Legend: enzyme field
| Version | 2.5 | ||||||||||||||||||
| Creation Date | 2006-05-22 15:17:44 | ||||||||||||||||||
| Update Date | 2009-05-05 20:59:19 | ||||||||||||||||||
| Accession Number | HMDB02255 | ||||||||||||||||||
| Secondary Accession Numbers | Not Available | ||||||||||||||||||
| Common Name | R-Methylmalonyl-CoA | ||||||||||||||||||
| Description | Methylmalonyl-CoA is an intermediate in the metabolism of Propanoate. It is a substrate for Malonyl-CoA decarboxylase (mitochondrial), Methylmalonyl-CoA mutase (mitochondrial) and Methylmalonyl-CoA epimerase (mitochondrial). | ||||||||||||||||||
| Synonyms | Not Available | ||||||||||||||||||
| Chemical IUPAC Name | (2R)-3-[2-[3-[[(2R)-4-[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-3-phosphonooxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-hydroxyphosphoryl]oxy-2-hydroxy-3,3-dimethylbutanoyl]amino]propanoylamino]ethylsulfanyl]-2-methyl-3-oxopropanoic acid | ||||||||||||||||||
| Chemical Formula | C25H40N7O19P3S | ||||||||||||||||||
| Chemical Structure | |||||||||||||||||||
| Chemical Taxonomy |
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| Average Molecular Weight | 867.607 | ||||||||||||||||||
| Monoisotopic Molecular Weight | 867.131226 | ||||||||||||||||||
| Isomeric SMILES | C[C@H](C(O)=O)C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP(O)(=O)OP(O)(=O)OCC1OC(C(O)C1OP(O)(O)=O)N1C=NC2=C(N)N=CN=C12 | ||||||||||||||||||
| Canonical SMILES | CC(C(O)=O)C(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(O)(=O)OP(O)(=O)OCC1OC(C(O)C1OP(O)(O)=O)N1C=NC2=C(N)N=CN=C12 | ||||||||||||||||||
| KEGG Compound ID | C01213 ![]() |
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| BioCyc ID | METHYL-MALONYL-COA ![]() |
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| BiGG ID | Not Available | ||||||||||||||||||
| Wikipedia Link | Not Available | ||||||||||||||||||
| NuGOwiki Link | HMDB02255 ![]() |
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| Metagene Link | HMDB02255 ![]() |
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| METLIN ID | 6577 ![]() |
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| PubChem Compound | 449534 ![]() |
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| PubChem Substance | 4435 ![]() |
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| ChEBI ID | Not Available | ||||||||||||||||||
| CAS Registry Number | 73173-92-9 | ||||||||||||||||||
| InChI Identifier | InChI=1/C25H40N7O19P3S/c1-12(23(37)38)24(39)55-7-6-27-14(33)4-5-28-21(36)18(35)25(2,3)9-48-54(45,46)51-53(43,44)47-8-13-17(50-52(40,41)42)16(34)22(49-13)32-11-31-15-19(26)29-10-30-20(15)32/h10-13,16-18,22,34-35H,4-9H2,1-3H3,(H,27,33)(H,28,36)(H,37,38)(H,43,44)(H,45,46)(H2,26,29,30)(H2,40,41,42)/t12-,13?,16?,17?,18+,22?/m1/s1 | ||||||||||||||||||
| Synthesis Reference | Not Available | ||||||||||||||||||
| Melting Point (Experimental) | Not Available | ||||||||||||||||||
| Experimental Water Solubility | Not Available Source: PhysProp | ||||||||||||||||||
| Predicted Water Solubility | 3.57 mg/mL [Predicted by ALOGPS] Calculated using ALOGPS | ||||||||||||||||||
| Physiological Charge | -5 | ||||||||||||||||||
| State | Solid | ||||||||||||||||||
| Experimental LogP/Hydrophobicity | Not Available Source: PhysProp | ||||||||||||||||||
