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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-10 22:28:19 UTC
Update Date2021-09-26 22:53:51 UTC
HMDB IDHMDB0245398
Secondary Accession NumbersNone
Metabolite Identification
Common NameDimethyl 2,3-bis(sulfanyl)butanedioate
DescriptionDimethyl 2,3-bis(sulfanyl)butanedioate, also known as dimercaptosuccinic acid dimethyl ester or dimethyl dimercaptosuccinic acid, belongs to the class of organic compounds known as fatty acid esters. These are carboxylic ester derivatives of a fatty acid. Based on a literature review very few articles have been published on Dimethyl 2,3-bis(sulfanyl)butanedioate. This compound has been identified in human blood as reported by (PMID: 31557052 ). Dimethyl 2,3-bis(sulfanyl)butanedioate is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Dimethyl 2,3-bis(sulfanyl)butanedioate is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
Dimethyl 2,3-bis(sulfanyl)butanedioic acidGenerator
Dimethyl 2,3-bis(sulphanyl)butanedioateGenerator
Dimethyl 2,3-bis(sulphanyl)butanedioic acidGenerator
Dimethyl dimercaptosuccinic acidHMDB
Dimethyl mercaptosuccinate, (r*,s*)-isomerHMDB
Di-me-meso-dmsaHMDB
Dimercaptosuccinic acid dimethyl esterHMDB
DiMeDMSAHMDB
Dimethyl mercaptosuccinateHMDB
Mercaptosuccinic acid dimethyl esterHMDB
Chemical FormulaC6H10O4S2
Average Molecular Weight210.26
Monoisotopic Molecular Weight210.00205115
IUPAC Name1,4-dimethyl 2,3-disulfanylbutanedioate
Traditional Name1,4-dimethyl 2,3-disulfanylbutanedioate
CAS Registry NumberNot Available
SMILES
COC(=O)C(S)C(S)C(=O)OC
InChI Identifier
InChI=1S/C6H10O4S2/c1-9-5(7)3(11)4(12)6(8)10-2/h3-4,11-12H,1-2H3
InChI KeyVVOFTOVXFWLOAY-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as fatty acid esters. These are carboxylic ester derivatives of a fatty acid.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassFatty Acyls
Sub ClassFatty acid esters
Direct ParentFatty acid esters
Alternative Parents
Substituents
  • Fatty acid ester
  • Dicarboxylic acid or derivatives
  • Methyl ester
  • Carboxylic acid ester
  • Carboxylic acid derivative
  • Alkylthiol
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organosulfur compound
  • Organooxygen compound
  • Carbonyl group
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP1.05ALOGPS
logP0.55ChemAxon
logS-2.5ALOGPS
pKa (Strongest Acidic)8.69ChemAxon
pKa (Strongest Basic)-6.9ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count2ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area52.6 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity48.01 m³·mol⁻¹ChemAxon
Polarizability19.78 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+135.89230932474
DeepCCS[M-H]-132.15430932474
DeepCCS[M-2H]-169.92630932474
DeepCCS[M+Na]+145.46630932474
AllCCS[M+H]+144.132859911
AllCCS[M+H-H2O]+140.632859911
AllCCS[M+NH4]+147.332859911
AllCCS[M+Na]+148.332859911
AllCCS[M-H]-143.032859911
AllCCS[M+Na-2H]-144.832859911
AllCCS[M+HCOO]-146.932859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Dimethyl 2,3-bis(sulfanyl)butanedioateCOC(=O)C(S)C(S)C(=O)OC2559.6Standard polar33892256
