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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-10 21:14:57 UTC
Update Date2021-09-26 22:51:31 UTC
HMDB IDHMDB0244053
Secondary Accession NumbersNone
Metabolite Identification
Common Name1,10-Phenanthroline
Description1,10-Phenanthroline, also known as 4,5-diazaphenanthrene or orthophenanthroline, belongs to the class of organic compounds known as phenanthrolines. These are aromatic polycyclic compounds containing the phenanthroline skeleton, which is a derivative of phenanthrene, and consists of two pyridine rings non-linearly joined by a benzene ring. 1,10-Phenanthroline exists in all living organisms, ranging from bacteria to humans. Based on a literature review a significant number of articles have been published on 1,10-Phenanthroline. This compound has been identified in human blood as reported by (PMID: 31557052 ). 1,10-phenanthroline is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically 1,10-Phenanthroline is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
4,5-DiazaphenanthreneChEBI
O-PhenanthrolineChEBI
OrthophenanthrolineChEBI
PhenChEBI
(OP)2Cu(I)HMDB
1,10-Phenanthroline monohydrochorideHMDB
5,6-Dihydro-1,10-phenanthrolineHMDB
1,10-Phenanthroline, zinc saltHMDB
O-PHEHMDB
1,10-Phenanthroline hydrateHMDB
1,10-Phenanthroline monoperchlorateHMDB
Copper phenanthrolineHMDB
1,10-Phenanthroline hydrochorideHMDB
Chemical FormulaC12H8N2
Average Molecular Weight180.2053
Monoisotopic Molecular Weight180.068748266
IUPAC Name1,10-phenanthroline
Traditional Namephen
CAS Registry NumberNot Available
SMILES
C1=CC2=CC=C3C=CC=NC3=C2N=C1
InChI Identifier
InChI=1S/C12H8N2/c1-3-9-5-6-10-4-2-8-14-12(10)11(9)13-7-1/h1-8H
InChI KeyDGEZNRSVGBDHLK-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as phenanthrolines. These are aromatic polycyclic compounds containing the phenanthroline skeleton, which is a derivative of phenanthrene, and consists of two pyridine rings non-linearly joined by a benzene ring.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassPhenanthrolines
Sub ClassNot Available
Direct ParentPhenanthrolines
Alternative Parents
Substituents
  • 1,10-phenanthroline
  • Quinoline
  • Benzenoid
  • Pyridine
  • Heteroaromatic compound
  • Azacycle
  • Organic nitrogen compound
  • Organopnictogen compound
  • Hydrocarbon derivative
  • Organonitrogen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP2.31ALOGPS
logP2.29ChemAxon
logS-3.1ALOGPS
pKa (Strongest Basic)4.8ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count2ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area25.78 ŲChemAxon
Rotatable Bond Count0ChemAxon
Refractivity53.9 m³·mol⁻¹ChemAxon
Polarizability19.26 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+143.86830932474
DeepCCS[M-H]-141.48930932474
DeepCCS[M-2H]-176.78430932474
DeepCCS[M+Na]+151.49930932474
AllCCS[M+H]+138.332859911
AllCCS[M+H-H2O]+133.632859911
AllCCS[M+NH4]+142.632859911
AllCCS[M+Na]+143.932859911
AllCCS[M-H]-140.932859911
AllCCS[M+Na-2H]-140.732859911
AllCCS[M+HCOO]-140.532859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
1,10-PhenanthrolineC1=CC2=CC=C3C=CC=NC3=C2N=C12741.0Standard polar33892256
1,10-PhenanthrolineC1=CC2=CC=C3C=CC=NC3=C2N=C11772.3Standard non polar33892256
1,10-PhenanthrolineC1=CC2=CC=C3C=CC=NC3=C2N=C12018.7Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Experimental GC-MSGC-MS Spectrum - 1,10-Phenanthroline GC-EI-TOF (Non-derivatized)splash10-0fai-1900000000-8bf54d7a505254cd0f422017-09-12HMDB team, MONA, MassBankView Spectrum
Experimental GC-MSGC-MS Spectrum - 1,10-Phenanthroline GC-EI-TOF (Non-derivatized)splash10-003r-1900000000-bf66a4d49c83dd24535e2017-09-12HMDB team, MONA, MassBankView Spectrum
Experimental GC-MSGC-MS Spectrum - 1,10-Phenanthroline GC-EI-TOF (Non-derivatized)splash10-003r-4900000000-e878f31ffa5b4af39dfd2017-09-12HMDB team, MONA, MassBankView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 1,10-Phenanthroline GC-MS (Non-derivatized) - 70eV, Positivesplash10-001i-0900000000-eb76a0de05170e5f9dae2021-09-23Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 1,10-Phenanthroline GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
