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z)) 10V, Negative-QTOFsplash10-004i-0000000900-2a420f0becb4d11d7af52021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z)) 20V, Negative-QTOFsplash10-004i-0000001900-8129fe0d43038bfcdb782021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z)) 40V, Negative-QTOFsplash10-01tc-0160709600-5c6bee6a3444c00193a32021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z)) 10V, Positive-QTOFsplash10-0uxr-0000010690-ff7aaeecb9466479c0ac2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z)) 20V, Positive-QTOFsplash10-0udi-0000000290-ffbcd8421c2b67da9ed52021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z)) 40V, Positive-QTOFsplash10-0a4i-0090011310-9bfbad8b7a992fe40a722021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z)) 10V, Positive-QTOFsplash10-001i-0000010900-e316dace3257f6a4c0c02021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z)) 20V, Positive-QTOFsplash10-000t-0001091400-b4055f49fd9d80117bab2021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PS(18:3(6Z,9Z,12Z)/18:3(6Z,9Z,12Z)) 40V, Positive-QTOFsplash10-0002-0001091100-83155d9772a970b6d5652021-09-25Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound52925490
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. Divecha N, Irvine RF: Phospholipid signaling. Cell. 1995 Jan 27;80(2):269-78. [PubMed:7834746 ]
  6. van Engeland M, Nieland LJ, Ramaekers FC, Schutte B, Reutelingsperger CP: Annexin V-affinity assay: a review on an apoptosis detection system based on phosphatidylserine exposure. Cytometry. 1998 Jan 1;31(1):1-9. [PubMed:9450519 ]
  7. Vance JE, Tasseva G: Formation and function of phosphatidylserine and phosphatidylethanolamine in mammalian cells. Biochim Biophys Acta. 2013 Mar;1831(3):543-54. doi: 10.1016/j.bbalip.2012.08.016. Epub 2012 Aug 29. [PubMed:22960354 ]
  8. Cevc, Gregor (1993). Phospholipids Handbook. Marcel Dekker.
  9. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.
  10. Jean E. Vance (2008). Thematic Review Series: Glycerolipids. Phosphatidylserine and phosphatidylethanolamine in mammalian cells: two metabolically related aminophospholipids. The Journal of Lipid Research, 49, 1377-1387..