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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-10 22:30:03 UTC
Update Date2021-09-26 22:53:54 UTC
HMDB IDHMDB0245431
Secondary Accession NumbersNone
Metabolite Identification
Common Name2,3,4,5,6-Pentafluorobenzamide
Description2,3,4,5,6-Pentafluorobenzamide, also known as pentafluorobenzene-1-carboximidate, belongs to the class of organic compounds known as 4-halobenzoic acids and derivatives. These are benzoic acids or derivatives carrying a halogen atom at the 4-position of the benzene ring. Based on a literature review very few articles have been published on 2,3,4,5,6-Pentafluorobenzamide. This compound has been identified in human blood as reported by (PMID: 31557052 ). 2,3,4,5,6-pentafluorobenzamide is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically 2,3,4,5,6-Pentafluorobenzamide is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
Pentafluorobenzene-1-carboximidateHMDB
PentafluorobenzamideHMDB
Chemical FormulaC7H2F5NO
Average Molecular Weight211.091
Monoisotopic Molecular Weight211.005654503
IUPAC Namepentafluorobenzene-1-carboximidic acid
Traditional Namepentafluorobenzenecarboximidic acid
CAS Registry NumberNot Available
SMILES
OC(=N)C1=C(F)C(F)=C(F)C(F)=C1F
InChI Identifier
InChI=1S/C7H2F5NO/c8-2-1(7(13)14)3(9)5(11)6(12)4(2)10/h(H2,13,14)
InChI KeyWPWWHXPRJFDTTJ-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as 4-halobenzoic acids and derivatives. These are benzoic acids or derivatives carrying a halogen atom at the 4-position of the benzene ring.
KingdomOrganic compounds
Super ClassBenzenoids
ClassBenzene and substituted derivatives
Sub ClassBenzoic acids and derivatives
Direct Parent4-halobenzoic acids and derivatives
Alternative Parents
Substituents
  • 4-halobenzoic acid or derivatives
  • 3-halobenzoic acid or derivatives
  • 2-halobenzoic acid or derivatives
  • Benzamide
  • Benzoyl
  • Fluorobenzene
  • Halobenzene
  • Aryl fluoride
  • Aryl halide
  • Vinylogous halide
  • Carboxamide group
  • Primary carboxylic acid amide
  • Carboxylic acid derivative
  • Organofluoride
  • Organohalogen compound
  • Organic nitrogen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Organopnictogen compound
  • Organic oxygen compound
  • Organonitrogen compound
  • Organooxygen compound
  • Aromatic homomonocyclic compound
Molecular FrameworkAromatic homomonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP1.79ALOGPS
logP1.95ChemAxon
logS-3.9ALOGPS
pKa (Strongest Acidic)3.6ChemAxon
pKa (Strongest Basic)2.04ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count2ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area44.08 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity47.16 m³·mol⁻¹ChemAxon
Polarizability13.06 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+144.85230932474
DeepCCS[M-H]-142.45630932474
DeepCCS[M-2H]-176.13530932474
DeepCCS[M+Na]+150.84830932474
AllCCS[M+H]+141.032859911
AllCCS[M+H-H2O]+136.932859911
AllCCS[M+NH4]+144.932859911
AllCCS[M+Na]+146.032859911
AllCCS[M-H]-129.232859911
AllCCS[M+Na-2H]-129.432859911
AllCCS[M+HCOO]-129.732859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
2,3,4,5,6-PentafluorobenzamideOC(=N)C1=C(F)C(F)=C(F)C(F)=C1F1681.6Standard polar33892256
2,3,4,5,6-PentafluorobenzamideOC(=N)C1=C(F)C(F)=C(F)C(F)=C1F1115.9Standard non polar33892256
2,3,4,5,6-PentafluorobenzamideOC(=N)C1=C(F)C(F)=C(F)C(F)=C1F1321.5Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
