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Showing metabocard for 4-Nitro-3-(trifluoromethyl)phenol (HMDB0246527)

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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-10 23:32:41 UTC
Update Date2021-09-26 22:55:40 UTC
HMDB IDHMDB0246527
Secondary Accession NumbersNone
Metabolite Identification
Common Name4-Nitro-3-(trifluoromethyl)phenol
Description4-nitro-3-(trifluoromethyl)phenol belongs to the class of organic compounds known as nitrophenols. Nitrophenols are compounds containing a nitrophenol moiety, which consists of a benzene ring bearing both a hydroxyl group and a nitro group on two different ring carbon atoms. 4-nitro-3-(trifluoromethyl)phenol is an extremely weak basic (essentially neutral) compound (based on its pKa). This compound has been identified in human blood as reported by (PMID: 31557052 ). 4-nitro-3-(trifluoromethyl)phenol is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically 4-Nitro-3-(trifluoromethyl)phenol is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
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MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0246527 (4-Nitro-3-(trifluoromethyl)phenol)

  Mrv1572004221603102D          

 14 14  0  0  0  0            999 V2000
    1.4289   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    1.6500    0.0000 F   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3020    1.9520    0.0000 F   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1270    0.5230    0.0000 F   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000    2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  2  0  0  0  0
  4  1  1  0  0  0  0
  4  3  2  0  0  0  0
  5  3  1  0  0  0  0
  6  2  1  0  0  0  0
  6  5  2  0  0  0  0
  7  5  1  0  0  0  0
  8  7  1  0  0  0  0
  9  7  1  0  0  0  0
 10  7  1  0  0  0  0
 11  6  1  0  0  0  0
 12  4  1  0  0  0  0
 13 11  2  0  0  0  0
 14 11  2  0  0  0  0
M  END
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3D MOL for HMDB0246527 (4-Nitro-3-(trifluoromethyl)phenol)

HMDB0246527
     RDKit          3D
4-Nitro-3-(trifluoromethyl)phenol
 18 18  0  0  0  0  0  0  0  0999 V2000
    0.4568    3.2019   -0.8035 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9775    2.0509   -0.7475 N   0  0  0  0  0  4  0  0  0  0  0  0
    2.3209    1.9794   -0.9899 O   0  0  0  0  0  1  0  0  0  0  0  0
    0.1584    0.9349   -0.4451 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2118    0.9583   -0.7679 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0382   -0.1047   -0.4716 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5215   -1.2207    0.1547 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2725   -2.3343    0.4917 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1836   -1.2425    0.4690 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6741   -0.1742    0.1771 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1020   -0.2329    0.5100 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5288    0.7914    1.3296 F   0  0  0  0  0  0  0  0  0  0  0  0
    2.2684   -1.4045    1.2858 F   0  0  0  0  0  0  0  0  0  0  0  0
    2.9325   -0.4299   -0.5749 F   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5900    1.8434   -1.2574 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0995   -0.1033   -0.7139 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7357   -2.4055    1.3961 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2333   -2.1077    0.9578 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  2  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  7  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  1  0
 11 13  1  0
 11 14  1  0
 10  4  1  0
  5 15  1  0
  6 16  1  0
  8 17  1  0
  9 18  1  0
M  CHG  2   2   1   3  -1
M  END
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3D SDF for HMDB0246527 (4-Nitro-3-(trifluoromethyl)phenol)

  Mrv1572004221603102D          

 14 14  0  0  0  0            999 V2000
    1.4289   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    1.6500    0.0000 F   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3020    1.9520    0.0000 F   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1270    0.5230    0.0000 F   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000    2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  2  0  0  0  0
  4  1  1  0  0  0  0
  4  3  2  0  0  0  0
  5  3  1  0  0  0  0
  6  2  1  0  0  0  0
  6  5  2  0  0  0  0
  7  5  1  0  0  0  0
  8  7  1  0  0  0  0
  9  7  1  0  0  0  0
 10  7  1  0  0  0  0
 11  6  1  0  0  0  0
 12  4  1  0  0  0  0
 13 11  2  0  0  0  0
 14 11  2  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0246527

