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Showing metabocard for 7-Hydroxy-4-(trifluoromethyl)coumarin (HMDB0247257)

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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 00:15:55 UTC
Update Date2021-09-26 22:56:50 UTC
HMDB IDHMDB0247257
Secondary Accession NumbersNone
Metabolite Identification
Common Name7-Hydroxy-4-(trifluoromethyl)coumarin
Description7-Hydroxy-4-(trifluoromethyl)coumarin, also known as 7,4-HFC, belongs to the class of organic compounds known as 7-hydroxycoumarins. These are coumarins that contain one or more hydroxyl groups attached to the C7 position the coumarin skeleton. Based on a literature review a significant number of articles have been published on 7-Hydroxy-4-(trifluoromethyl)coumarin. This compound has been identified in human blood as reported by (PMID: 31557052 ). 7-hydroxy-4-(trifluoromethyl)coumarin is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically 7-Hydroxy-4-(trifluoromethyl)coumarin is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
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MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0247257 (7-Hydroxy-4-(trifluoromethyl)coumarin)

  Mrv1652309112102162D          

 16 17  0  0  0  0            999 V2000
   -0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -3.3000    0.0000 F   0  0  0  0  0  0  0  0  0  0  0  0
    0.6039   -2.4750    0.0000 F   0  0  0  0  0  0  0  0  0  0  0  0
    2.2539   -2.4750    0.0000 F   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  1  6  1  0  0  0  0
  6  7  1  0  0  0  0
  4  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
 11 12  2  0  0  0  0
  3 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
 13 16  1  0  0  0  0
M  END
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3D MOL for HMDB0247257 (7-Hydroxy-4-(trifluoromethyl)coumarin)

HMDB0247257
     RDKit          3D
7-Hydroxy-4-(trifluoromethyl)coumarin
 21 22  0  0  0  0  0  0  0  0999 V2000
   -1.3441    3.7751   -0.3422 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9582    2.5798   -0.2363 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8947    1.5684   -0.2201 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5260    0.2244   -0.1048 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5293   -0.8608   -0.0873 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3320   -1.7360   -1.1311 F   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5540   -1.5297    1.1362 F   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7810   -0.2973   -0.2501 F   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1828   -0.0612   -0.0069 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2830   -1.3734    0.1118 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6322   -1.6242    0.2077 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5365   -0.6028    0.1889 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9128   -0.7848    0.2815 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0579    0.6828    0.0713 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7157    0.9836   -0.0277 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3014    2.2442   -0.1397 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9509    1.7611   -0.2949 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4580   -2.1613    0.1238 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9754   -2.6335    0.2981 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3455   -1.6921    0.3700 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7506    1.5378    0.0519 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  5  7  1  0
  5  8  1  0
  4  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 12 14  1  0
 14 15  2  0
 15 16  1  0
 16  2  1  0
 15  9  1  0
  3 17  1  0
 10 18  1  0
 11 19  1  0
 13 20  1  0
 14 21  1  0
M  END
Download

3D SDF for HMDB0247257 (7-Hydroxy-4-(trifluoromethyl)coumarin)

  Mrv1652309112102162D          

 16 17  0  0  0  0            999 V2000
   -0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -3.3000    0.0000 F   0  0  0  0  0  0  0  0  0  0  0  0
    0.6039   -2.4750    0.0000 F   0  0  0  0  0  0  0  0  0  0  0  0
    2.2539   -2.4750    0.0000 F   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  1  6  1  0  0  0  0
  6  7  1  0  0  0  0
  4  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
 11 12  2  0  0  0  0
  3 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
 13 16  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0247257

> <DATABASE_NAME>
hmdb

> <SMILES>
OC1=CC2=C(C=C1)C(=CC(=O)O2)C(F)(F)F

> <INCHI_IDENTIFIER>
InChI=1S/C10H5F3O3/c11-10(12,13)7-4-9(15)16-8-3-5(14)1-2-6(7)8/h1-4,14H

> <INCHI_KEY>
CCKWMCUOHJAVOL-UHFFFAOYSA-N

> <FORMULA>
C10H5F3O3

> <MOLECULAR_WEIGHT>
230.142

> <EXACT_MASS>
230.01907851

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
21

> <JCHEM_AVERAGE_POLARIZABILITY>
17.74676083289342

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
7-hydroxy-4-(trifluoromethyl)-2H-chromen-2-one