| Predicted LogP/Hydrophobicity | -0.60 [Predicted by ALOGPS]; -6.1 [Predicted by PubChem via XLOGP] Calculated using ALOGPS | ||||||||||||||||||
| Material Safety Data Sheet (MSDS) | Not Available | ||||||||||||||||||
| MOL File | Show | ||||||||||||||||||
| SDF File | Show | ||||||||||||||||||
| PDB File | Show | ||||||||||||||||||
| 2D Structure | |||||||||||||||||||
| 3D Structure | |||||||||||||||||||
| Experimental PDB ID | Not Available | ||||||||||||||||||
| Experimental 1H NMR Spectrum | Not Available | ||||||||||||||||||
| Experimental 13C NMR Spectrum | Not Available | ||||||||||||||||||
| Experimental 13C HSQC Spectrum | Not Available | ||||||||||||||||||
| Predicted 1H NMR Spectrum |
Show Image Show Peaklist |
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| Predicted 13C NMR Spectrum |
Show Image Show Peaklist |
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| Mass Spectrum | Not Available | ||||||||||||||||||
| Simplified TOCSY Spectrum | Not Available | ||||||||||||||||||
| BMRB Spectrum | Not Available | ||||||||||||||||||
| Cellular Location | Not Available | ||||||||||||||||||
| Biofluid Location | Not Available | ||||||||||||||||||
| Tissue Location | Not Available | ||||||||||||||||||
| Concentrations (Normal) | Not Available | ||||||||||||||||||
| Concentrations (Abnormal) | Not Available | ||||||||||||||||||
| Associated Disorders | Not Available | ||||||||||||||||||
| OMIM ID | Not Available | ||||||||||||||||||
| Pathways |
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| General References |
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| Metabolic Enzymes |
| Enzyme 1 [top] | |||||||
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| Enzyme 1 ID | 5488 | ||||||
| Enzyme 1 Name | Methylmalonyl-CoA epimerase, mitochondrial precursor | ||||||
| Enzyme 1 Synonyms |
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| Enzyme 1 Gene Name | MCEE | ||||||
| Enzyme 1 Protein Sequence |
>Methylmalonyl-CoA epimerase, mitochondrial precursor
MARVLKAAAANAVGLFSRLQAPIPTVRASSTSQPLDQVTGSVWNLGRLNHVAIAVPDLEK AAAFYKNILGAQVSEAVPLPEHGVSVVFVNLGNTKMELLHPLGRDSPIAGFLQKNKAGGM HHICIEVDNINAAVMDLKKKKIRSLSEEVKIGAHGKPVIFLHPKDCGGVLVELEQA |
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| Enzyme 1 Number of Residues | 176 | ||||||
| Enzyme 1 Molecular Weight | 18749 | ||||||
| Enzyme 1 Theoretical pI | 9.68 | ||||||
| Enzyme 1 GO Classification | Not Available | ||||||
| Enzyme 1 General Function | Amino acid transport and metabolism | ||||||
| Enzyme 1 Specific Function | (R)-methylmalonyl-CoA = (S)-methylmalonyl-CoA | ||||||
| Enzyme 1 Pathways | |||||||
| Enzyme 1 Reactions |
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| Enzyme 1 Pfam Domain Function |
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| Enzyme 1 Signals |
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| Enzyme 1 Transmembrane Regions |
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| Enzyme 1 Essentiality | Not Available | ||||||
| Enzyme 1 GenBank ID Protein | 14010614 ![]() |
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| Enzyme 1 UniProtKB/Swiss-Prot ID | Q96PE7 ![]() |
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| Enzyme 1 UniProtKB/Swiss-Prot Entry Name | MCEE_HUMAN ![]() |
