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Showing metabocard for 2,4-Decadienal (HMDB0243576)

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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-10 20:49:39 UTC
Update Date2021-09-26 22:50:42 UTC
HMDB IDHMDB0243576
Secondary Accession NumbersNone
Metabolite Identification
Common Name2,4-Decadienal
Description This compound has been identified in human blood as reported by (PMID: 31557052 ). 2,4-decadienal is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically 2,4-Decadienal is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
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MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0243576 (2,4-Decadienal)

  Mrv0541 04121518182D          

 11 10  0  0  0  0            999 V2000
   -0.1914    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5230    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9520    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6664    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3809    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0954    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8099    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5243    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2388    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2388    1.9520    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  6  5  1  4  0  0  0
  6  7  2  0  0  0  0
  8  7  1  4  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
M  END
Download

3D MOL for HMDB0243576 (2,4-Decadienal)

HMDB0243576
     RDKit          3D
2,4-Decadienal
 27 26  0  0  0  0  0  0  0  0999 V2000
   -4.6619    0.2936    0.1440 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2366    0.1273   -0.3923 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4638   -0.8362    0.4757 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0524   -1.0662    0.0125 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2905    0.2185    0.0125 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1185    0.0451   -0.4290 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1086    0.3646    0.3803 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5133    0.2097   -0.0143 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5001    0.5302    0.7977 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8656    0.3625    0.3707 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8067    0.6635    1.1331 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6446    0.2784    1.2658 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0681    1.2724   -0.1523 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2982   -0.5516   -0.1750 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3046   -0.2287   -1.4206 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7813    1.1427   -0.3568 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0214   -1.8000    0.6028 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4795   -0.3795    1.5093 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5874   -1.8069    0.7135 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1224   -1.5306   -0.9985 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8186    0.9182   -0.7031 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3084    0.6477    1.0298 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2757   -0.3471   -1.4240 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8452    0.7515    1.3623 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7043   -0.1784   -0.9989 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3140    0.9237    1.7962 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0877   -0.0246   -0.6116 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  3
  7  8  1  0
  8  9  2  3
  9 10  1  0
 10 11  2  0
  1 12  1  0
  1 13  1  0
  1 14  1  0
  2 15  1  0
  2 16  1  0
  3 17  1  0
  3 18  1  0
  4 19  1  0
  4 20  1  0
  5 21  1  0
  5 22  1  0
  6 23  1  0
  7 24  1  0
  8 25  1  0
  9 26  1  0
 10 27  1  0
M  END
Download

3D SDF for HMDB0243576 (2,4-Decadienal)

  Mrv0541 04121518182D          

 11 10  0  0  0  0            999 V2000
   -0.1914    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5230    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9520    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6664    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3809    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0954    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8099    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5243    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2388    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2388    1.9520    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  6  5  1  4  0  0  0
  6  7  2  0  0  0  0
  8  7  1  4  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0243576

> <DATABASE_NAME>
hmdb

> <SMILES>
CCCCCC=CC=CC=O

> <INCHI_IDENTIFIER>
InChI=1S/C10H16O/c1-2-3-4-5-6-7-8-9-10-11/h6-10H,2-5H2,1H3

> <INCHI_KEY>
JZQKTMZYLHNFPL-UHFFFAOYSA-N

> <FORMULA>
C10H16O

> <MOLECULAR_WEIGHT>
152.237

> <EXACT_MASS>
152.120115135

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
27

> <JCHEM_AVERAGE_POLARIZABILITY>
19.176089859452937

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
deca-2,4-dienal

> <ALOGPS_LOGP>
3.81

> <JCHEM_LOGP>
3.0664563683333332

> <ALOGPS_LOGS>
-3.61

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-4.136441134641078

> <JCHEM_POLAR_SURFACE_AREA>
17.07

> <JCHEM_REFRACTIVITY>
50.7621

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.76e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
deca-2,4-dienal

> <JCHEM_VEBER_RULE>
1

$$$$
Download

3D-SDF for HMDB0243576 (2,4-Decadienal)

HMDB0243576
     RDKit          3D
2,4-Decadienal
 27 26  0  0  0  0  0  0  0  0999 V2000
   -4.6619    0.2936    0.1440 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2366    0.1273   -0.3923 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4638   -0.8362    0.4757 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0524   -1.0662    0.0125 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2905    0.2185    0.0125 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1185    0.0451   -0.4290 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1086    0.3646    0.3803 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5133    0.2097   -0.0143 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5001    0.5302    0.7977 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8656    0.3625    0.3707 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8067    0.6635    1.1331 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6446    0.2784    1.2658 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0681    1.2724   -0.1523 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2982   -0.5516   -0.1750 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3046   -0.2287   -1.4206 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7813    1.1427   -0.3568 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0214   -1.8000    0.6028 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4795   -0.3795    1.5093 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5874   -1.8069    0.7135 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1224   -1.5306   -0.9985 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8186    0.9182   -0.7031 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3084    0.6477    1.0298 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2757   -0.3471   -1.4240 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8452    0.7515    1.3623 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7043   -0.1784   -0.9989 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3140    0.9237    1.7962 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0877   -0.0246   -0.6116 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  3
  7  8  1  0
  8  9  2  3
  9 10  1  0
 10 11  2  0
  1 12  1  0
  1 13  1  0
  1 14  1  0
  2 15  1  0
  2 16  1  0
  3 17  1  0
  3 18  1  0
  4 19  1  0
  4 20  1  0
  5 21  1  0
  5 22  1  0
  6 23  1  0
  7 24  1  0
  8 25  1  0
  9 26  1  0
 10 27  1  0
M  END
Download