2,3,4,5,6-Pentafluorobenzamide,2TMS,isomer #1C[Si](C)(C)N=C(O[Si](C)(C)C)C1=C(F)C(F)=C(F)C(F)=C1F1300.3Semi standard non polar33892256
2,3,4,5,6-Pentafluorobenzamide,2TMS,isomer #1C[Si](C)(C)N=C(O[Si](C)(C)C)C1=C(F)C(F)=C(F)C(F)=C1F1299.8Standard non polar33892256
2,3,4,5,6-Pentafluorobenzamide,2TMS,isomer #1C[Si](C)(C)N=C(O[Si](C)(C)C)C1=C(F)C(F)=C(F)C(F)=C1F1418.2Standard polar33892256
2,3,4,5,6-Pentafluorobenzamide,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)N=C(O[Si](C)(C)C(C)(C)C)C1=C(F)C(F)=C(F)C(F)=C1F1782.0Semi standard non polar33892256
2,3,4,5,6-Pentafluorobenzamide,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)N=C(O[Si](C)(C)C(C)(C)C)C1=C(F)C(F)=C(F)C(F)=C1F1684.0Standard non polar33892256
2,3,4,5,6-Pentafluorobenzamide,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)N=C(O[Si](C)(C)C(C)(C)C)C1=C(F)C(F)=C(F)C(F)=C1F1699.1Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 2,3,4,5,6-Pentafluorobenzamide GC-MS (Non-derivatized) - 70eV, Positivesplash10-01ox-2950000000-19fc726c6743d6eaedb32021-09-24Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 2,3,4,5,6-Pentafluorobenzamide GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 2,3,4,5,6-Pentafluorobenzamide GC-MS (TMS_1_1) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 2,3,4,5,6-Pentafluorobenzamide GC-MS (TMS_1_2) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 2,3,4,5,6-Pentafluorobenzamide GC-MS (TBDMS_1_1) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 2,3,4,5,6-Pentafluorobenzamide GC-MS (TBDMS_1_2) - 70eV, PositiveNot Available2021-11-03Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2,3,4,5,6-Pentafluorobenzamide 10V, Positive-QTOFsplash10-03di-0090000000-657871c0429790ecf46e2016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2,3,4,5,6-Pentafluorobenzamide 20V, Positive-QTOFsplash10-03dl-0690000000-b660376dc8515be453252016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2,3,4,5,6-Pentafluorobenzamide 40V, Positive-QTOFsplash10-0006-0920000000-dbe4fd61edbe3251ab352016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2,3,4,5,6-Pentafluorobenzamide 10V, Negative-QTOFsplash10-0a4i-0190000000-05bf47bf5782b61a659a2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2,3,4,5,6-Pentafluorobenzamide 20V, Negative-QTOFsplash10-0a4i-1290000000-d255ddb2f9f16ef13eef2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2,3,4,5,6-Pentafluorobenzamide 40V, Negative-QTOFsplash10-014l-4900000000-898b8af0ba3d9c4c0c5d2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2,3,4,5,6-Pentafluorobenzamide 10V, Positive-QTOFsplash10-03di-0090000000-020d7f265ebb5c46bc9b2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2,3,4,5,6-Pentafluorobenzamide 20V, Positive-QTOFsplash10-03di-0090000000-020d7f265ebb5c46bc9b2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2,3,4,5,6-Pentafluorobenzamide 40V, Positive-QTOFsplash10-03di-0190000000-45c6be5bd9de73824e0d2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2,3,4,5,6-Pentafluorobenzamide 10V, Negative-QTOFsplash10-0a4i-0090000000-52e9687aebbf9329cfcc2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2,3,4,5,6-Pentafluorobenzamide 20V, Negative-QTOFsplash10-0a4i-0090000000-52e9687aebbf9329cfcc2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 2,3,4,5,6-Pentafluorobenzamide 40V, Negative-QTOFsplash10-0a4i-0290000000-3b714b98ee065ca508c12021-10-12Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID62751
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound69547
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]