Hmdb loader
Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2020-02-04 17:24:10 UTC
Update Date2022-03-07 03:18:20 UTC
HMDB IDHMDB0240624
Secondary Accession NumbersNone
Metabolite Identification
Common Name4-Hydroxychlorothalonil
Description4-Hydroxychlorothalonil (SDS 3701) is a metabolite of the widely used fungicide chlorothalonil which is used to manage fungal diseases affecting agricultural crops around the world (PMID: 31265862 ). 4-Hydroxychlorothalonil was identified as one of forty plasma metabolites that could be used to predict gut microbiome Shannon diversity (PMID: 31477923 ). Shannon diversity is a metric that summarizes both species abundance and evenness, and it has been suggested as a marker for microbiome health.
Structure
Data?1580837297
Synonyms
ValueSource
4-Hydroxy-2,5,6-trichloro-1,3-benzenedicarbonitrileChEBI
4-Hydroxy-2,5,6-trichloroisophthalonitrileChEBI
BravoHMDB
HydroxychlorothalonilHMDB
TetrachloroisophthalonitrileHMDB
ChlorothalonilHMDB
DaconilHMDB
1,3-Dicyano-4-hydroxy-2,5,6-trichlorobenzeneHMDB
2,4,5-Trichloro-6-hydroxy-1,3-benzenedicarbonitrileHMDB
2,4,5-Trichloro-6-hydroxyisophthalonitrileHMDB
2,5,6-Trichloro-4-hydroxy-1,3-benzenedicarbonitrileHMDB
SDS 3701HMDB
4-HydroxychlorothalonilHMDB
Chemical FormulaC8HCl3N2O
Average Molecular Weight247.46
Monoisotopic Molecular Weight245.9154458
IUPAC Name2,4,5-trichloro-6-hydroxybenzene-1,3-dicarbonitrile
Traditional Name2,4,5-trichloro-6-hydroxybenzene-1,3-dicarbonitrile
CAS Registry Number28343-61-5
SMILES
OC1=C(C#N)C(Cl)=C(C#N)C(Cl)=C1Cl
InChI Identifier
InChI=1S/C8HCl3N2O/c9-5-3(1-12)6(10)7(11)8(14)4(5)2-13/h14H
InChI KeyMDQKYGOECVSPIW-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as benzonitriles. These are organic compounds containing a benzene bearing a nitrile substituent.
KingdomOrganic compounds
Super ClassBenzenoids
ClassBenzene and substituted derivatives
Sub ClassBenzonitriles
Direct ParentBenzonitriles
Alternative Parents
Substituents
  • Benzonitrile
  • 3-halophenol
  • 2-halophenol
  • 3-chlorophenol
  • 2-chlorophenol
  • Chlorobenzene
  • Phenol
  • Halobenzene
  • Aryl chloride
  • Aryl halide
  • Carbonitrile
  • Nitrile
  • Organohalogen compound
  • Organochloride
  • Organonitrogen compound
  • Organooxygen compound
  • Hydrocarbon derivative
  • Organopnictogen compound
  • Organic oxygen compound
  • Organic nitrogen compound
  • Aromatic homomonocyclic compound
Molecular FrameworkAromatic homomonocyclic compounds
External DescriptorsNot Available
Ontology
Not AvailableNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP3.24ALOGPS
logP3.19ChemAxon
logS-4ALOGPS
pKa (Strongest Acidic)4.02ChemAxon
pKa (Strongest Basic)-8.9ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area67.81 ŲChemAxon
Rotatable Bond Count0ChemAxon
Refractivity53.9 m³·mol⁻¹ChemAxon
Polarizability20.07 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+143.85430932474
DeepCCS[M-H]-141.45830932474
DeepCCS[M-2H]-175.65930932474
DeepCCS[M+Na]+150.24430932474
AllCCS[M+H]+144.132859911
AllCCS[M+H-H2O]+140.532859911
AllCCS[M+NH4]+147.432859911
AllCCS[M+Na]+148.332859911
AllCCS[M-H]-133.132859911
AllCCS[M+Na-2H]-133.532859911
AllCCS[M+HCOO]-134.032859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
4-HydroxychlorothalonilOC1=C(C#N)C(Cl)=C(C#N)C(Cl)=C1Cl2459.0Standard polar33892256
4-HydroxychlorothalonilOC1=C(C#N)C(Cl)=C(C#N)C(Cl)=C1Cl1774.2Standard non polar33892256
4-HydroxychlorothalonilOC1=C(C#N)C(Cl)=C(C#N)C(Cl)=C1Cl1896.8Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
4-Hydroxychlorothalonil,1TMS,isomer #1C[Si](C)(C)OC1=C(Cl)C(Cl)=C(C#N)C(Cl)=C1C#N2140.5Semi standard non polar33892256