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| Enzyme 1 PDB ID | Not Available | ||||||
| Enzyme 1 Cellular Location | Not Available | ||||||
| Enzyme 1 Gene Sequence |
>531 bp
ATGGCGCGGGTGCTGAAGGCTGCAGCCGCGAATGCCGTAGGGCTTTTTTCCAGACTTCAA GCTCCCATTCCAACAGTAAGAGCTTCTTCCACATCACAGCCCTTGGATCAAGTGACAGGT TCTGTGTGGAACCTGGGTCGACTCAACCATGTAGCCATAGCAGTGCCAGATTTGGAAAAG GCTGCAGCATTTTATAAGAATATTCTGGGGGCCCAGGTAAGTGAAGCGGTCCCTCTTCCT GAACATGGAGTATCTGTTGTTTTTGTCAACCTGGGAAATACCAAGATGGAACTGCTTCAT CCATTGGGACGTGACAGTCCAATTGCAGGTTTTCTGCAGAAAAACAAGGCTGGAGGAATG CATCACATCTGCATCGAGGTGGATAATATTAATGCAGCTGTGATGGATTTGAAAAAAAAG AAGATCCGCAGTCTAAGTGAAGAGGTCAAAATAGGAGCACATGGAAAACCAGTGATTTTT CTCCATCCTAAAGACTGTGGTGGAGTCCTTGTGGAACTGGAGCAAGCTTGA |
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| Enzyme 1 GenBank Gene ID | AF364547 ![]() |
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| Enzyme 1 GeneCard ID | MCEE ![]() |
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| Enzyme 1 GenAtlas ID | MCEE ![]() |
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| Enzyme 1 HGNC ID | HGNC:16732 ![]() |
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| Enzyme 1 Chromosome Location | 2 | ||||||
| Enzyme 1 Locus | 2p13.3 | ||||||
| Enzyme 1 SNPs | SNPJam Report ![]() |
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| Enzyme 1 General References |
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| Enzyme 1 Metabolite References | Not Available | ||||||
| Enzyme 2 [top] | |||||||
| Enzyme 2 ID | 5489 | ||||||
| Enzyme 2 Name | Methylmalonyl-CoA mutase, mitochondrial precursor | ||||||
| Enzyme 2 Synonyms |
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| Enzyme 2 Gene Name | MUT | ||||||
| Enzyme 2 Protein Sequence |
>Methylmalonyl-CoA mutase, mitochondrial precursor
MLRAKNQLFLLSPHYLRQVKESSGSRLIQQRLLHQQQPLHPEWAALAKKQLKGKNPEDLI WHTPEGISIKPLYSKRDTMDLPEELPGVKPFTRGPYPTMYTFRPWTIRQYAGFSTVEESN KFYKDNIKAGQQGLSVAFDLATHRGYDSDNPRVRGDVGMAGVAIDTVEDTKILFDGIPLE KMSVSMTMNGAVIPVLANFIVTGEEQGVPKEKLTGTIQNDILKEFMVRNTYIFPPEPSMK IIADIFEYTAKHMPKFNSISISGYHMQEAGADAILELAYTLADGLEYSRTGLQAGLTIDE FAPRLSFFWGIGMNFYMEIAKMRAGRRLWAHLIEKMFQPKNSKSLLLRAHCQTSGWSLTE QDPYNNIVRTAIEAMAAVFGGTQSLHTNSFDEALGLPTVKSARIARNTQIIIQEESGIPK VADPWGGSYMMECLTNDVYDAALKLINEIEEMGGMAKAVAEGIPKLRIEECAARRQARID SGSEVIVGVNKYQLEKEDAVEVLAIDNTSVRNRQIEKLKKIKSSRDQALAERCLAALTEC AASGDGNILALAVDASRARCTVGEITDALKKVFGEHKANDRMVSGAYRQEFGESKEITSA IKRVHKFMEREGRRPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQ AVDADVHAVGVSTLAAGHKTLVPELIKELNSLGRPDILVMCGGVIPPQDYEFLFEVGVSN VFGPGTRIPKAAVQVLDDIEKCLEKKQQSV |
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| Enzyme 2 Number of Residues | 750 | ||||||
| Enzyme 2 Molecular Weight | 83121 | ||||||
| Enzyme 2 Theoretical pI | 6.92 | ||||||
| Enzyme 2 GO Classification |
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| Enzyme 2 General Function | Lipid transport and metabolism | ||||||
| Enzyme 2 Specific Function | Involved in the degradation of several amino acids, odd- chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. MCM has different functions in other species | ||||||
| Enzyme 2 Pathways | |||||||
| Enzyme 2 Reactions |
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| Enzyme 2 Pfam Domain Function | |||||||
