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Showing metabocard for 2-Quinolinylmethanol (HMDB0245312)

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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-10 22:23:46 UTC
Update Date2021-09-26 22:53:43 UTC
HMDB IDHMDB0245312
Secondary Accession NumbersNone
Metabolite Identification
Common Name2-Quinolinylmethanol
Description2-Quinolinylmethanol belongs to the class of organic compounds known as quinolines and derivatives. Quinolines and derivatives are compounds containing a quinoline moiety, which consists of a benzene ring fused to a pyrimidine ring to form benzo[b]azabenzene. Based on a literature review a significant number of articles have been published on 2-Quinolinylmethanol. This compound has been identified in human blood as reported by (PMID: 31557052 ). 2-quinolinylmethanol is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically 2-Quinolinylmethanol is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
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MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0245312 (2-Quinolinylmethanol)

  Mrv1652305152113332D          

 12 13  0  0  0  0            999 V2000
   -0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    2.4750    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    3.3000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  2  0  0  0  0
  3  1  1  0  0  0  0
  4  2  1  0  0  0  0
  6  5  2  0  0  0  0
  8  3  2  0  0  0  0
  8  5  1  0  0  0  0
  9  6  1  0  0  0  0
  9  7  1  0  0  0  0
 10  4  2  0  0  0  0
 10  8  1  0  0  0  0
 11  9  2  0  0  0  0
 11 10  1  0  0  0  0
 12  7  1  0  0  0  0
M  END
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3D MOL for HMDB0245312 (2-Quinolinylmethanol)

HMDB0245312
     RDKit          3D
2-Quinolinylmethanol
 21 22  0  0  0  0  0  0  0  0999 V2000
    3.9515   -0.0520    0.1581 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0277   -0.4239   -0.8221 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6595   -0.1772   -0.2791 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4535    0.3330    0.9867 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1791    0.5565    1.4769 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9375    0.2711    0.7017 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2193    0.4753    1.1431 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3221    0.1884    0.3652 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0969   -0.3210   -0.8975 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8048   -0.5236   -1.3344 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6931   -0.2374   -0.5576 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5647   -0.4468   -1.0133 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.7588    0.3758   -0.2217 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2195    0.1759   -1.7370 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1725   -1.4841   -1.1034 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3332    0.5503    1.5784 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0082    0.9548    2.4643 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3404    0.8829    2.1567 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3237    0.3650    0.7526 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9712   -0.5417   -1.4975 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6194   -0.9215   -2.3202 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
 12  3  1  0
 11  6  1  0
  1 13  1  0
  2 14  1  0
  2 15  1  0
  4 16  1  0
  5 17  1  0
  7 18  1  0
  8 19  1  0
  9 20  1  0
 10 21  1  0
M  END
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3D SDF for HMDB0245312 (2-Quinolinylmethanol)

  Mrv1652305152113332D          

 12 13  0  0  0  0            999 V2000
   -0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    2.4750    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    3.3000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  2  0  0  0  0
  3  1  1  0  0  0  0
  4  2  1  0  0  0  0
  6  5  2  0  0  0  0
  8  3  2  0  0  0  0
  8  5  1  0  0  0  0
  9  6  1  0  0  0  0
  9  7  1  0  0  0  0
 10  4  2  0  0  0  0
 10  8  1  0  0  0  0
 11  9  2  0  0  0  0
 11 10  1  0  0  0  0
 12  7  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0245312

> <DATABASE_NAME>
hmdb

> <SMILES>
OCC1=NC2=CC=CC=C2C=C1

> <INCHI_IDENTIFIER>
InChI=1S/C10H9NO/c12-7-9-6-5-8-3-1-2-4-10(8)11-9/h1-6,12H,7H2

> <INCHI_KEY>
HREHOXSRYOZKNT-UHFFFAOYSA-N

> <FORMULA>
C10H9NO

> <MOLECULAR_WEIGHT>
159.188

> <EXACT_MASS>
159.068413914

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
21

> <JCHEM_AVERAGE_POLARIZABILITY>
17.17926745348816

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(quinolin-2-yl)methanol

> <ALOGPS_LOGP>
1.63

> <JCHEM_LOGP>
1.445022594333333

> <ALOGPS_LOGS>
-1.91

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.24755444456384

> <JCHEM_PKA_STRONGEST_BASIC>
4.0949783007043505

> <JCHEM_POLAR_SURFACE_AREA>
33.120000000000005

> <JCHEM_REFRACTIVITY>
46.272999999999996

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.96e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
quinolin-2-ylmethanol

> <JCHEM_VEBER_RULE>
1

$$$$
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3D-SDF for HMDB0245312 (2-Quinolinylmethanol)

HMDB0245312
     RDKit          3D
2-Quinolinylmethanol
 21 22  0  0  0  0  0  0  0  0999 V2000
    3.9515   -0.0520    0.1581 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0277   -0.4239   -0.8221 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6595   -0.1772   -0.2791 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4535    0.3330    0.9867 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1791    0.5565    1.4769 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9375    0.2711    0.7017 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2193    0.4753    1.1431 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3221    0.1884    0.3652 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0969   -0.3210   -0.8975 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8048   -0.5236   -1.3344 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6931   -0.2374   -0.5576 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5647   -0.4468   -1.0133 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.7588    0.3758   -0.2217 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2195    0.1759   -1.7370 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1725   -1.4841   -1.1034 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3332    0.5503    1.5784 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0082    0.9548    2.4643 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3404    0.8829    2.1567 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3237    0.3650    0.7526 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9712   -0.5417   -1.4975 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6194   -0.9215   -2.3202 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
 12  3  1  0
 11  6  1  0
  1 13  1  0
  2 14  1  0
  2 15  1  0
  4 16  1  0
  5 17  1  0
  7 18  1  0
  8 19  1  0
  9 20  1  0
 10 21  1  0
M  END
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PDB for HMDB0245312 (2-Quinolinylmethanol)