4-Hydroxychlorothalonil,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC1=C(Cl)C(Cl)=C(C#N)C(Cl)=C1C#N2413.7Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 4-Hydroxychlorothalonil GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Experimental LC-MS/MSLC-MS/MS Spectrum - 4-Hydroxychlorothalonil 30V, Negative-QTOFsplash10-0005-0690000000-e57174fcb435b522153e2021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - 4-Hydroxychlorothalonil 40V, Negative-QTOFsplash10-006t-0910000000-da1fc1e4cbd873a7984f2021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - 4-Hydroxychlorothalonil 20V, Negative-QTOFsplash10-0005-0090000000-d3acea495891d52fac592021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - 4-Hydroxychlorothalonil 10V, Negative-QTOFsplash10-0005-0090000000-f0b79620b3018ac5d5312021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - 4-Hydroxychlorothalonil 35V, Negative-QTOFsplash10-0006-0090000000-e7460b6b0d7cdbebbe082021-09-20HMDB team, MONAView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4-Hydroxychlorothalonil 10V, Positive-QTOFsplash10-0002-0090000000-71a79845f08e15d196ab2019-02-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4-Hydroxychlorothalonil 20V, Positive-QTOFsplash10-0002-0190000000-30fad3715d37cb098e112019-02-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4-Hydroxychlorothalonil 40V, Positive-QTOFsplash10-00kb-0290000000-4f8d369f6f61b1ff92572019-02-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4-Hydroxychlorothalonil 10V, Negative-QTOFsplash10-0006-0090000000-7494fe4a4b1cfd2173c02019-02-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4-Hydroxychlorothalonil 20V, Negative-QTOFsplash10-0006-0090000000-7494fe4a4b1cfd2173c02019-02-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4-Hydroxychlorothalonil 40V, Negative-QTOFsplash10-0006-0090000000-76c4b8e78d2679468e9f2019-02-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4-Hydroxychlorothalonil 10V, Negative-QTOFsplash10-0006-0090000000-4f8e2d0965b53b2635d22021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4-Hydroxychlorothalonil 20V, Negative-QTOFsplash10-0006-0090000000-4f8e2d0965b53b2635d22021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4-Hydroxychlorothalonil 40V, Negative-QTOFsplash10-0f8c-9450000000-9b794cd2fc8833a872ab2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4-Hydroxychlorothalonil 10V, Positive-QTOFsplash10-0002-0090000000-d09a9e40793b50f6ed932021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4-Hydroxychlorothalonil 20V, Positive-QTOFsplash10-0002-0090000000-d09a9e40793b50f6ed932021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 4-Hydroxychlorothalonil 40V, Positive-QTOFsplash10-0002-0290000000-28b6a2681a1eea4588532021-09-22Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedAdult (>18 years old)BothNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID31530
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound34217
PDB IDNot Available
ChEBI ID133542
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Wilmanski T, Rappaport N, Earls JC, Magis AT, Manor O, Lovejoy J, Omenn GS, Hood L, Gibbons SM, Price ND: Blood metabolome predicts gut microbiome alpha-diversity in humans. Nat Biotechnol. 2019 Oct;37(10):1217-1228. doi: 10.1038/s41587-019-0233-9. Epub 2019 Sep 2. [PubMed:31477923 ]
  2. Lin H, Zhao S, Fan X, Ma Y, Wu X, Su Y, Hu J: Residue behavior and dietary risk assessment of chlorothalonil and its metabolite SDS-3701 in water spinach to propose maximum residue limit (MRL). Regul Toxicol Pharmacol. 2019 Oct;107:104416. doi: 10.1016/j.yrtph.2019.104416. Epub 2019 Jun 29. [PubMed:31265862 ]