Hmdb loader

Showing metabocard for 2,2'-Dithiodipyridine (HMDB0245356)

Jump To Section:
IdentificationTaxonomyOntologyPhysical propertiesSpectraBiological propertiesConcentrationsLinksReferencesXML
Show more...Show more...Show more...Show more...
Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-10 22:26:05 UTC
Update Date2021-09-26 22:53:47 UTC
HMDB IDHMDB0245356
Secondary Accession NumbersNone
Metabolite Identification
Common Name2,2'-Dithiodipyridine
Description2,2'-Dithiodipyridine, also known as 2,2'-dipyridyl disulfide or aldrithiol-2, belongs to the class of organic compounds known as pyridines and derivatives. Pyridines and derivatives are compounds containing a pyridine ring, which is a six-member aromatic heterocycle which consists of one nitrogen atom and five carbon atoms. Based on a literature review a significant number of articles have been published on 2,2'-Dithiodipyridine. This compound has been identified in human blood as reported by (PMID: 31557052 ). 2,2'-dithiodipyridine is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically 2,2'-Dithiodipyridine is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0245356 (2,2'-Dithiodipyridine)

  Mrv1533004231522162D          

 14 15  0  0  0  0            999 V2000
    0.7145   -1.2375    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -2.8875    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  3  8  1  0  0  0  0
  1  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
  9 14  1  0  0  0  0
M  END
Download

3D MOL for HMDB0245356 (2,2'-Dithiodipyridine)

HMDB0245356
     RDKit          3D
2,2'-Dithiodipyridine
 22 23  0  0  0  0  0  0  0  0999 V2000
    4.0022    0.7598   -0.3944 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0868   -0.4763    0.2119 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9902   -1.3043    0.0672 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8700   -0.9392   -0.6350 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5341   -2.1076   -0.7381 S   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7492   -1.7460    0.9203 S   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9588   -0.5656    0.3931 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1259   -1.0392   -0.1634 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0802   -0.1374   -0.5802 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9005    1.2234   -0.4564 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7126    1.6515    0.1084 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7788    0.7722    0.5163 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.8503    0.2760   -1.2007 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.8804    1.1360   -1.1024 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8370    1.4366   -0.3055 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9570   -0.7882    0.7702 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0221   -2.2771    0.5278 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3033   -2.1205   -0.2779 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0120   -0.5076   -1.0243 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6646    1.9357   -0.7904 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5786    2.7118    0.2021 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8347    2.1061   -1.5683 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
  4 13  1  0
 13 14  2  0
 14  1  1  0
 12  7  1  0
  1 15  1  0
  2 16  1  0
  3 17  1  0
  8 18  1  0
  9 19  1  0
 10 20  1  0
 11 21  1  0
 14 22  1  0
M  END
Download

3D SDF for HMDB0245356 (2,2'-Dithiodipyridine)

  Mrv1533004231522162D          

 14 15  0  0  0  0            999 V2000
    0.7145   -1.2375    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -2.8875    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  3  8  1  0  0  0  0
  1  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
  9 14  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0245356

> <DATABASE_NAME>
hmdb

> <SMILES>
S(SC1=CC=CC=N1)C1=CC=CC=N1

> <INCHI_IDENTIFIER>
InChI=1S/C10H8N2S2/c1-3-7-11-9(5-1)13-14-10-6-2-4-8-12-10/h1-8H

> <INCHI_KEY>
HAXFWIACAGNFHA-UHFFFAOYSA-N

> <FORMULA>
C10H8N2S2

> <MOLECULAR_WEIGHT>
220.31

> <EXACT_MASS>
220.012890614

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
22

> <JCHEM_AVERAGE_POLARIZABILITY>
21.769802712623175

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2-(pyridin-2-yldisulfanyl)pyridine

> <ALOGPS_LOGP>
2.38

> <JCHEM_LOGP>
3.3273151566666668

> <ALOGPS_LOGS>
-2.90

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
2.6299309357816694

> <JCHEM_POLAR_SURFACE_AREA>
25.78

> <JCHEM_REFRACTIVITY>
58.7734

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.75e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2,2'-dipyridyldisulfide

> <JCHEM_VEBER_RULE>
1

$$$$
Download

3D-SDF for HMDB0245356 (2,2'-Dithiodipyridine)

HMDB0245356
     RDKit          3D
2,2'-Dithiodipyridine
 22 23  0  0  0  0  0  0  0  0999 V2000
    4.0022    0.7598   -0.3944 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0868   -0.4763    0.2119 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9902   -1.3043    0.0672 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8700   -0.9392   -0.6350 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5341   -2.1076   -0.7381 S   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7492   -1.7460    0.9203 S   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9588   -0.5656    0.3931 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1259   -1.0392   -0.1634 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0802   -0.1374   -0.5802 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9005    1.2234   -0.4564 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7126    1.6515    0.1084 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7788    0.7722    0.5163 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.8503    0.2760   -1.2007 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.8804    1.1360   -1.1024 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8370    1.4366   -0.3055 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9570   -0.7882    0.7702 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0221   -2.2771    0.5278 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3033   -2.1205   -0.2779 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0120   -0.5076   -1.0243 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6646    1.9357   -0.7904 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5786    2.7118    0.2021 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8347    2.1061   -1.5683 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
  4 13  1  0
 13 14  2  0
 14  1  1  0
 12  7  1  0
  1 15  1  0
  2 16  1  0
  3 17  1  0
  8 18  1  0
  9 19  1  0
 10 20  1  0
 11 21  1  0
 14 22  1  0
M  END
Download