> <ALOGPS_LOGP>
2.95

> <JCHEM_LOGP>
2.143615991

> <ALOGPS_LOGS>
-2.58

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.459957937332923

> <JCHEM_PKA_STRONGEST_BASIC>
-6.992230480553752

> <JCHEM_POLAR_SURFACE_AREA>
46.53

> <JCHEM_REFRACTIVITY>
48.74399999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
6.09e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
7-hydroxy-4-(trifluoromethyl)chromen-2-one

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for HMDB0247257 (7-Hydroxy-4-(trifluoromethyl)coumarin)

HMDB0247257
     RDKit          3D
7-Hydroxy-4-(trifluoromethyl)coumarin
 21 22  0  0  0  0  0  0  0  0999 V2000
   -1.3441    3.7751   -0.3422 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9582    2.5798   -0.2363 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8947    1.5684   -0.2201 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5260    0.2244   -0.1048 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5293   -0.8608   -0.0873 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3320   -1.7360   -1.1311 F   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5540   -1.5297    1.1362 F   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7810   -0.2973   -0.2501 F   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1828   -0.0612   -0.0069 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2830   -1.3734    0.1118 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6322   -1.6242    0.2077 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5365   -0.6028    0.1889 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9128   -0.7848    0.2815 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0579    0.6828    0.0713 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7157    0.9836   -0.0277 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3014    2.2442   -0.1397 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9509    1.7611   -0.2949 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4580   -2.1613    0.1238 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9754   -2.6335    0.2981 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3455   -1.6921    0.3700 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7506    1.5378    0.0519 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  5  7  1  0
  5  8  1  0
  4  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 12 14  1  0
 14 15  2  0
 15 16  1  0
 16  2  1  0
 15  9  1  0
  3 17  1  0
 10 18  1  0
 11 19  1  0
 13 20  1  0
 14 21  1  0
M  END
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PDB for HMDB0247257 (7-Hydroxy-4-(trifluoromethyl)coumarin)

HEADER    PROTEIN                                 11-SEP-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-SEP-21         0                                  
HETATM    1  C   UNK     0      -1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.000  -3.080   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.000  -0.000   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0      -2.667   0.000   0.000  0.00  0.00           O+0
HETATM    8  O   UNK     0       2.667  -0.000   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       5.335  -0.000   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.667  -4.620   0.000  0.00  0.00           C+0
HETATM   14  F   UNK     0       2.667  -6.160   0.000  0.00  0.00           F+0
HETATM   15  F   UNK     0       1.127  -4.620   0.000  0.00  0.00           F+0
HETATM   16  F   UNK     0       4.207  -4.620   0.000  0.00  0.00           F+0
CONECT    1    2    6                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4   12                                                  
CONECT    4    3    5    8                                                  
CONECT    5    4    6                                                       
CONECT    6    5    1    7                                                  
CONECT    7    6                                                            
CONECT    8    4    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12                                                       
CONECT   12   11    3   13                                                  
CONECT   13   12   14   15   16                                             
CONECT   14   13                                                            
CONECT   15   13                                                            
CONECT   16   13                                                            
MASTER        0    0    0    0    0    0    0    0   16    0   34    0
END
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3D PDB for HMDB0247257 (7-Hydroxy-4-(trifluoromethyl)coumarin)