> <DATABASE_NAME>
hmdb

> <SMILES>
OC1=CC(=C(C=C1)N(=O)=O)C(F)(F)F

> <INCHI_IDENTIFIER>
InChI=1S/C7H4F3NO3/c8-7(9,10)5-3-4(12)1-2-6(5)11(13)14/h1-3,12H

> <INCHI_KEY>
ZEFMBAFMCSYJOO-UHFFFAOYSA-N

> <FORMULA>
C7H4F3NO3

> <MOLECULAR_WEIGHT>
207.108

> <EXACT_MASS>
207.014327482

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
18

> <JCHEM_AVERAGE_POLARIZABILITY>
14.476072736291584

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
4-nitro-3-(trifluoromethyl)phenol

> <ALOGPS_LOGP>
2.31

> <JCHEM_LOGP>
2.487513165333333

> <ALOGPS_LOGS>
-3.53

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA_STRONGEST_ACIDIC>
6.680394009386528

> <JCHEM_PKA_STRONGEST_BASIC>
-7.092417660722778

> <JCHEM_POLAR_SURFACE_AREA>
66.05000000000001

> <JCHEM_REFRACTIVITY>
41.3373

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
6.05e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
tfm (piscicide)

> <JCHEM_VEBER_RULE>
0

$$$$
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3D-SDF for HMDB0246527 (4-Nitro-3-(trifluoromethyl)phenol)

HMDB0246527
     RDKit          3D
4-Nitro-3-(trifluoromethyl)phenol
 18 18  0  0  0  0  0  0  0  0999 V2000
    0.4568    3.2019   -0.8035 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9775    2.0509   -0.7475 N   0  0  0  0  0  4  0  0  0  0  0  0
    2.3209    1.9794   -0.9899 O   0  0  0  0  0  1  0  0  0  0  0  0
    0.1584    0.9349   -0.4451 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2118    0.9583   -0.7679 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0382   -0.1047   -0.4716 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5215   -1.2207    0.1547 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2725   -2.3343    0.4917 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1836   -1.2425    0.4690 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6741   -0.1742    0.1771 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1020   -0.2329    0.5100 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5288    0.7914    1.3296 F   0  0  0  0  0  0  0  0  0  0  0  0
    2.2684   -1.4045    1.2858 F   0  0  0  0  0  0  0  0  0  0  0  0
    2.9325   -0.4299   -0.5749 F   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5900    1.8434   -1.2574 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0995   -0.1033   -0.7139 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7357   -2.4055    1.3961 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2333   -2.1077    0.9578 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  2  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  7  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  1  0
 11 13  1  0
 11 14  1  0
 10  4  1  0
  5 15  1  0
  6 16  1  0
  8 17  1  0
  9 18  1  0
M  CHG  2   2   1   3  -1
M  END
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PDB for HMDB0246527 (4-Nitro-3-(trifluoromethyl)phenol)

HEADER    PROTEIN                                 22-APR-16   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   22-APR-16         0                                  
HETATM    1  C   UNK     0       2.667  -0.000   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.000  -0.000   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.334   2.310   0.000  0.00  0.00           C+0
HETATM    8  F   UNK     0      -2.667   3.080   0.000  0.00  0.00           F+0
HETATM    9  F   UNK     0      -0.564   3.644   0.000  0.00  0.00           F+0
HETATM   10  F   UNK     0      -2.104   0.976   0.000  0.00  0.00           F+0
HETATM   11  N   UNK     0       1.334   3.850   0.000  0.00  0.00           N+0
HETATM   12  O   UNK     0       1.334  -2.310   0.000  0.00  0.00           O+0
HETATM   13  O   UNK     0      -0.000   4.620   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0       2.667   4.620   0.000  0.00  0.00           O+0
CONECT    1    2    4                                                       
CONECT    2    1    6                                                       
CONECT    3    4    5                                                       
CONECT    4    1    3   12                                                  
CONECT    5    3    6    7                                                  
CONECT    6    2    5   11                                                  
CONECT    7    5    8    9   10                                             
CONECT    8    7                                                            
CONECT    9    7                                                            
CONECT   10    7                                                            
CONECT   11    6   13   14                                                  
CONECT   12    4                                                            
CONECT   13   11                                                            
CONECT   14   11                                                            
MASTER        0    0    0    0    0    0    0    0   14    0   28    0
END
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3D PDB for HMDB0246527 (4-Nitro-3-(trifluoromethyl)phenol)