PDB for HMDB0245356 (2,2'-Dithiodipyridine)

HEADER    PROTEIN                                 23-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   23-APR-15         0                                  
HETATM    1  S   UNK     0       1.334  -2.310   0.000  0.00  0.00           S+0
HETATM    2  S   UNK     0       2.667  -3.080   0.000  0.00  0.00           S+0
HETATM    3  C   UNK     0       2.667  -4.620   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.001  -5.390   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.001  -6.930   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.667  -7.700   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.334  -6.930   0.000  0.00  0.00           C+0
HETATM    8  N   UNK     0       1.334  -5.390   0.000  0.00  0.00           N+0
HETATM    9  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM   14  N   UNK     0       2.667   0.000   0.000  0.00  0.00           N+0
CONECT    1    2    9                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4    8                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    3                                                       
CONECT    9    1   10   14                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13    9                                                       
MASTER        0    0    0    0    0    0    0    0   14    0   30    0
END
Download

3D PDB for HMDB0245356 (2,2'-Dithiodipyridine)

COMPND    HMDB0245356
HETATM    1  C1  UNL     1       4.002   0.760  -0.394  1.00  0.00           C  
HETATM    2  C2  UNL     1       4.087  -0.476   0.212  1.00  0.00           C  
HETATM    3  C3  UNL     1       2.990  -1.304   0.067  1.00  0.00           C  
HETATM    4  C4  UNL     1       1.870  -0.939  -0.635  1.00  0.00           C  
HETATM    5  S1  UNL     1       0.534  -2.108  -0.738  1.00  0.00           S  
HETATM    6  S2  UNL     1      -0.749  -1.746   0.920  1.00  0.00           S  
HETATM    7  C5  UNL     1      -1.959  -0.566   0.393  1.00  0.00           C  
HETATM    8  C6  UNL     1      -3.126  -1.039  -0.163  1.00  0.00           C  
HETATM    9  C7  UNL     1      -4.080  -0.137  -0.580  1.00  0.00           C  
HETATM   10  C8  UNL     1      -3.900   1.223  -0.456  1.00  0.00           C  
HETATM   11  C9  UNL     1      -2.713   1.651   0.108  1.00  0.00           C  
HETATM   12  N1  UNL     1      -1.779   0.772   0.516  1.00  0.00           N  
HETATM   13  N2  UNL     1       1.850   0.276  -1.201  1.00  0.00           N  
HETATM   14  C10 UNL     1       2.880   1.136  -1.102  1.00  0.00           C  
HETATM   15  H1  UNL     1       4.837   1.437  -0.306  1.00  0.00           H  
HETATM   16  H2  UNL     1       4.957  -0.788   0.770  1.00  0.00           H  
HETATM   17  H3  UNL     1       3.022  -2.277   0.528  1.00  0.00           H  
HETATM   18  H4  UNL     1      -3.303  -2.120  -0.278  1.00  0.00           H  
HETATM   19  H5  UNL     1      -5.012  -0.508  -1.024  1.00  0.00           H  
HETATM   20  H6  UNL     1      -4.665   1.936  -0.790  1.00  0.00           H  
HETATM   21  H7  UNL     1      -2.579   2.712   0.202  1.00  0.00           H  
HETATM   22  H8  UNL     1       2.835   2.106  -1.568  1.00  0.00           H  
CONECT    1    2    2   14   15
CONECT    2    3   16
CONECT    3    4    4   17
CONECT    4    5   13
CONECT    5    6
CONECT    6    7
CONECT    7    8    8   12
CONECT    8    9   18
CONECT    9   10   10   19
CONECT   10   11   20
CONECT   11   12   12   21
CONECT   13   14   14
CONECT   14   22
END
Download

SMILES for HMDB0245356 (2,2'-Dithiodipyridine)

S(SC1=CC=CC=N1)C1=CC=CC=N1
Download

INCHI for HMDB0245356 (2,2'-Dithiodipyridine)

InChI=1S/C10H8N2S2/c1-3-7-11-9(5-1)13-14-10-6-2-4-8-12-10/h1-8H
Download
View in JSmolView Stereo Labels
Synonyms
Chemical FormulaC10H8N2S2
Average Molecular Weight220.31
Monoisotopic Molecular Weight220.012890614
IUPAC Name2-(pyridin-2-yldisulfanyl)pyridine
Traditional Name2,2'-dipyridyldisulfide
CAS Registry NumberNot Available
SMILES
S(SC1=CC=CC=N1)C1=CC=CC=N1
InChI Identifier
InChI=1S/C10H8N2S2/c1-3-7-11-9(5-1)13-14-10-6-2-4-8-12-10/h1-8H
InChI KeyHAXFWIACAGNFHA-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as pyridines and derivatives. Pyridines and derivatives are compounds containing a pyridine ring, which is a six-member aromatic heterocycle which consists of one nitrogen atom and five carbon atoms.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassPyridines and derivatives
Sub ClassNot Available
Direct ParentPyridines and derivatives
Alternative Parents
Substituents
  • Pyridine
  • Heteroaromatic compound
  • Organic disulfide
  • Azacycle
  • Sulfenyl compound
  • Organic nitrogen compound
  • Organopnictogen compound
  • Hydrocarbon derivative
  • Organosulfur compound
  • Organonitrogen compound
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Biological locationSource
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
Predicted Chromatographic Properties
Spectra
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDC00054107
Chemspider ID58603
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia Link2,2'-Dipyridyldisulfide
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI ID143170
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1216501
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]