COMPND    HMDB0247257
HETATM    1  O1  UNL     1      -1.344   3.775  -0.342  1.00  0.00           O  
HETATM    2  C1  UNL     1      -0.958   2.580  -0.236  1.00  0.00           C  
HETATM    3  C2  UNL     1      -1.895   1.568  -0.220  1.00  0.00           C  
HETATM    4  C3  UNL     1      -1.526   0.224  -0.105  1.00  0.00           C  
HETATM    5  C4  UNL     1      -2.529  -0.861  -0.087  1.00  0.00           C  
HETATM    6  F1  UNL     1      -2.332  -1.736  -1.131  1.00  0.00           F  
HETATM    7  F2  UNL     1      -2.554  -1.530   1.136  1.00  0.00           F  
HETATM    8  F3  UNL     1      -3.781  -0.297  -0.250  1.00  0.00           F  
HETATM    9  C5  UNL     1      -0.183  -0.061  -0.007  1.00  0.00           C  
HETATM   10  C6  UNL     1       0.283  -1.373   0.112  1.00  0.00           C  
HETATM   11  C7  UNL     1       1.632  -1.624   0.208  1.00  0.00           C  
HETATM   12  C8  UNL     1       2.536  -0.603   0.189  1.00  0.00           C  
HETATM   13  O2  UNL     1       3.913  -0.785   0.282  1.00  0.00           O  
HETATM   14  C9  UNL     1       2.058   0.683   0.071  1.00  0.00           C  
HETATM   15  C10 UNL     1       0.716   0.984  -0.028  1.00  0.00           C  
HETATM   16  O3  UNL     1       0.301   2.244  -0.140  1.00  0.00           O  
HETATM   17  H1  UNL     1      -2.951   1.761  -0.295  1.00  0.00           H  
HETATM   18  H2  UNL     1      -0.458  -2.161   0.124  1.00  0.00           H  
HETATM   19  H3  UNL     1       1.975  -2.633   0.298  1.00  0.00           H  
HETATM   20  H4  UNL     1       4.345  -1.692   0.370  1.00  0.00           H  
HETATM   21  H5  UNL     1       2.751   1.538   0.052  1.00  0.00           H  
CONECT    1    2    2
CONECT    2    3   16
CONECT    3    4    4   17
CONECT    4    5    9
CONECT    5    6    7    8
CONECT    9   10   10   15
CONECT   10   11   18
CONECT   11   12   12   19
CONECT   12   13   14
CONECT   13   20
CONECT   14   15   15   21
CONECT   15   16
END
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SMILES for HMDB0247257 (7-Hydroxy-4-(trifluoromethyl)coumarin)

OC1=CC2=C(C=C1)C(=CC(=O)O2)C(F)(F)F
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INCHI for HMDB0247257 (7-Hydroxy-4-(trifluoromethyl)coumarin)

InChI=1S/C10H5F3O3/c11-10(12,13)7-4-9(15)16-8-3-5(14)1-2-6(7)8/h1-4,14H
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View in JSmolView Stereo Labels
Synonyms
ValueSource
7,4-HFCHMDB
7-Hydroxy-4-trifluoromethylcoumarinHMDB
Chemical FormulaC10H5F3O3
Average Molecular Weight230.142
Monoisotopic Molecular Weight230.01907851
IUPAC Name7-hydroxy-4-(trifluoromethyl)-2H-chromen-2-one
Traditional Name7-hydroxy-4-(trifluoromethyl)chromen-2-one
CAS Registry NumberNot Available
SMILES
OC1=CC2=C(C=C1)C(=CC(=O)O2)C(F)(F)F
InChI Identifier
InChI=1S/C10H5F3O3/c11-10(12,13)7-4-9(15)16-8-3-5(14)1-2-6(7)8/h1-4,14H
InChI KeyCCKWMCUOHJAVOL-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as 7-hydroxycoumarins. These are coumarins that contain one or more hydroxyl groups attached to the C7 position the coumarin skeleton.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassCoumarins and derivatives
Sub ClassHydroxycoumarins
Direct Parent7-hydroxycoumarins
Alternative Parents
Substituents
  • 7-hydroxycoumarin
  • Benzopyran
  • 1-benzopyran
  • 1-hydroxy-2-unsubstituted benzenoid
  • Pyranone
  • Pyran
  • Benzenoid
  • Heteroaromatic compound
  • Lactone
  • Oxacycle
  • Organoheterocyclic compound
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organofluoride
  • Organohalogen compound
  • Organic oxide
  • Alkyl halide
  • Alkyl fluoride
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Biological locationSource
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
Predicted Chromatographic Properties
Spectra
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID4525103
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound5375667
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]