| Enzyme 2 Signals |
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| Enzyme 2 Transmembrane Regions |
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| Enzyme 2 Essentiality | Not Available | ||||||
| Enzyme 2 GenBank ID Protein | 187452 ![]() |
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| Enzyme 2 UniProtKB/Swiss-Prot ID | P22033 ![]() |
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| Enzyme 2 UniProtKB/Swiss-Prot Entry Name | MUTA_HUMAN ![]() |
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| Enzyme 2 PDB ID | Not Available | ||||||
| Enzyme 2 Cellular Location | Not Available | ||||||
| Enzyme 2 Gene Sequence |
>2253 bp
ATGTTAAGAGCTAAGAATCAGCTTTTTTTACTTTCACCTCATTACCTGAGGCAGGTAAAA GAATCATCAGGCTCCAGGCTCATACAGCAACGACTTCTACACCAGCAACAGCCCCTTCAC CCAGAATGGGCTGCCCTGGCTAAAAAGCAGCTGAAAGGCAAAAACCCAGAAGACCTAATA TGGCACACCCCGGAAGGGATCTCTATAAAACCCTTGTATTCCAAGAGAGATACTATGGAC TTACCTGAAGAACTTCCAGGAGTGAAGCCATTCACACGTGGACCATATCCTACCATGTAT ACCTTTAGGCCCTGGACCATCCGCCAGTATGCTGGTTTTAGTACTGTGGAAGAAAGCAAT AAGTTCTATAAGGACAACATTAAGGCTGGTCAGCAGGGATTATCAGTTGCCTTTGATCTG GCGACACATCGTGGCTATGATTCAGACAACCCTCGAGTTCGTGGTGATGTTGGAATGGCT GGAGTTGCTATTGACACTGTGGAAGATACCAAAATTCTTTTTGATGGAATTCCTTTAGAA AAAATGTCAGTTTCCATGACTATGAATGGAGCAGTTATTCCAGTTCTTGCAAATTTTATA GTAACTGGAGAAGAACAAGGTGTACCTAAAGAGAAACTTACTGGTACCATCCAAAATGAT ATACTAAAGGAATTTATGGTTCGAAATACATACATTTTTCCTCCAGAACCATCCATGAAA ATTATTGCTGACATATTTGAATATACAGCAAAGCACATGCCAAAATTTAATTCAATTTCA ATTAGTGGATACCATATGCAGGAAGCAGGGGCTGATGCCATTCTGGAGCTGGCCTATACT TTAGCAGATGGATTGGAGTACTCTAGAACTGGACTCCAGGCTGGCCTGACAATTGATGAA TTTGCACCAAGGTTGTCTTTCTTCTGGGGAATTGGAATGAATTTCTATATGGAAATAGCA AAGATGAGAGCTGGTAGAAGACTCTGGGCTCACTTAATAGAGAAAATGTTTCAGCCTAAA AACTCAAAATCTCTTCTTCTAAGAGCACACTGTCAGACATCTGGATGGTCACTTACTGAG CAGGATCCCTACAATAATATTGTCCGTACTGCAATAGAAGCAATGGCAGCAGTATTTGGA GGGACTCAGTCTTTGCACACAAATTCTTTTGATGAAGCTTTGGGTTTGCCAACTGTGAAA AGTGCTCGAATTGCCAGGAACACACAAATCATCATTCAAGAAGAATCTGGGATTCCCAAA GTGGCTGATCCTTGGGGAGGTTCTTACATGATGGAATGTCTCACAAATGATGTTTATGAT GCTGCTTTAAAGCTCATTAATGAAATTGAAGAAATGGGTGGAATGGCCAAAGCTGTAGCT GAGGGAATACCTAAACTTCGAATTGAAGAATGTGCTGCCCGAAGACAAGCTAGAATAGAT TCTGGTTCTGAAGTAATTGTTGGAGTAAATAAGTACCAGTTGGAAAAAGAAGACGCTGTA GAAGTTCTGGCAATTGATAATACTTCAGTGCGAAACAGGCAGATTGAAAAACTTAAGAAG ATCAAATCCAGCAGGGATCAAGCTTTGGCTGAACATTGTCTTGCTGCACTAACCGAATGT GCTGCTAGCGGAGATGGAAATATCCTGGCTCTTGCAGTGGATGCATCTCGGGCAAGATGT ACAGTGGGAGAAATCACAGATGCCCTGAAAAAGGTATTTGGTGAACATAAAGCGAATGAT CGAATGGTGAGTGGAGCATATCGCCAGGAATTTGGAGAAAGTAAAGAGATAACATCTGCT ATCAAGAGGGTTCATAAATTCATGGAACGTGAAGGTCGCAGACCTCGTCTTCTTGTAGCA AAAATGGGACAAGATGGCCATGACAGAGGAGCAAAAGTTATTGCTACAGGATTTGCTGAT CTTGGTTTTGATGTGGACATAGGCCCTCTTTTCCAGACTCCTCGTGAAGTGGCCCAGCAG GCTGTGGATGCGGATGTGCATGCTGTGGGCGTAAGCACCCTCGCTGCTGGTCATAAAACC CTAGTTCCTGAACTCATCAAAGAACTTAACTCCCTTGGACGGCCAGATATTCTTGTCATG TGTGGAGGGGTGATACCACCTCAGGATTATGAATTTCTGTTTGAAGTTGGTGTTTCCAAT GTATTTGGTCCTGGGACTCGAATTCCAAAGGCTGCCGTTCAGGTGCTTGATGATATTGAG AAGTGTTTGGAAAAGAAGCAGCAATCTGTATAA |
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| Enzyme 2 GenBank Gene ID | M65131 ![]() |
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| Enzyme 2 GeneCard ID | MUT ![]() |
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| Enzyme 2 GenAtlas ID | MUT ![]() |