PDB for HMDB0243576 (2,4-Decadienal)

HEADER    PROTEIN                                 12-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   12-APR-15         0                                  
HETATM    1  C   UNK     0      -0.357   1.334   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.976   2.104   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.310   1.334   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.644   2.104   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.977   1.334   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.311   2.104   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       7.645   1.334   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       8.978   2.104   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      10.312   1.334   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      11.646   2.104   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      11.646   3.644   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10                                                            
MASTER        0    0    0    0    0    0    0    0   11    0   20    0
END
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3D PDB for HMDB0243576 (2,4-Decadienal)

COMPND    HMDB0243576
HETATM    1  C1  UNL     1      -4.662   0.294   0.144  1.00  0.00           C  
HETATM    2  C2  UNL     1      -3.237   0.127  -0.392  1.00  0.00           C  
HETATM    3  C3  UNL     1      -2.464  -0.836   0.476  1.00  0.00           C  
HETATM    4  C4  UNL     1      -1.052  -1.066   0.013  1.00  0.00           C  
HETATM    5  C5  UNL     1      -0.290   0.218   0.013  1.00  0.00           C  
HETATM    6  C6  UNL     1       1.118   0.045  -0.429  1.00  0.00           C  
HETATM    7  C7  UNL     1       2.109   0.365   0.380  1.00  0.00           C  
HETATM    8  C8  UNL     1       3.513   0.210  -0.014  1.00  0.00           C  
HETATM    9  C9  UNL     1       4.500   0.530   0.798  1.00  0.00           C  
HETATM   10  C10 UNL     1       5.866   0.363   0.371  1.00  0.00           C  
HETATM   11  O1  UNL     1       6.807   0.663   1.133  1.00  0.00           O  
HETATM   12  H1  UNL     1      -4.645   0.278   1.266  1.00  0.00           H  
HETATM   13  H2  UNL     1      -5.068   1.272  -0.152  1.00  0.00           H  
HETATM   14  H3  UNL     1      -5.298  -0.552  -0.175  1.00  0.00           H  
HETATM   15  H4  UNL     1      -3.305  -0.229  -1.421  1.00  0.00           H  
HETATM   16  H5  UNL     1      -2.781   1.143  -0.357  1.00  0.00           H  
HETATM   17  H6  UNL     1      -3.021  -1.800   0.603  1.00  0.00           H  
HETATM   18  H7  UNL     1      -2.479  -0.379   1.509  1.00  0.00           H  
HETATM   19  H8  UNL     1      -0.587  -1.807   0.714  1.00  0.00           H  
HETATM   20  H9  UNL     1      -1.122  -1.531  -0.998  1.00  0.00           H  
HETATM   21  H10 UNL     1      -0.819   0.918  -0.703  1.00  0.00           H  
HETATM   22  H11 UNL     1      -0.308   0.648   1.030  1.00  0.00           H  
HETATM   23  H12 UNL     1       1.276  -0.347  -1.424  1.00  0.00           H  
HETATM   24  H13 UNL     1       1.845   0.752   1.362  1.00  0.00           H  
HETATM   25  H14 UNL     1       3.704  -0.178  -0.999  1.00  0.00           H  
HETATM   26  H15 UNL     1       4.314   0.924   1.796  1.00  0.00           H  
HETATM   27  H16 UNL     1       6.088  -0.025  -0.612  1.00  0.00           H  
CONECT    1    2   12   13   14
CONECT    2    3   15   16
CONECT    3    4   17   18
CONECT    4    5   19   20
CONECT    5    6   21   22
CONECT    6    7    7   23
CONECT    7    8   24
CONECT    8    9    9   25
CONECT    9   10   26
CONECT   10   11   11   27
END
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SMILES for HMDB0243576 (2,4-Decadienal)

CCCCCC=CC=CC=O
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INCHI for HMDB0243576 (2,4-Decadienal)

InChI=1S/C10H16O/c1-2-3-4-5-6-7-8-9-10-11/h6-10H,2-5H2,1H3
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View in JSmolView Stereo Labels
SynonymsNot Available
Chemical FormulaC10H16O
Average Molecular Weight152.237
Monoisotopic Molecular Weight152.120115135
IUPAC Namedeca-2,4-dienal
Traditional Namedeca-2,4-dienal
CAS Registry NumberNot Available
SMILES
CCCCCC=CC=CC=O
InChI Identifier
InChI=1S/C10H16O/c1-2-3-4-5-6-7-8-9-10-11/h6-10H,2-5H2,1H3
InChI KeyJZQKTMZYLHNFPL-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as medium-chain aldehydes. These are an aldehyde with a chain length containing between 6 and 12 carbon atoms.
KingdomOrganic compounds
Super ClassOrganic oxygen compounds
ClassOrganooxygen compounds
Sub ClassCarbonyl compounds
Direct ParentMedium-chain aldehydes
Alternative Parents
Substituents
  • Medium-chain aldehyde
  • Enal
  • Alpha,beta-unsaturated aldehyde
  • Organic oxide
  • Hydrocarbon derivative
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
Not AvailableNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
Predicted Chromatographic Properties
Spectra
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB029715
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound16899
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]