HEADER    PROTEIN                                 15-MAY-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   15-MAY-21         0                                  
HETATM    1  C   UNK     0      -1.334   2.310   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.334   3.850   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -0.000   1.540   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.000   4.620   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.001   2.310   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.335   4.620   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       4.001   3.850   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.334   3.850   0.000  0.00  0.00           C+0
HETATM   11  N   UNK     0       2.667   4.620   0.000  0.00  0.00           N+0
HETATM   12  O   UNK     0       5.335   6.160   0.000  0.00  0.00           O+0
CONECT    1    2    3                                                       
CONECT    2    1    4                                                       
CONECT    3    1    8                                                       
CONECT    4    2   10                                                       
CONECT    5    6    8                                                       
CONECT    6    5    9                                                       
CONECT    7    9   12                                                       
CONECT    8    3    5   10                                                  
CONECT    9    6    7   11                                                  
CONECT   10    4    8   11                                                  
CONECT   11    9   10                                                       
CONECT   12    7                                                            
MASTER        0    0    0    0    0    0    0    0   12    0   26    0
END
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3D PDB for HMDB0245312 (2-Quinolinylmethanol)

COMPND    HMDB0245312
HETATM    1  O1  UNL     1       3.952  -0.052   0.158  1.00  0.00           O  
HETATM    2  C1  UNL     1       3.028  -0.424  -0.822  1.00  0.00           C  
HETATM    3  C2  UNL     1       1.660  -0.177  -0.279  1.00  0.00           C  
HETATM    4  C3  UNL     1       1.453   0.333   0.987  1.00  0.00           C  
HETATM    5  C4  UNL     1       0.179   0.557   1.477  1.00  0.00           C  
HETATM    6  C5  UNL     1      -0.937   0.271   0.702  1.00  0.00           C  
HETATM    7  C6  UNL     1      -2.219   0.475   1.143  1.00  0.00           C  
HETATM    8  C7  UNL     1      -3.322   0.188   0.365  1.00  0.00           C  
HETATM    9  C8  UNL     1      -3.097  -0.321  -0.897  1.00  0.00           C  
HETATM   10  C9  UNL     1      -1.805  -0.524  -1.334  1.00  0.00           C  
HETATM   11  C10 UNL     1      -0.693  -0.237  -0.558  1.00  0.00           C  
HETATM   12  N1  UNL     1       0.565  -0.447  -1.013  1.00  0.00           N  
HETATM   13  H1  UNL     1       4.759   0.376  -0.222  1.00  0.00           H  
HETATM   14  H2  UNL     1       3.219   0.176  -1.737  1.00  0.00           H  
HETATM   15  H3  UNL     1       3.173  -1.484  -1.103  1.00  0.00           H  
HETATM   16  H4  UNL     1       2.333   0.550   1.578  1.00  0.00           H  
HETATM   17  H5  UNL     1       0.008   0.955   2.464  1.00  0.00           H  
HETATM   18  H6  UNL     1      -2.340   0.883   2.157  1.00  0.00           H  
HETATM   19  H7  UNL     1      -4.324   0.365   0.753  1.00  0.00           H  
HETATM   20  H8  UNL     1      -3.971  -0.542  -1.497  1.00  0.00           H  
HETATM   21  H9  UNL     1      -1.619  -0.922  -2.320  1.00  0.00           H  
CONECT    1    2   13
CONECT    2    3   14   15
CONECT    3    4    4   12
CONECT    4    5   16
CONECT    5    6    6   17
CONECT    6    7   11
CONECT    7    8    8   18
CONECT    8    9   19
CONECT    9   10   10   20
CONECT   10   11   21
CONECT   11   12   12
END
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SMILES for HMDB0245312 (2-Quinolinylmethanol)

OCC1=NC2=CC=CC=C2C=C1
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INCHI for HMDB0245312 (2-Quinolinylmethanol)

InChI=1S/C10H9NO/c12-7-9-6-5-8-3-1-2-4-10(8)11-9/h1-6,12H,7H2
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View in JSmolView NMR AssignmentsView Stereo Labels
Synonyms
ValueSource
2-HydroxymethylquinolineHMDB
Chemical FormulaC10H9NO
Average Molecular Weight159.188
Monoisotopic Molecular Weight159.068413914
IUPAC Name(quinolin-2-yl)methanol
Traditional Namequinolin-2-ylmethanol
CAS Registry NumberNot Available
SMILES
OCC1=NC2=CC=CC=C2C=C1
InChI Identifier
InChI=1S/C10H9NO/c12-7-9-6-5-8-3-1-2-4-10(8)11-9/h1-6,12H,7H2
InChI KeyHREHOXSRYOZKNT-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as quinolines and derivatives. Quinolines and derivatives are compounds containing a quinoline moiety, which consists of a benzene ring fused to a pyrimidine ring to form benzo[b]azabenzene.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassQuinolines and derivatives
Sub ClassNot Available
Direct ParentQuinolines and derivatives
Alternative Parents
Substituents
  • Quinoline
  • Benzenoid
  • Pyridine
  • Heteroaromatic compound
  • Azacycle
  • Organic nitrogen compound
  • Organic oxygen compound
  • Organopnictogen compound
  • Hydrocarbon derivative
  • Aromatic alcohol
  • Primary alcohol
  • Organooxygen compound
  • Organonitrogen compound
  • Alcohol
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Biological locationSource
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
Predicted Chromatographic Properties
Spectra
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID65957
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound73196
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]