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| Enzyme 2 HGNC ID | HGNC:7526 ![]() |
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| Enzyme 2 Chromosome Location | 6 | ||||||
| Enzyme 2 Locus | 6p21 | ||||||
| Enzyme 2 SNPs | SNPJam Report ![]() |
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| Enzyme 2 General References |
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| Enzyme 2 Metabolite References | Not Available | ||||||
| Enzyme 3 [top] | |||||||
| Enzyme 3 ID | 8730 | ||||||
| Enzyme 3 Name | Hypothetical protein MCEE | ||||||
| Enzyme 3 Synonyms | Not Available | ||||||
| Enzyme 3 Gene Name | MCEE | ||||||
| Enzyme 3 Protein Sequence |
>Hypothetical protein MCEE
MARVLKAAAANAVGLFSRLQAPIPTVRASSTSQPLDQVTGSVWNLGRLNHVAIAVPDLEK AAAFYKNILGAQVSEAVPLPEHGVSVVFVNLGNTKMELLHPLGRDSPIAGFLQKNKAGGM HHICIEVDNINAAVMDLKKKKIRSLSEEVKIGAHGKPVIFLHPKDCGGVLVELEQA |
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| Enzyme 3 Number of Residues | 176 | ||||||
| Enzyme 3 Molecular Weight | 18749 | ||||||
| Enzyme 3 Theoretical pI | 9.68 | ||||||
| Enzyme 3 GO Classification | Not Available | ||||||
| Enzyme 3 General Function | Amino acid transport and metabolism | ||||||
| Enzyme 3 Specific Function | Not Available | ||||||
| Enzyme 3 Pathways | Not Available | ||||||
| Enzyme 3 Reactions | Not Available | ||||||
| Enzyme 3 Pfam Domain Function |
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| Enzyme 3 Signals | Not Available | ||||||
| Enzyme 3 Transmembrane Regions | Not Available | ||||||
| Enzyme 3 Essentiality | Not Available | ||||||
| Enzyme 3 GenBank ID Protein | 62822199 ![]() |
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| Enzyme 3 UniProtKB/Swiss-Prot ID | Q53TP1 ![]() |
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| Enzyme 3 UniProtKB/Swiss-Prot Entry Name | Q53TP1_HUMAN ![]() |
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| Enzyme 3 PDB ID | Not Available | ||||||
| Enzyme 3 Cellular Location | Not Available | ||||||
| Enzyme 3 Gene Sequence |
>531 bp
ATGGCGCGGGTGCTGAAGGCTGCAGCCGCGAATGCCGTAGGGCTTTTTTCCAGACTTCAA GCTCCCATTCCAACAGTAAGAGCTTCTTCCACATCACAGCCCTTGGATCAAGTGACAGGT TCTGTGTGGAACCTGGGTCGACTCAACCATGTAGCCATAGCAGTGCCAGATTTGGAAAAG GCTGCAGCATTTTATAAGAATATTCTGGGGGCCCAGGTAAGTGAAGCGGTCCCTCTTCCT GAACATGGAGTATCTGTTGTTTTTGTCAACCTGGGAAATACCAAGATGGAACTGCTTCAT CCATTGGGACGTGACAGTCCAATTGCAGGTTTTCTGCAGAAAAACAAGGCTGGAGGAATG CATCACATCTGCATCGAGGTGGATAATATTAATGCAGCTGTGATGGATTTGAAAAAAAAG AAGATCCGCAGTCTAAGTGAAGAGGTCAAAATAGGAGCACATGGAAAACCAGTGATTTTT CTCCATCCTAAAGACTGTGGTGGAGTCCTTGTGGAACTGGAGCAAGCTTGA |
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| Enzyme 3 GenBank Gene ID | AC007881 ![]() |
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| Enzyme 3 GeneCard ID | MCEE ![]() |
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| Enzyme 3 GenAtlas ID | MCEE ![]() |
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| Enzyme 3 HGNC ID | HGNC:16732 ![]() |
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| Enzyme 3 Chromosome Location | 2 | ||||||
| Enzyme 3 Locus | 2p13.3 | ||||||
| Enzyme 3 SNPs | SNPJam Report ![]() |
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| Enzyme 3 General References | Not Available | ||||||
| Enzyme 3 Metabolite References | Not Available | ||||||