MSMass Spectrum (Electron Ionization)splash10-001i-1900000000-e3edab983e41e183110a2014-09-20Not AvailableView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Experimental LC-MS/MSLC-MS/MS Spectrum - 1,10-Phenanthroline LC-ESI-QQ , positive-QTOFsplash10-001i-0900000000-7bdef677e6a80f05aa752017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - 1,10-Phenanthroline LC-ESI-QQ , positive-QTOFsplash10-001i-0900000000-555e8d3f751a47049c5a2017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - 1,10-Phenanthroline LC-ESI-QQ , positive-QTOFsplash10-001i-0900000000-c48df88a05c1dbab0adc2017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - 1,10-Phenanthroline LC-ESI-QQ , positive-QTOFsplash10-001i-0900000000-07ee18512e76f5b25dd12017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - 1,10-Phenanthroline LC-ESI-QQ , positive-QTOFsplash10-0fb9-0900000000-7a08b5b37861250df6bd2017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - 1,10-Phenanthroline LC-ESI-QTOF , positive-QTOFsplash10-001i-0900000000-94a0600a96f48f8aa1452017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - 1,10-Phenanthroline LC-ESI-QTOF , positive-QTOFsplash10-0fc0-0900000000-0f2b71fb75d6e9f09b6c2017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - 1,10-Phenanthroline ESI-ITFT , positive-QTOFsplash10-001i-0900000000-29a83efe3a4c61b6e7602017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - 1,10-Phenanthroline ESI-ITFT , positive-QTOFsplash10-001i-0900000000-f6eedb340d4cf4ab269f2017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - 1,10-Phenanthroline ESI-ITFT , positive-QTOFsplash10-001i-0900000000-b8ee2e5a776aecb532ca2017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - 1,10-Phenanthroline ESI-ITFT , positive-QTOFsplash10-00di-0900000000-88682d0eaadc3985ae6f2017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - 1,10-Phenanthroline ESI-ITFT , positive-QTOFsplash10-001i-0900000000-5c3af3894358cf9d55fc2017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - 1,10-Phenanthroline ESI-ITFT , positive-QTOFsplash10-001i-0900000000-29a83efe3a4c61b6e7602017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - 1,10-Phenanthroline ESI-ITFT , positive-QTOFsplash10-001i-0900000000-e7952d19ca3578ac45012017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - 1,10-Phenanthroline ESI-ITFT , positive-QTOFsplash10-001i-0900000000-e7952d19ca3578ac45012017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - 1,10-Phenanthroline ESI-ITFT , positive-QTOFsplash10-001i-0900000000-62142b81fd0b92ba0c9d2017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - 1,10-Phenanthroline ESI-ITFT , positive-QTOFsplash10-001i-0900000000-9cbaa490715b11601fdc2017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - 1,10-Phenanthroline ESI-ITFT , positive-QTOFsplash10-001i-0900000000-7095641d365002c9b1432017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - 1,10-Phenanthroline ESI-ITFT , positive-QTOFsplash10-0f89-0900000000-c2a7113134a8fdaed4962017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - 1,10-Phenanthroline ESI-ITFT , positive-QTOFsplash10-0fb9-0900000000-b0fd72c65f3813200a202017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - 1,10-Phenanthroline ESI-ITFT , positive-QTOFsplash10-004i-2900000000-4ffad714811e857318922017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - 1,10-Phenanthroline APCI-ITFT , positive-QTOFsplash10-001i-0900000000-e090efe0cddbe7929cb22017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - 1,10-Phenanthroline APCI-ITFT , positive-QTOFsplash10-001i-0900000000-4fc72504435ed95451ac2017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - 1,10-Phenanthroline APCI-ITFT , positive-QTOFsplash10-001i-0900000000-ea4fdf798419a11217f22017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - 1,10-Phenanthroline APCI-ITFT , positive-QTOFsplash10-001i-0900000000-e090efe0cddbe7929cb22017-09-14HMDB team, MONAView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDDB02365
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID1278
KEGG Compound IDC00604
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkPhenanthroline
METLIN IDNot Available
PubChem Compound1318
PDB IDNot Available
ChEBI ID44975
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]