Dimethyl 2,3-bis(sulfanyl)butanedioateCOC(=O)C(S)C(S)C(=O)OC1430.3Standard non polar33892256
Dimethyl 2,3-bis(sulfanyl)butanedioateCOC(=O)C(S)C(S)C(=O)OC1472.7Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Dimethyl 2,3-bis(sulfanyl)butanedioate,1TMS,isomer #1COC(=O)C(S)C(S[Si](C)(C)C)C(=O)OC1592.9Semi standard non polar33892256
Dimethyl 2,3-bis(sulfanyl)butanedioate,1TMS,isomer #1COC(=O)C(S)C(S[Si](C)(C)C)C(=O)OC1502.2Standard non polar33892256
Dimethyl 2,3-bis(sulfanyl)butanedioate,1TMS,isomer #1COC(=O)C(S)C(S[Si](C)(C)C)C(=O)OC2283.1Standard polar33892256
Dimethyl 2,3-bis(sulfanyl)butanedioate,2TMS,isomer #1COC(=O)C(S[Si](C)(C)C)C(S[Si](C)(C)C)C(=O)OC1732.8Semi standard non polar33892256
Dimethyl 2,3-bis(sulfanyl)butanedioate,2TMS,isomer #1COC(=O)C(S[Si](C)(C)C)C(S[Si](C)(C)C)C(=O)OC1632.8Standard non polar33892256
Dimethyl 2,3-bis(sulfanyl)butanedioate,2TMS,isomer #1COC(=O)C(S[Si](C)(C)C)C(S[Si](C)(C)C)C(=O)OC2092.9Standard polar33892256
Dimethyl 2,3-bis(sulfanyl)butanedioate,1TBDMS,isomer #1COC(=O)C(S)C(S[Si](C)(C)C(C)(C)C)C(=O)OC1816.2Semi standard non polar33892256
Dimethyl 2,3-bis(sulfanyl)butanedioate,1TBDMS,isomer #1COC(=O)C(S)C(S[Si](C)(C)C(C)(C)C)C(=O)OC1692.3Standard non polar33892256
Dimethyl 2,3-bis(sulfanyl)butanedioate,1TBDMS,isomer #1COC(=O)C(S)C(S[Si](C)(C)C(C)(C)C)C(=O)OC2379.9Standard polar33892256
Dimethyl 2,3-bis(sulfanyl)butanedioate,2TBDMS,isomer #1COC(=O)C(S[Si](C)(C)C(C)(C)C)C(S[Si](C)(C)C(C)(C)C)C(=O)OC2163.1Semi standard non polar33892256
Dimethyl 2,3-bis(sulfanyl)butanedioate,2TBDMS,isomer #1COC(=O)C(S[Si](C)(C)C(C)(C)C)C(S[Si](C)(C)C(C)(C)C)C(=O)OC1989.1Standard non polar33892256
Dimethyl 2,3-bis(sulfanyl)butanedioate,2TBDMS,isomer #1COC(=O)C(S[Si](C)(C)C(C)(C)C)C(S[Si](C)(C)C(C)(C)C)C(=O)OC2334.6Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Dimethyl 2,3-bis(sulfanyl)butanedioate GC-MS (Non-derivatized) - 70eV, Positivesplash10-0zfr-1910000000-b224aa33f7cf108c091d2021-09-24Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Dimethyl 2,3-bis(sulfanyl)butanedioate GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dimethyl 2,3-bis(sulfanyl)butanedioate 10V, Positive-QTOFsplash10-0udi-0920000000-b1fcff762b5d74cb3a632021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dimethyl 2,3-bis(sulfanyl)butanedioate 20V, Positive-QTOFsplash10-0rt9-1910000000-0a01d6bb23bf930214ea2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dimethyl 2,3-bis(sulfanyl)butanedioate 40V, Positive-QTOFsplash10-0005-9300000000-db0a1ad16332894076ea2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dimethyl 2,3-bis(sulfanyl)butanedioate 10V, Negative-QTOFsplash10-0abi-8910000000-83435c9ebf5873a717822021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dimethyl 2,3-bis(sulfanyl)butanedioate 20V, Negative-QTOFsplash10-0gc0-2900000000-af9361ff09db8165bde32021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Dimethyl 2,3-bis(sulfanyl)butanedioate 40V, Negative-QTOFsplash10-00di-9200000000-1992bdc76d7027368f412021-10-12Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID2300628
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound3036650
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]