Hmdb loader
Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-10 21:59:54 UTC
Update Date2021-09-26 22:52:57 UTC
HMDB IDHMDB0244870
Secondary Accession NumbersNone
Metabolite Identification
Common Name1H-1,5-Benzodiazepine
Description1H-1,5-Benzodiazepine belongs to the class of organic compounds known as benzodiazepines. These are organic compounds containing a benzene ring fused to either isomers of diazepine(unsaturated seven-member heterocycle with two nitrogen atoms replacing two carbon atoms). Based on a literature review very few articles have been published on 1H-1,5-Benzodiazepine. This compound has been identified in human blood as reported by (PMID: 31557052 ). 1h-1,5-benzodiazepine is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically 1H-1,5-Benzodiazepine is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
SynonymsNot Available
Chemical FormulaC9H8N2
Average Molecular Weight144.177
Monoisotopic Molecular Weight144.068748266
IUPAC Name1H-1,5-benzodiazepine
Traditional Name1H-1,5-benzodiazepine
CAS Registry NumberNot Available
SMILES
N1C=CC=NC2=CC=CC=C12
InChI Identifier
InChI=1S/C9H8N2/c1-2-5-9-8(4-1)10-6-3-7-11-9/h1-7,10H
InChI KeyZVAPWJGRRUHKGP-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as benzodiazepines. These are organic compounds containing a benzene ring fused to either isomers of diazepine(unsaturated seven-member heterocycle with two nitrogen atoms replacing two carbon atoms).
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassBenzodiazepines
Sub ClassNot Available
Direct ParentBenzodiazepines
Alternative Parents
Substituents
  • Benzodiazepine
  • Para-diazepine
  • Secondary aliphatic/aromatic amine
  • Benzenoid
  • Enamine
  • Allylamine
  • Secondary amine
  • Propargyl-type 1,3-dipolar organic compound
  • Organic 1,3-dipolar compound
  • Azacycle
  • Organonitrogen compound
  • Amine
  • Hydrocarbon derivative
  • Organopnictogen compound
  • Organic nitrogen compound
  • Imine
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP1.69ALOGPS
logP1.41ChemAxon
logS-2.1ALOGPS
pKa (Strongest Acidic)15.26ChemAxon
pKa (Strongest Basic)7.12ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count2ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area24.39 ŲChemAxon
Rotatable Bond Count0ChemAxon
Refractivity49.02 m³·mol⁻¹ChemAxon
Polarizability15.28 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M-2H]-160.24630932474
DeepCCS[M+Na]+135.46230932474

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
1H-1,5-BenzodiazepineN1C=CC=NC2=CC=CC=C122432.2Standard polar33892256
1H-1,5-BenzodiazepineN1C=CC=NC2=CC=CC=C121507.4Standard non polar33892256
1H-1,5-BenzodiazepineN1C=CC=NC2=CC=CC=C121563.2Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
1H-1,5-Benzodiazepine,1TMS,isomer #1C[Si](C)(C)N1C=CC=NC2=CC=CC=C211696.5Semi standard non polar33892256
1H-1,5-Benzodiazepine,1TMS,isomer #1C[Si](C)(C)N1C=CC=NC2=CC=CC=C211537.7Standard non polar33892256
1H-1,5-Benzodiazepine,1TMS,isomer #1C[Si](C)(C)N1C=CC=NC2=CC=CC=C212573.8Standard polar33892256
1H-1,5-Benzodiazepine,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)N1C=CC=NC2=CC=CC=C211879.9Semi standard non polar33892256
1H-1,5-Benzodiazepine,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)N1C=CC=NC2=CC=CC=C211740.8Standard non polar33892256
1H-1,5-Benzodiazepine,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)N1C=CC=NC2=CC=CC=C212820.8Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 1H-1,5-Benzodiazepine GC-MS (Non-derivatized) - 70eV, Positivesplash10-00kf-1900000000-29394422190b9afb70032021-09-23Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 1H-1,5-Benzodiazepine GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1H-1,5-Benzodiazepine 10V, Negative-QTOFsplash10-0006-0900000000-a43e340bb2a95a9ab2aa2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1H-1,5-Benzodiazepine 20V, Negative-QTOFsplash10-0006-0900000000-a43e340bb2a95a9ab2aa2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1H-1,5-Benzodiazepine 40V, Negative-QTOFsplash10-0006-3900000000-f7406001ce4eeda5ed6e2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1H-1,5-Benzodiazepine 10V, Positive-QTOFsplash10-0002-0900000000-95bbe2b7dfc9b9638ba02021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1H-1,5-Benzodiazepine 20V, Positive-QTOFsplash10-0002-0900000000-95bbe2b7dfc9b9638ba02021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1H-1,5-Benzodiazepine 40V, Positive-QTOFsplash10-014i-8900000000-207322f08d7af51df8fd2021-10-12Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID379935
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound429551
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]