COMPND    HMDB0246527
HETATM    1  O1  UNL     1       0.457   3.202  -0.804  1.00  0.00           O  
HETATM    2  N1  UNL     1       0.977   2.051  -0.748  1.00  0.00           N1+
HETATM    3  O2  UNL     1       2.321   1.979  -0.990  1.00  0.00           O1-
HETATM    4  C1  UNL     1       0.158   0.935  -0.445  1.00  0.00           C  
HETATM    5  C2  UNL     1      -1.212   0.958  -0.768  1.00  0.00           C  
HETATM    6  C3  UNL     1      -2.038  -0.105  -0.472  1.00  0.00           C  
HETATM    7  C4  UNL     1      -1.521  -1.221   0.155  1.00  0.00           C  
HETATM    8  O3  UNL     1      -2.272  -2.334   0.492  1.00  0.00           O  
HETATM    9  C5  UNL     1      -0.184  -1.243   0.469  1.00  0.00           C  
HETATM   10  C6  UNL     1       0.674  -0.174   0.177  1.00  0.00           C  
HETATM   11  C7  UNL     1       2.102  -0.233   0.510  1.00  0.00           C  
HETATM   12  F1  UNL     1       2.529   0.791   1.330  1.00  0.00           F  
HETATM   13  F2  UNL     1       2.268  -1.404   1.286  1.00  0.00           F  
HETATM   14  F3  UNL     1       2.933  -0.430  -0.575  1.00  0.00           F  
HETATM   15  H1  UNL     1      -1.590   1.843  -1.257  1.00  0.00           H  
HETATM   16  H2  UNL     1      -3.100  -0.103  -0.714  1.00  0.00           H  
HETATM   17  H3  UNL     1      -2.736  -2.406   1.396  1.00  0.00           H  
HETATM   18  H4  UNL     1       0.233  -2.108   0.958  1.00  0.00           H  
CONECT    1    2    2
CONECT    2    3    4
CONECT    4    5    5   10
CONECT    5    6   15
CONECT    6    7    7   16
CONECT    7    8    9
CONECT    8   17
CONECT    9   10   10   18
CONECT   10   11
CONECT   11   12   13   14
END
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SMILES for HMDB0246527 (4-Nitro-3-(trifluoromethyl)phenol)

OC1=CC(=C(C=C1)N(=O)=O)C(F)(F)F
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INCHI for HMDB0246527 (4-Nitro-3-(trifluoromethyl)phenol)

InChI=1S/C7H4F3NO3/c8-7(9,10)5-3-4(12)1-2-6(5)11(13)14/h1-3,12H
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View in JSmolView Stereo Labels
Synonyms
ValueSource
TFM (3-Trifluoromethyl-4-nitrophenol)MeSH
3-Trifluoromethyl-4-nitrophenolMeSH
alpha,alpha,alpha-trifluoro-4-nitro-m-CresolMeSH
Chemical FormulaC7H4F3NO3
Average Molecular Weight207.108
Monoisotopic Molecular Weight207.014327482
IUPAC Name4-nitro-3-(trifluoromethyl)phenol
Traditional Nametfm (piscicide)
CAS Registry NumberNot Available
SMILES
OC1=CC(=C(C=C1)N(=O)=O)C(F)(F)F
InChI Identifier
InChI=1S/C7H4F3NO3/c8-7(9,10)5-3-4(12)1-2-6(5)11(13)14/h1-3,12H
InChI KeyZEFMBAFMCSYJOO-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as nitrophenols. Nitrophenols are compounds containing a nitrophenol moiety, which consists of a benzene ring bearing both a hydroxyl group and a nitro group on two different ring carbon atoms.
KingdomOrganic compounds
Super ClassBenzenoids
ClassPhenols
Sub ClassNitrophenols
Direct ParentNitrophenols
Alternative Parents
Substituents
  • Nitrophenol
  • Trifluoromethylbenzene
  • Nitrobenzene
  • Nitroaromatic compound
  • 1-hydroxy-2-unsubstituted benzenoid
  • Monocyclic benzene moiety
  • C-nitro compound
  • Organic nitro compound
  • Organic oxoazanium
  • Organic 1,3-dipolar compound
  • Propargyl-type 1,3-dipolar organic compound
  • Allyl-type 1,3-dipolar organic compound
  • Organic nitrogen compound
  • Organooxygen compound
  • Organonitrogen compound
  • Organofluoride
  • Hydrocarbon derivative
  • Organohalogen compound
  • Alkyl fluoride
  • Organic oxide
  • Alkyl halide
  • Organopnictogen compound
  • Organic oxygen compound
  • Aromatic homomonocyclic compound
Molecular FrameworkAromatic homomonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Biological locationSource
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
Predicted Chromatographic Properties
Spectra
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]