Hmdb loader
Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-10 20:46:30 UTC
Update Date2021-09-26 22:50:37 UTC
HMDB IDHMDB0243523
Secondary Accession NumbersNone
Metabolite Identification
Common Name(-)-Slaframine
DescriptionSlaframine belongs to the class of organic compounds known as indolizidines. These are polycyclic compounds containing an indolizidine, which is a bicyclic heterocycle containing a saturated six-member ring fused to a saturated five-member ring, one of the bridging atoms being nitrogen. Based on a literature review a significant number of articles have been published on Slaframine. This compound has been identified in human blood as reported by (PMID: 31557052 ). (-)-slaframine is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically (-)-Slaframine is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
(1S,6S,8AS)-1-acetoxy-6-aminooctahydroindolizineMeSH, HMDB
Slaframine citrate salt (1:2)MeSH, HMDB
Chemical FormulaC10H18N2O2
Average Molecular Weight198.2621
Monoisotopic Molecular Weight198.13682783
IUPAC Name6-amino-octahydroindolizin-1-yl acetate
Traditional Nameslaframine
CAS Registry NumberNot Available
SMILES
CC(=O)OC1CCN2CC(N)CCC12
InChI Identifier
InChI=1S/C10H18N2O2/c1-7(13)14-10-4-5-12-6-8(11)2-3-9(10)12/h8-10H,2-6,11H2,1H3
InChI KeyYYIUHLPAZILPSG-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as indolizidines. These are polycyclic compounds containing an indolizidine, which is a bicyclic heterocycle containing a saturated six-member ring fused to a saturated five-member ring, one of the bridging atoms being nitrogen.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassIndolizidines
Sub ClassNot Available
Direct ParentIndolizidines
Alternative Parents
Substituents
  • Indolizidine
  • 3-aminopiperidine
  • Piperidine
  • N-alkylpyrrolidine
  • Pyrrolidine
  • Amino acid or derivatives
  • Carboxylic acid ester
  • Tertiary amine
  • Tertiary aliphatic amine
  • Monocarboxylic acid or derivatives
  • Carboxylic acid derivative
  • Azacycle
  • Organic oxide
  • Primary amine
  • Organopnictogen compound
  • Organooxygen compound
  • Organonitrogen compound
  • Primary aliphatic amine
  • Organic oxygen compound
  • Amine
  • Carbonyl group
  • Organic nitrogen compound
  • Hydrocarbon derivative
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
Role
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP-0.07ALOGPS
logP-0.38ChemAxon
logS0.1ALOGPS
pKa (Strongest Basic)9.82ChemAxon
Physiological Charge2ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area55.56 ŲChemAxon
Rotatable Bond Count2ChemAxon
Refractivity52.83 m³·mol⁻¹ChemAxon
Polarizability21.7 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M-2H]-175.53130932474
DeepCCS[M+Na]+151.06830932474
AllCCS[M+H]+146.332859911
AllCCS[M+H-H2O]+142.232859911
AllCCS[M+NH4]+150.132859911
AllCCS[M+Na]+151.232859911
AllCCS[M-H]-149.232859911
AllCCS[M+Na-2H]-149.732859911
AllCCS[M+HCOO]-150.332859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
(-)-SlaframineCC(=O)OC1CCN2CC(N)CCC121625.2Semi standard non polar33892256
(-)-SlaframineCC(=O)OC1CCN2CC(N)CCC121625.2Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
(-)-Slaframine,1TMS,isomer #1CC(=O)OC1CCN2CC(N[Si](C)(C)C)CCC121725.4Semi standard non polar33892256
(-)-Slaframine,1TMS,isomer #1CC(=O)OC1CCN2CC(N[Si](C)(C)C)CCC121702.1Standard non polar33892256
(-)-Slaframine,1TMS,isomer #1CC(=O)OC1CCN2CC(N[Si](C)(C)C)CCC122763.3Standard polar33892256
(-)-Slaframine,2TMS,isomer #1CC(=O)OC1CCN2CC(N([Si](C)(C)C)[Si](C)(C)C)CCC121948.5Semi standard non polar33892256
(-)-Slaframine,2TMS,isomer #1CC(=O)OC1CCN2CC(N([Si](C)(C)C)[Si](C)(C)C)CCC121872.2Standard non polar33892256
(-)-Slaframine,2TMS,isomer #1CC(=O)OC1CCN2CC(N([Si](C)(C)C)[Si](C)(C)C)CCC122610.9Standard polar33892256
(-)-Slaframine,1TBDMS,isomer #1CC(=O)OC1CCN2CC(N[Si](C)(C)C(C)(C)C)CCC121950.0Semi standard non polar33892256
(-)-Slaframine,1TBDMS,isomer #1CC(=O)OC1CCN2CC(N[Si](C)(C)C(C)(C)C)CCC121952.5Standard non polar33892256
(-)-Slaframine,1TBDMS,isomer #1CC(=O)OC1CCN2CC(N[Si](C)(C)C(C)(C)C)CCC122878.8Standard polar33892256
(-)-Slaframine,2TBDMS,isomer #1CC(=O)OC1CCN2CC(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)CCC122321.7Semi standard non polar33892256
(-)-Slaframine,2TBDMS,isomer #1CC(=O)OC1CCN2CC(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)CCC122336.5Standard non polar33892256
(-)-Slaframine,2TBDMS,isomer #1CC(=O)OC1CCN2CC(N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)CCC122710.1Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - (-)-Slaframine GC-MS (Non-derivatized) - 70eV, Positivesplash10-03dl-7900000000-82f2ebd8b74ca296ae062021-09-23Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (-)-Slaframine GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (-)-Slaframine GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (-)-Slaframine 10V, Positive-QTOFsplash10-0532-0900000000-e31134aa571d68f629492016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (-)-Slaframine 20V, Positive-QTOFsplash10-00ei-0900000000-0aa0e3ad7c69dbd764af2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (-)-Slaframine 40V, Positive-QTOFsplash10-0006-9300000000-14ded616dbe500acc3d02016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (-)-Slaframine 10V, Negative-QTOFsplash10-0002-0900000000-17ca17bff4342baf2ea42016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (-)-Slaframine 20V, Negative-QTOFsplash10-0a4j-1900000000-9bb2c6c50e2aaf1c5ddd2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (-)-Slaframine 40V, Negative-QTOFsplash10-052f-9600000000-46d6f441fe573e2436882016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (-)-Slaframine 10V, Positive-QTOFsplash10-0002-0900000000-5141251c4241c3b70bb32021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (-)-Slaframine 20V, Positive-QTOFsplash10-000b-0900000000-f677d3548283e11f73542021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (-)-Slaframine 40V, Positive-QTOFsplash10-008d-9400000000-35f0355727c4637e8ea22021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (-)-Slaframine 10V, Negative-QTOFsplash10-0a4j-6900000000-6538746085fac967dfb32021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (-)-Slaframine 20V, Negative-QTOFsplash10-0a4i-6900000000-9ddfe2dcf6691f0632eb2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (-)-Slaframine 40V, Negative-QTOFsplash10-0a4l-9200000000-1e576b18d69f4123a41b2021-10-12Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-10-12Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-10-12Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-10-12Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-10-12Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-10-12Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-10-12Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-10-12Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-10-12Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-10-12Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-10-12Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-10-12Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-10-12Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-10-12Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-10-12Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-10-12Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-10-12Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-10-12Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-10-12Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-10-12Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-10-12Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDC00002073
Chemspider ID7969969
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkSlaframine
METLIN IDNot Available
PubChem Compound9794202
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]